Prupe.6G209300_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
21776304 .. 21778668
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G209300.2

Sequence Viewer

Length: 264 bp
ATGGCTCGGGCAGGTGGAATAACAAACGCAGTGAACGTTGGGATAGCGGTCCAAGCTGATTGGGAAAACCGCGAATTCATCTCCCACATTTCTCTCAATGTTCGCCGCCTCTTCGATTTCCTTGTCCAATTCGAGGCTACAACAAAGAGCAAATTGGCATCACTGAATGAGAAGCTTGATGTATTGGAACGAAAGCTAGAACTTCTTGAAGTTCAAGTGGGTACTGCATCAGCCAACCCTTCTCTTTTTGCTCGTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.62

Weight (kDa)

5.75

Isoelectric Point (pI)

14.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22640
fragaria_vesca FvH4_1g19040
malus_domestica MD01G1044400.v1.1
prunus_persica Prupe.6G209300_v2.0.a1 Prupe.6G209300_v2.0.a1 Prupe.6G209300_v2.0.a1
pyrus_communis pycom15g27120
rosa_chinensis RchiOBHm_Chr2g0110041
rosa_roxburghii Rroxscaffold_2G00133760
rosa_samantha Rh2BG227100
rosa_wichuraiana Rw2G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2
Acc36I ACCTGC 1 cut(s) 2
AccII CGCG 1 cut(s) 72
AciI CCGC 3 cut(s) 47, 70, 106
AclI AACGTT 1 cut(s) 36
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 2 cut(s) 209, 215
AluBI AGCT 3 cut(s) 56, 175, 196
AluI AGCT 3 cut(s) 56, 175, 196
Ama87I CYCGRG 1 cut(s) 6
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 49
BauI CACGAG 1 cut(s) 252
BfaI CTAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 2
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 49
BmsI GCATC 3 cut(s) 167, 236, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 6
BspACI CCGC 3 cut(s) 47, 70, 106
BspFNI CGCG 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 2
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 261
BstFNI CGCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 53, 257
BstUI CGCG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 36, 161
BveI ACCTGC 1 cut(s) 2
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 222
CviJI RGCY 6 cut(s) 5, 56, 137, 175, 196, 233
CviKI_1 RGCY 6 cut(s) 5, 56, 137, 175, 196, 233
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 74
Fnu4HI GCNGC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 206, 254
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 257
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 36
LweI GCATC 3 cut(s) 167, 236, 247
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 36
MboII GAAGA 1 cut(s) 103
MluCI AATT 3 cut(s) 74, 128, 152
MnlI CCTC 2 cut(s) 119, 127
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 53, 257
PaqCI CACCTGC 1 cut(s) 2
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PkrI GCNGC 1 cut(s) 107
Psp1406I AACGTT 1 cut(s) 36
PspPI GGNCC 1 cut(s) 49
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SatI GCNGC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 49
SetI ASST 5 cut(s) 16, 39, 58, 177, 198
SfaNI GCATC 3 cut(s) 167, 236, 247
SinI GGWCC 1 cut(s) 49
Sse9I AATT 3 cut(s) 74, 128, 152
SsiI CCGC 3 cut(s) 47, 70, 106
SspMI CTAG 1 cut(s) 197
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 114, 132
TasI AATT 3 cut(s) 74, 128, 152
TauI GCSGC 1 cut(s) 108
TscAI CASTG 2 cut(s) 36, 168
TspDTI ATGAA 1 cut(s) 67
TspRI CASTG 2 cut(s) 36, 168
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 74
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.