AT2G27740

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0020154
Physical Location & Seq
Forward (+)
11822513 .. 11823857
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27740.2

Sequence Viewer

Length: 525 bp
ATGGCTACGACAAGACAGATCTTGGAGCAGCCACAATCGCCATTTATTCAACGTATCAAGAGCTCGGGGAACATTAGCATGAATGGCAGTCCTATGATTGATGAGAAAGAAGAGGAGCTTTCACAGTCTGCTTTTGCTTTGTTTAAGGCAAAGGAAGATGAGATTGAGAGGAGGAAGATGGAGGTTAAGGATAGGGTCCAGAAAAAGCTTGGACTCGCTGAGGAAGCTACTAGAAGATTAGCCGAGATTCGGGAAGAGCTTGAAGCTCTTACCGATCCAATGAGAAAAGAGATATCCGCGATAAGGAAAAGAGTCGATGCTATTAACCGAGAACTCAAGCCTTTAGGACAGAGTTGTCAGAGAAAGGAGAGAGAATTCAAAGAAGCACTTGAAGCTTACAATGAAAAGAACAAAGAGAAAGCTATATTTGTTAGCAAGCTAGTTGAGCTGGTCACCGAAAGCGAGAAACTGCGGATGACAAAGCTGGAGGAACTCAGCAAAAGCATTGAAATATCGCTACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

174

Amino Acids

20.24

Weight (kDa)

8.57

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 20 - 122 1.5e-44 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27740
fragaria_vesca FvH4_3g09321
malus_domestica MD12G1019800.v1.1
rosa_samantha Rh3BG202800 Rh3CG193100 Rh3CG200300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 354
AccII CGCG 1 cut(s) 299
AciI CCGC 2 cut(s) 297, 472
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 249, 303
AgsI TTSAA 5 cut(s) 50, 263, 379, 392, 509
Alw21I GWGCWC 1 cut(s) 65
AlwI GGATC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 445
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 172
BfaI CTAG 2 cut(s) 231, 440
BglII AGATCT 1 cut(s) 18
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 303
BseGI GGATG 1 cut(s) 480
BseLI CCNNNNNNNGG 2 cut(s) 249, 303
BseMII CTCAG 2 cut(s) 210, 508
BseRI GAGGAG 2 cut(s) 128, 184
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 249, 303
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 18, 274
BspACI CCGC 2 cut(s) 297, 472
BspCNI CTCAG 2 cut(s) 211, 507
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 249
BssMI GATC 2 cut(s) 18, 274
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 2 cut(s) 105, 249
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 2 cut(s) 219, 494
BstEII GGTNACC 1 cut(s) 451
BstF5I GGATG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 299
BstKTI GATC 2 cut(s) 21, 277
BstMBI GATC 2 cut(s) 18, 274
BstMWI GCNNNNNNNGC 5 cut(s) 37, 84, 224, 392, 445
BstPI GGTNACC 1 cut(s) 451
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BtsCI GGATG 1 cut(s) 480
Cac8I GCNNGC 1 cut(s) 437
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 1 cut(s) 79
DdeI CTNAG 2 cut(s) 219, 494
DpnI GATC 2 cut(s) 20, 276
DpnII GATC 2 cut(s) 18, 274
DrdI GACNNNNNNGTC 1 cut(s) 354
DseDI GACNNNNNNGTC 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 105, 249
EarI CTCTTC 2 cut(s) 105, 249
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 374
EcoRV GATATC 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 1 cut(s) 82
FaiI YATR 3 cut(s) 80, 95, 425
FalI AAGNNNNNCTT 4 cut(s) 102, 134, 372, 404
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 487
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 2 cut(s) 231, 440
GluI GCNGC 1 cut(s) 29
GsuI CTGGAG 1 cut(s) 506
Hin1II CATG 1 cut(s) 82
HindIII AAGCTT 2 cut(s) 206, 393
HinfI GANTC 3 cut(s) 213, 247, 312
HphI GGTGA 1 cut(s) 445
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 3 cut(s) 58, 199, 251
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 84, 224, 392, 445
HpyF3I CTNAG 2 cut(s) 219, 494
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 2 cut(s) 18, 274
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 25, 115
LpnPI CCDG 3 cut(s) 212, 434, 470
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 231, 440
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 451
MalI GATC 2 cut(s) 20, 276
MboI GATC 2 cut(s) 18, 274
MboII GAAGA 5 cut(s) 122, 167, 187, 246, 266
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 1 cut(s) 374
MlyI GAGTC 2 cut(s) 207, 321
MnlI CCTC 6 cut(s) 106, 162, 165, 175, 214, 481
MseI TTAA 3 cut(s) 144, 186, 324
MslI CAYNNNNRTG 1 cut(s) 77
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 5 cut(s) 37, 84, 224, 392, 445
NdeII GATC 2 cut(s) 18, 274
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 197
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 2 cut(s) 207, 320
PpsI GAGTC 2 cut(s) 207, 320
Psp124BI GAGCTC 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 144, 186, 324
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 2 cut(s) 18, 274
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 2 cut(s) 207, 321
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 1 cut(s) 374
SsiI CCGC 2 cut(s) 297, 472
SspMI CTAG 2 cut(s) 231, 440
SstI GAGCTC 1 cut(s) 65
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 315
TasI AATT 1 cut(s) 374
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 3 cut(s) 144, 186, 324
Tru9I TTAA 3 cut(s) 144, 186, 324
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 2 cut(s) 95, 417
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 2 cut(s) 231, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.