pycom15g27120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017924
Physical Location & Seq
Reverse (-)
22406386 .. 22408021
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g27120.1

Sequence Viewer

Length: 369 bp
ATGATAAAGCTAAATAATCAATTTTGTACCAAGTTTGTTGGATCGATAATCTCCCTGGTATGTGAGGAGGGAGAGAGAGAGGGAGAGAGAGATCAAAGGCAAAGGATGGCGCGGGCAGGTGGGATAACAAACGCAGTGAACGTAGGGATAGCGGTCCAAGCCGATTGGGAAAATCGCGAGTTCATCTCCCACATTTCTCTCAACGTCCGCCGCCTCTTCGATTTCCTTGTCCAATTCGAGGCCACGACAAAGAGCAAATTGGCGTCATTAAACGAGAAGCTTGATGTATTGGAACGTAAACTAGAACTTCTTGAAGTTCAAGTGGGTACTGCATCAGCCAACCCTTCACTTTTTGCTCGTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04810 map04810
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.71

Weight (kDa)

5.88

Isoelectric Point (pI)

15.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22640
fragaria_vesca FvH4_1g19040
malus_domestica MD01G1044400.v1.1
prunus_persica Prupe.6G209300_v2.0.a1 Prupe.6G209300_v2.0.a1 Prupe.6G209300_v2.0.a1
pyrus_communis pycom15g27120
rosa_chinensis RchiOBHm_Chr2g0110041
rosa_roxburghii Rroxscaffold_2G00133760
rosa_samantha Rh2BG227100
rosa_wichuraiana Rw2G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 107
AccII CGCG 2 cut(s) 112, 177
AciI CCGC 4 cut(s) 112, 152, 208, 211
AclWI GGATC 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 2 cut(s) 28, 328
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 2 cut(s) 314, 320
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 2 cut(s) 10, 280
AluI AGCT 2 cut(s) 10, 280
AlwI GGATC 1 cut(s) 49
AoxI GGCC 1 cut(s) 240
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 154
AvaII GGWCC 1 cut(s) 154
BauI CACGAG 1 cut(s) 357
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 56
BfaI CTAG 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 341, 352
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bsa29I ATCGAT 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 56
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 80
Bsh1236I CGCG 2 cut(s) 112, 177
BshFI GGCC 1 cut(s) 242
BshVI ATCGAT 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 238
BsnI GGCC 1 cut(s) 242
Bsp143I GATC 2 cut(s) 41, 91
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 4 cut(s) 112, 152, 208, 211
BspANI GGCC 1 cut(s) 242
BspDI ATCGAT 1 cut(s) 44
BspFNI CGCG 2 cut(s) 112, 177
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 41, 91
BssNI GRCGYC 1 cut(s) 263
BssSI CACGAG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 112, 177
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 2 cut(s) 44, 94
BstMBI GATC 2 cut(s) 41, 91
BstMWI GCNNNNNNNGC 2 cut(s) 158, 362
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstUI CGCG 2 cut(s) 112, 177
Bsu15I ATCGAT 1 cut(s) 44
BsuRI GGCC 1 cut(s) 242
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
BtuMI TCGCGA 1 cut(s) 177
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 44
CseI GACGC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 27, 327
CviJI RGCY 5 cut(s) 10, 161, 242, 280, 338
CviKI_1 RGCY 5 cut(s) 10, 161, 242, 280, 338
CviQI GTAC 2 cut(s) 27, 327
DdeI CTNAG 1 cut(s) 366
DpnI GATC 2 cut(s) 43, 93
DpnII GATC 2 cut(s) 41, 91
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EciI GGCGGA 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 54
FaiI YATR 1 cut(s) 61
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 211
HaeIII GGCC 1 cut(s) 242
HgaI GACGC 1 cut(s) 252
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 263
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 139, 299
Hpy188III TCNNGA 3 cut(s) 176, 311, 359
Hpy8I GTNNAC 2 cut(s) 139, 299
HpyAV CCTTC 1 cut(s) 354
HpyCH4IV ACGT 3 cut(s) 141, 204, 295
HpyCH4V TGCA 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 362
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 3 cut(s) 141, 204, 295
Hsp92I GRCGYC 1 cut(s) 263
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 41, 91
LpnPI CCDG 3 cut(s) 41, 68, 102
LweI GCATC 2 cut(s) 341, 352
MaeI CTAG 1 cut(s) 302
MaeII ACGT 3 cut(s) 141, 204, 295
MalI GATC 2 cut(s) 43, 93
MboI GATC 2 cut(s) 41, 91
MboII GAAGA 1 cut(s) 208
MluCI AATT 3 cut(s) 20, 233, 257
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 5 cut(s) 58, 61, 73, 224, 232
MseI TTAA 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MvnI CGCG 2 cut(s) 112, 177
MwoI GCNNNNNNNGC 2 cut(s) 158, 362
NdeII GATC 2 cut(s) 41, 91
NruI TCGCGA 1 cut(s) 177
PaqCI CACCTGC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PkrI GCNGC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspPI GGNCC 1 cut(s) 154
RruI TCGCGA 1 cut(s) 177
RsaI GTAC 2 cut(s) 28, 328
RsaNI GTAC 2 cut(s) 27, 327
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 2 cut(s) 41, 91
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 56
SetI ASST 6 cut(s) 12, 121, 144, 207, 282, 298
SfaNI GCATC 2 cut(s) 341, 352
SinI GGWCC 1 cut(s) 154
Sse9I AATT 3 cut(s) 20, 233, 257
SsiI CCGC 4 cut(s) 112, 152, 208, 211
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 54
TaiI ACGT 3 cut(s) 144, 207, 298
TaqI TCGA 3 cut(s) 44, 219, 237
TasI AATT 3 cut(s) 20, 233, 257
TauI GCSGC 1 cut(s) 213
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 172
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 154
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.