Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010809

Physical Location & Seq

Genomic Coordinates Reverse (-)

16060029 .. 16061805

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G148100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAAGTGGTTTTGGGGAATCAACAAGCGTGCCACCTCAAAGCCCGTCTTGCTCGGGCAATAATGCCAATGATGTGGGCGATTTTGAATGCAATATCTGCTTTGACTTAGCCCAAGACCCAATCATAACCCTTTGTGGTCACCTCTTCTGCTGGCCTTGCCTGTACAGATGGCTCCACCATCACTCGCATTCCCAAGAATGCCCGGTTTGCAAGGCCCTCGTACAAGAGGAGAAGTTGGTTCCTCTTTATGGTAGGGGCAAGACGCAAACTGATCCAAGATCAAAGTCATATCCAGGCATCAATATTCCAAATCGCCCAGCTGGGCAGAGGCCTCAAACTGCCCCGCCTCCGGAGACCAATCAGTTTACCAATTATGGCTCTGGATTCATGGGGGGATTTGTACCAATGGCAACTGCGAGGATTGGTAACTTCACATTGGCCACTGCATTTGGTGGTCTGATACCGTCATTGCTTAACATTCATTATCATGGGTTCCCGGATGCTACTGTGTATGGAACAACTTCTGGTTTCCCTTATGGGTTCAGTTCATTTCACGGGGGCCATGCTCACGGATTCCCTCAGCCGGCAAGTCAAAGGCAGCAGGTTGACAATGTTTTGAAGAATCTGTTTTTGTTAATTGGTGTCTTTGTGATCCTTGCGCTGATTTGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

226

Amino Acids

24.47

Weight (kDa)

6.77

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23780 AT2G23780 AT2G23780
fragaria_vesca	FvH4_1g14110
malus_domestica	MD02G1155200.v1.1
prunus_persica	Prupe.7G148100_v2.0.a1 Prupe.7G148100_v2.0.a1
pyrus_communis	pycom02g12290 pycom15g23390
rosa_chinensis	RchiOBHm_Chr2g0102791
rosa_laevigata	RLG00000017179
rosa_roxburghii	Rroxscaffold_2G00140320
rosa_rugosa	Rorug02G0109400 Rorug02G0109500 Rorug02G0109500
rosa_samantha	Rh2AG157900 Rh2BG164400 Rh2CG164100 Rh2DG163200
rosa_wichuraiana	Rw2G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	595
AccIII	TCCGGA	1 cut(s)	352
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	269, 649
AcoI	YGGCCR	1 cut(s)	441
AfaI	GTAC	3 cut(s)	167, 225, 405
AfiI	CCNNNNNNNGG	3 cut(s)	251, 352, 586
AgsI	TTSAA	2 cut(s)	89, 622
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	2 cut(s)	269, 649
Ama87I	CYCGRG	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	5 cut(s)	155, 216, 332, 441, 562
ApeKI	GCWGC	1 cut(s)	601
Asp700I	GAANNNNTTC	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	2 cut(s)	217, 562
AsuC2I	CCSGG	2 cut(s)	206, 500
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	443
BbvCI	CCTCAGC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	165, 189
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	2 cut(s)	206, 500
BcoDI	GTCTC	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	595
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	3 cut(s)	206, 297, 500
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	217, 562
BmiI	GGNNCC	4 cut(s)	176, 243, 497, 563
BmrFI	CCNGG	3 cut(s)	206, 297, 500
BmsI	GCATC	2 cut(s)	309, 493
Bpu10I	CCTNAGC	1 cut(s)	582
BpuMI	CCSGG	2 cut(s)	206, 500
BsaI	GGTCTC	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 352, 586
Bse118I	RCCGGY	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	470
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	3 cut(s)	251, 352, 586
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	596
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	613
BseYI	CCCAGC	2 cut(s)	319, 323
BshFI	GGCC	5 cut(s)	157, 218, 334, 443, 564
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	4 cut(s)	206, 353, 500, 587
BslI	CCNNNNNNNGG	3 cut(s)	251, 352, 586
BsmAI	GTCTC	1 cut(s)	350
BsmI	GAATGC	3 cut(s)	95, 190, 206
BsnI	GGCC	5 cut(s)	157, 218, 334, 443, 564
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	55
Bsp13I	TCCGGA	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	274, 281, 654
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	5 cut(s)	157, 218, 334, 443, 564
BspCNI	CTCAG	1 cut(s)	595
BspEI	TCCGGA	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	176, 243, 497, 563
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	2 cut(s)	269, 649
BspTNI	GGTCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	586
BssMI	GATC	3 cut(s)	274, 281, 654
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	468, 511
Bst6I	CTCTTC	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	32, 155, 588
BstDEI	CTNAG	2 cut(s)	109, 582
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	3 cut(s)	277, 284, 657
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	3 cut(s)	274, 281, 654
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 99, 159, 210
BstNI	CCWGG	1 cut(s)	297
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	3 cut(s)	204, 295, 498
BstV1I	GCAGC	1 cut(s)	613
BstXI	CCANNNNNNTGG	1 cut(s)	76
BsuRI	GGCC	5 cut(s)	157, 218, 334, 443, 564
BtsCI	GGATG	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	3 cut(s)	32, 155, 588
CfoI	GCGC	1 cut(s)	664
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	217, 562
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	166, 224, 404
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	3 cut(s)	391, 491, 566
CviQI	GTAC	3 cut(s)	166, 224, 404
DdeI	CTNAG	2 cut(s)	109, 582
DpnI	GATC	3 cut(s)	276, 283, 656
DpnII	GATC	3 cut(s)	274, 281, 654
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	55
Eco91I	GGTNACC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	394, 494, 569
FaiI	YATR	9 cut(s)	128, 252, 292, 378, 392, 492, 516, 540, 567
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FatI	CATG	3 cut(s)	390, 490, 565
FauI	CCCGC	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	1 cut(s)	602
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	1 cut(s)	602
GsaI	CCCAGC	2 cut(s)	323, 327
HaeIII	GGCC	5 cut(s)	157, 218, 334, 443, 564
HapII	CCGG	4 cut(s)	206, 353, 500, 587
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	3 cut(s)	394, 494, 569
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	20, 387, 576, 625
HpaII	CCGG	4 cut(s)	206, 353, 500, 587
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	369, 610
Hpy188I	TCNGA	1 cut(s)	462
Hpy188III	TCNNGA	2 cut(s)	353, 384
Hpy8I	GTNNAC	2 cut(s)	369, 610
HpyCH4III	ACNGT	2 cut(s)	468, 511
HpyCH4V	TGCA	3 cut(s)	93, 213, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 99, 159, 210
HpyF3I	CTNAG	2 cut(s)	109, 582
Hsp92II	CATG	3 cut(s)	394, 494, 569
HspAI	GCGC	1 cut(s)	662
Kpn2I	TCCGGA	1 cut(s)	352
KroI	GCCGGC	1 cut(s)	586
KroNI	GCCGGC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	274, 281, 654
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	2 cut(s)	309, 493
MaeIII	GTNAC	2 cut(s)	140, 428
MalI	GATC	3 cut(s)	276, 283, 656
MboI	GATC	3 cut(s)	274, 281, 654
MboII	GAAGA	2 cut(s)	139, 634
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	2 cut(s)	373, 639
MluNI	TGGCCA	1 cut(s)	443
Mox20I	TGGCCA	1 cut(s)	443
MroI	TCCGGA	1 cut(s)	352
MroNI	GCCGGC	1 cut(s)	586
MroXI	GAANNNNTTC	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	477, 638
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	4 cut(s)	206, 353, 500, 587
MspR9I	CCNGG	3 cut(s)	206, 297, 500
Mva1269I	GAATGC	3 cut(s)	95, 190, 206
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	51, 99, 159, 210
NaeI	GCCGGC	1 cut(s)	588
NciI	CCSGG	2 cut(s)	206, 500
NdeII	GATC	3 cut(s)	274, 281, 654
NgoMIV	GCCGGC	1 cut(s)	586
NlaIII	CATG	3 cut(s)	394, 494, 569
NlaIV	GGNNCC	4 cut(s)	176, 243, 497, 563
NmuCI	GTSAC	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	334
PctI	GAATGC	3 cut(s)	95, 190, 206
PdiI	GCCGGC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	4 cut(s)	20, 387, 576, 625
PfoI	TCCNGGA	1 cut(s)	498
PkrI	GCNGC	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	295
PspEI	GGTNACC	1 cut(s)	140
PspFI	CCCAGC	2 cut(s)	319, 323
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	4 cut(s)	176, 243, 497, 563
PspPI	GGNCC	2 cut(s)	217, 562
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	3 cut(s)	167, 225, 405
RsaNI	GTAC	3 cut(s)	166, 224, 404
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	477, 638
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	3 cut(s)	274, 281, 654
Sau96I	GGNCC	2 cut(s)	217, 562
ScrFI	CCNGG	3 cut(s)	206, 297, 500
SetI	ASST	4 cut(s)	40, 147, 325, 609
SfaNI	GCATC	2 cut(s)	309, 493
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	2 cut(s)	373, 639
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	347
SspI	AATATT	1 cut(s)	307
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	3 cut(s)	204, 295, 498
TaaI	ACNGT	2 cut(s)	468, 511
TasI	AATT	2 cut(s)	373, 639
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	4 cut(s)	20, 387, 576, 625
Tru1I	TTAA	2 cut(s)	477, 638
Tru9I	TTAA	2 cut(s)	477, 638
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	379, 473, 540
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.