Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010809

Physical Location & Seq

Genomic Coordinates Reverse (-)

10122497 .. 10124669

Gene Structure 2173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTGAATGGAGAATCATCAACTAGTACGTCTTACTCTGATAGTAACAATGACACAAATGATCAAGGAGGAGACTTTGAATGTAACATTTGTTTCGAACTAGCTCAAGATCCGATTGTCACTCTCTGTGGCCATCTCTTTTGCTGGCCTTGCTTATACCGTTGGCTTCACCACCATTCACATTCTCAAGAATGTCCGGTTTGTAAAGCCGTGGTTCAAGACGATAAGCTTGTTCCTCTTTACGGTAGAGGCAAGAACCAGACTGACCCGAGATCAAAACGTTATCCGGGTTTACGGATTCCTAACCGACCAACAGGTCAAAGACCTGAGACTGCTGCTCCTCCTCCTCAGCCTGAAGCTGCGAGTAATTTTTTCAACTACGGTATTGGTTTGATGGGTGGAATTATGCCGATGATGGCGACTACGAGGTTTGGGAATTTCAGTATGGGGTTTGGTGGTTTGTTACCTTCTTTGTTTAACTTTCAGTTTCATGGATTTCATGATGCTACGCTTTATGGTTCAACACCGGGTTATCCTTACGGTGGTTATCATAACGGTTTCCGTGGAGTTCCTCCTCGTGGACAAGAGCGTCCTATGGCTCGTGGAGGAAACCAAAGTGATGCATTTCTGAAGAATATCCTCTTTTTTGTTGGAATCTGTGTGGTGATATTTCTCATCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

227

Amino Acids

25.18

Weight (kDa)

7.06

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	26 - 73	7.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	27 - 68	9.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	27 - 69	2e-08	Ring finger domain
zf-RING_5	PF14634	27 - 69	2.9e-07	zinc-RING finger domain
zf-RING_UBOX	PF13445	28 - 66	1e-08	RING-type zinc-finger
zf-C3HC4	PF00097	28 - 68	2.7e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23780 AT2G23780 AT2G23780
fragaria_vesca	FvH4_1g14110
malus_domestica	MD02G1155200.v1.1
prunus_persica	Prupe.7G148100_v2.0.a1 Prupe.7G148100_v2.0.a1
pyrus_communis	pycom02g12290 pycom15g23390
rosa_chinensis	RchiOBHm_Chr2g0102791
rosa_laevigata	RLG00000017179
rosa_roxburghii	Rroxscaffold_2G00140320
rosa_rugosa	Rorug02G0109400 Rorug02G0109500 Rorug02G0109500
rosa_samantha	Rh2AG157900 Rh2BG164400 Rh2CG164100 Rh2DG163200
rosa_wichuraiana	Rw2G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	315, 588
AclI	AACGTT	1 cut(s)	280
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	2 cut(s)	375, 650
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	3 cut(s)	242, 542, 578
AgsI	TTSAA	4 cut(s)	80, 218, 376, 522
AhlI	ACTAGT	1 cut(s)	23
AluBI	AGCT	3 cut(s)	104, 229, 359
AluI	AGCT	3 cut(s)	104, 229, 359
Alw26I	GTCTC	2 cut(s)	66, 323
AlwI	GGATC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	2 cut(s)	130, 146
ApeKI	GCWGC	2 cut(s)	335, 359
ApoI	RAATTY	1 cut(s)	436
AsuC2I	CCSGG	2 cut(s)	288, 528
AsuHPI	GGTGA	3 cut(s)	16, 161, 676
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	132
BauI	CACGAG	2 cut(s)	576, 600
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	322, 346
BccI	CCATC	3 cut(s)	141, 388, 409
BceAI	ACGGC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	2 cut(s)	288, 528
BcoDI	GTCTC	2 cut(s)	66, 323
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	24, 101
BisI	GCNGC	2 cut(s)	336, 360
BlsI	GCNGC	2 cut(s)	337, 361
Bme1390I	CCNGG	2 cut(s)	288, 528
BmeT110I	CYCGRG	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	288, 528
BmsI	GCATC	2 cut(s)	493, 610
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	90, 171
BpuMI	CCSGG	2 cut(s)	288, 528
BsaJI	CCNNGG	2 cut(s)	210, 562
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 542, 578
BseDI	CCNNGG	2 cut(s)	210, 562
BseLI	CCNNNNNNNGG	3 cut(s)	242, 542, 578
BseMII	CTCAG	2 cut(s)	318, 362
BseRI	GAGGAG	5 cut(s)	84, 330, 333, 336, 564
BseXI	GCAGC	2 cut(s)	322, 346
BshFI	GGCC	2 cut(s)	132, 148
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	197, 287, 527
BslI	CCNNNNNNNGG	3 cut(s)	242, 542, 578
BsmAI	GTCTC	2 cut(s)	66, 323
BsnI	GGCC	2 cut(s)	132, 148
BsoBI	CYCGRG	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	61, 109, 272
BspANI	GGCC	2 cut(s)	132, 148
BspCNI	CTCAG	2 cut(s)	319, 361
BspHI	TCATGA	1 cut(s)	499
BspPI	GGATC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	210, 562
BssMI	GATC	3 cut(s)	61, 109, 272
BssSI	CACGAG	2 cut(s)	576, 600
Bst2BI	CACGAG	2 cut(s)	576, 600
Bst4CI	ACNGT	5 cut(s)	161, 245, 383, 542, 557
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	327, 348
BstDSI	CCRYGG	2 cut(s)	210, 562
BstKTI	GATC	3 cut(s)	64, 112, 275
BstMAI	GTCTC	2 cut(s)	66, 323
BstMBI	GATC	3 cut(s)	61, 109, 272
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	286, 526
BstV1I	GCAGC	2 cut(s)	322, 346
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	132, 148
BtgI	CCRYGG	2 cut(s)	210, 562
Cac8I	GCNNGC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	499
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	2 cut(s)	491, 500
CviJI	RGCY	9 cut(s)	104, 132, 148, 166, 209, 229, 352, 359, 599
CviKI_1	RGCY	9 cut(s)	104, 132, 148, 166, 209, 229, 352, 359, 599
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	2 cut(s)	327, 348
DpnI	GATC	3 cut(s)	63, 111, 274
DpnII	GATC	3 cut(s)	61, 109, 272
DrdI	GACNNNNNNGTC	2 cut(s)	315, 588
DseDI	GACNNNNNNGTC	2 cut(s)	315, 588
EaeI	YGGCCR	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	375, 650
Eco88I	CYCGRG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	625
FaeI	CATG	2 cut(s)	494, 503
FaiI	YATR	8 cut(s)	157, 407, 446, 492, 501, 516, 552, 596
FatI	CATG	2 cut(s)	490, 499
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	336, 360
Fsp4HI	GCNGC	2 cut(s)	336, 360
FspBI	CTAG	2 cut(s)	24, 101
GluI	GCNGC	2 cut(s)	336, 360
HaeIII	GGCC	2 cut(s)	132, 148
HapII	CCGG	3 cut(s)	197, 287, 527
HgaI	GACGC	1 cut(s)	578
Hin1II	CATG	2 cut(s)	494, 503
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	14, 298, 654
HpaII	CCGG	3 cut(s)	197, 287, 527
HphI	GGTGA	3 cut(s)	16, 161, 676
Hpy166II	GTNNAC	2 cut(s)	293, 581
Hpy188I	TCNGA	3 cut(s)	40, 114, 630
Hpy188III	TCNNGA	4 cut(s)	107, 188, 218, 500
Hpy8I	GTNNAC	2 cut(s)	293, 581
HpyAV	CCTTC	1 cut(s)	477
HpyCH4III	ACNGT	5 cut(s)	161, 245, 383, 542, 557
HpyCH4IV	ACGT	2 cut(s)	29, 280
HpyCH4V	TGCA	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	327, 348
HpySE526I	ACGT	2 cut(s)	29, 280
Hsp92II	CATG	2 cut(s)	494, 503
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 109, 272
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	9 cut(s)	130, 210, 272, 300, 300, 339, 366, 540, 664
Lsp1109I	GCAGC	2 cut(s)	322, 346
LweI	GCATC	2 cut(s)	493, 610
MaeI	CTAG	2 cut(s)	24, 101
MaeII	ACGT	2 cut(s)	29, 280
MaeIII	GTNAC	4 cut(s)	44, 83, 118, 462
MalI	GATC	3 cut(s)	63, 111, 274
MboI	GATC	3 cut(s)	61, 109, 272
MboII	GAAGA	1 cut(s)	643
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	3 cut(s)	367, 402, 436
MluNI	TGGCCA	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	631
Mox20I	TGGCCA	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	625
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	3 cut(s)	197, 287, 527
MspR9I	CCNGG	2 cut(s)	288, 528
MwoI	GCNNNNNNNGC	1 cut(s)	150
NciI	CCSGG	2 cut(s)	288, 528
NdeII	GATC	3 cut(s)	61, 109, 272
NlaIII	CATG	2 cut(s)	494, 503
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	96
PagI	TCATGA	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	14, 298, 654
PkrI	GCNGC	2 cut(s)	337, 361
Psp1406I	AACGTT	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	2 cut(s)	336, 360
Sau3AI	GATC	3 cut(s)	61, 109, 272
ScrFI	CCNGG	2 cut(s)	288, 528
SetI	ASST	9 cut(s)	32, 106, 231, 283, 319, 328, 361, 431, 469
SfaNI	GCATC	2 cut(s)	493, 610
SfuI	TTCGAA	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	105, 186
SmoI	CTYRAG	2 cut(s)	105, 186
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	3 cut(s)	367, 402, 436
SspMI	CTAG	2 cut(s)	24, 101
StyD4I	CCNGG	2 cut(s)	286, 526
TaaI	ACNGT	5 cut(s)	161, 245, 383, 542, 557
TaiI	ACGT	2 cut(s)	32, 283
TaqI	TCGA	1 cut(s)	96
TasI	AATT	3 cut(s)	367, 402, 436
TfiI	GAWTC	3 cut(s)	14, 298, 654
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	335, 359
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	479, 488
TspGWI	ACGGA	2 cut(s)	310, 551
XapI	RAATTY	1 cut(s)	436
XspI	CTAG	2 cut(s)	24, 101
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.