Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010809

Physical Location & Seq

Genomic Coordinates Forward (+)

17460891 .. 17461574

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCAAGTGGTTTTGGGGAGTCAACAAGCGTGCCGCCCCAAAGCACGTCTTGCTCGGGTAACAATGCCAACGATGCAGGAGACTTTGAGTGCAATATTTGCTTCGAATTAGCCCAAGACCCGATCATAACCCTTTGCGGCCACCTCTTTTGCTGGCCTTGCCTCTACAGATGGCTCCACCATCACTCGAATTCCCAACAGTGCCCGGTTTGCAAAGCCCTCATACAGGACGAGAAGTTGGTTCCTCTTTATGGTAGGGGCAAGACGCAAACTGACCCAAGATCAAAGTCATATCCAGGGATCAACATTCCCAATCGCCCCTCTGCGCAGAGGCCTCAAACTGCCCCTCCTCCTCATACCAATCAGTTTGCCAATTATGGATTTGGATTCATGGGCGGATTTGTACCAATGGCAACTGCAAGGATTGGTAACTTCACGTTGGCAACTGCATTTGGTGGTCTGATACCGTCGTTGCTTAACATTCAGTATCACGGGTTCCCTGATGCTACTGTATATGGAACAACTTCAGGTTTCCCTTATGCGTCATTCAGTTCATTTCACGGGGGCCATGCTCACTTATTCCCTCAGCCGGAAAATCATCAAGGGCAGCCGGGTGATGTTTTGAAGTATCTTTTTTTGTTGGTCGGTGTGTTTGTGATCGTTGCGGTTATTTTCGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

228

Amino Acids

24.6

Weight (kDa)

6.77

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	29 - 76	2e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	30 - 71	7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	30 - 72	8.2e-09	Ring finger domain
zf-RING_5	PF14634	30 - 72	5.1e-08	zinc-RING finger domain
zf-C3HC4	PF00097	31 - 71	2.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	31 - 69	4.7e-08	RING-type zinc-finger
zf-C3HC4_4	PF15227	31 - 71	1e-05	zinc finger of C3HC4-type, RING

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23780 AT2G23780 AT2G23780
fragaria_vesca	FvH4_1g14110
malus_domestica	MD02G1155200.v1.1
prunus_persica	Prupe.7G148100_v2.0.a1 Prupe.7G148100_v2.0.a1
pyrus_communis	pycom02g12290 pycom15g23390
rosa_chinensis	RchiOBHm_Chr2g0102791
rosa_laevigata	RLG00000017179
rosa_roxburghii	Rroxscaffold_2G00140320
rosa_rugosa	Rorug02G0109400 Rorug02G0109500 Rorug02G0109500
rosa_samantha	Rh2AG157900 Rh2BG164400 Rh2CG164100 Rh2DG163200
rosa_wichuraiana	Rw2G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	327
AciI	CCGC	4 cut(s)	35, 138, 396, 665
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	226, 251, 589
AgsI	TTSAA	1 cut(s)	625
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	4 cut(s)	139, 155, 332, 565
ApeKI	GCWGC	1 cut(s)	607
ApoI	RAATTY	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	565
AsuC2I	CCSGG	2 cut(s)	206, 612
AsuHPI	GGTGA	1 cut(s)	626
AsuII	TTCGAA	1 cut(s)	105
AvaI	CYCGRG	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	206
BaeI	ACNNNNGTAYC	2 cut(s)	455, 488
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	165, 189
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	2 cut(s)	206, 612
BcoDI	GTCTC	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	3 cut(s)	35, 139, 608
BlsI	GCNGC	3 cut(s)	36, 140, 609
Bme1390I	CCNGG	3 cut(s)	206, 297, 612
BmeT110I	CYCGRG	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	4 cut(s)	176, 243, 497, 566
BmrFI	CCNGG	3 cut(s)	206, 297, 612
BmsI	GCATC	2 cut(s)	64, 493
Bpu10I	CCTNAGC	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	105
BpuMI	CCSGG	2 cut(s)	206, 612
BsaJI	CCNNGG	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 251, 589
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	296
BseLI	CCNNNNNNNGG	3 cut(s)	226, 251, 589
BseMII	CTCAG	1 cut(s)	599
BseRI	GAGGAG	2 cut(s)	339, 342
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	619
BshFI	GGCC	4 cut(s)	141, 157, 334, 567
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	206, 590, 611
BslI	CCNNNNNNNGG	3 cut(s)	226, 251, 589
BsmAI	GTCTC	1 cut(s)	75
BsnI	GGCC	4 cut(s)	141, 157, 334, 567
BsoBI	CYCGRG	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	123, 281, 300, 657
BspACI	CCGC	4 cut(s)	35, 138, 396, 665
BspANI	GGCC	4 cut(s)	141, 157, 334, 567
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	4 cut(s)	176, 243, 497, 566
BspPI	GGATC	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	4 cut(s)	123, 281, 300, 657
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	3 cut(s)	201, 468, 511
BstAPI	GCANNNNNTGC	2 cut(s)	51, 99
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	32, 155
BstDEI	CTNAG	1 cut(s)	585
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	4 cut(s)	126, 284, 303, 660
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	4 cut(s)	123, 281, 300, 657
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 74, 99, 159, 210
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	3 cut(s)	204, 295, 610
BstSFI	CTRYAG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	619
BsuRI	GGCC	4 cut(s)	141, 157, 334, 567
BtrI	CACGTC	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	32, 155
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	565
CseI	GACGC	2 cut(s)	274, 531
Csp6I	GTAC	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	131, 166
CviAII	CATG	2 cut(s)	391, 569
CviJI	RGCY	9 cut(s)	113, 141, 157, 175, 218, 334, 567, 589, 610
CviKI_1	RGCY	9 cut(s)	113, 141, 157, 175, 218, 334, 567, 589, 610
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	4 cut(s)	125, 283, 302, 659
DpnII	GATC	4 cut(s)	123, 281, 300, 657
EaeI	YGGCCR	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	394, 572
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FatI	CATG	2 cut(s)	390, 568
Fnu4HI	GCNGC	3 cut(s)	35, 139, 608
Fsp4HI	GCNGC	3 cut(s)	35, 139, 608
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	3 cut(s)	35, 139, 608
HaeIII	GGCC	4 cut(s)	141, 157, 334, 567
HapII	CCGG	3 cut(s)	206, 590, 611
HgaI	GACGC	2 cut(s)	274, 531
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	394, 572
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	20, 387
HpaII	CCGG	3 cut(s)	206, 590, 611
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	462
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	472
HpyCH4III	ACNGT	3 cut(s)	201, 468, 511
HpyCH4IV	ACGT	2 cut(s)	47, 437
HpyCH4V	TGCA	5 cut(s)	77, 93, 213, 419, 449
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 74, 99, 159, 210
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	2 cut(s)	47, 437
Hsp92II	CATG	2 cut(s)	394, 572
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	4 cut(s)	123, 281, 300, 657
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	2 cut(s)	64, 493
MaeII	ACGT	2 cut(s)	47, 437
MaeIII	GTNAC	2 cut(s)	59, 428
MalI	GATC	4 cut(s)	125, 283, 302, 659
MboI	GATC	4 cut(s)	123, 281, 300, 657
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	3 cut(s)	107, 190, 373
MlyI	GAGTC	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	523
MseI	TTAA	2 cut(s)	477, 682
MspI	CCGG	3 cut(s)	206, 590, 611
MspR9I	CCNGG	3 cut(s)	206, 297, 612
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	5 cut(s)	51, 74, 99, 159, 210
NciI	CCSGG	2 cut(s)	206, 612
NdeII	GATC	4 cut(s)	123, 281, 300, 657
NlaIII	CATG	2 cut(s)	394, 572
NlaIV	GGNNCC	4 cut(s)	176, 243, 497, 566
NsbI	TGCGCA	1 cut(s)	327
NspV	TTCGAA	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	36, 140, 609
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	4 cut(s)	176, 243, 497, 566
PspPI	GGNCC	1 cut(s)	565
PsrI	GAACNNNNNNTAC	2 cut(s)	479, 511
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	477, 682
SatI	GCNGC	3 cut(s)	35, 139, 608
Sau3AI	GATC	4 cut(s)	123, 281, 300, 657
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	3 cut(s)	206, 297, 612
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	4 cut(s)	50, 147, 440, 532
SfaNI	GCATC	2 cut(s)	64, 493
SfcI	CTRYAG	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	105
Sse9I	AATT	3 cut(s)	107, 190, 373
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	4 cut(s)	35, 138, 396, 665
SspI	AATATT	1 cut(s)	97
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	3 cut(s)	204, 295, 610
TaaI	ACNGT	3 cut(s)	201, 468, 511
TaiI	ACGT	2 cut(s)	50, 440
TaqI	TCGA	2 cut(s)	105, 188
TasI	AATT	3 cut(s)	107, 190, 373
TauI	GCSGC	2 cut(s)	37, 141
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	2 cut(s)	477, 682
Tru9I	TTAA	2 cut(s)	477, 682
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	1 cut(s)	607
TspDTI	ATGAA	2 cut(s)	379, 543
TspRI	CASTG	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.