Rh3BG202800

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0020154
Physical Location & Seq
Reverse (-)
18097011 .. 18107634
10624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG202800.1

Sequence Viewer

Length: 345 bp
ATGTTTGTGGAATCAAGTGAACCTGCAACTCAAAAGAAACCCAAGATAAGTCCTAAACCCAGACGCTTTGTCAAACATGAGCTTGAAGGGCTTTCAGATCCAATGAGGAAGGAGGTTTCACTGGTTCGTAAGAAGATCGATACAGTTAACAAGGAGTTAAAGCCACTGGGACAAAGCTGCCAGAAGAAGGAAAAAGAATACAGAGAAGCACTTGAGGCTTTCAACGAAAAGAACAGGGAAAAAGTACAGCTCATTACAAAACTGATGGAGCTGGTGGGTGAAAGTGAGAAGATGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACATTGATTCAATGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

114

Amino Acids

13.39

Weight (kDa)

9.52

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 23 - 112 3.9e-48 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27740
fragaria_vesca FvH4_3g09321
malus_domestica MD12G1019800.v1.1
rosa_samantha Rh3BG202800 Rh3CG193100 Rh3CG200300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 92
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 3 cut(s) 86, 223, 336
AhdI GACNNNNNGTC 1 cut(s) 68
AluBI AGCT 6 cut(s) 82, 177, 250, 271, 307, 316
AluI AGCT 6 cut(s) 82, 177, 250, 271, 307, 316
AlwI GGATC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 290
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 1 cut(s) 178
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 179
BmeRI GACNNNNNGTC 1 cut(s) 68
BmrI ACTGGG 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 126, 171
BseCI ATCGAT 1 cut(s) 138
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 2 cut(s) 126, 171
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 164
BshVI ATCGAT 1 cut(s) 138
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 97, 135
Bsp1720I GCTNAGC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 309
BspDI ATCGAT 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 126, 171
BssMI GATC 2 cut(s) 97, 135
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 2 cut(s) 100, 138
BstMBI GATC 2 cut(s) 97, 135
BstMWI GCNNNNNNNGC 3 cut(s) 88, 215, 313
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 138
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 119, 164
BveI ACCTGC 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 245
CviAII CATG 1 cut(s) 77
CviJI RGCY 9 cut(s) 82, 91, 163, 177, 218, 250, 271, 307, 316
CviKI_1 RGCY 9 cut(s) 82, 91, 163, 177, 218, 250, 271, 307, 316
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 317
DpnI GATC 2 cut(s) 99, 137
DpnII GATC 2 cut(s) 97, 135
DriI GACNNNNNGTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 68
FaeI CATG 1 cut(s) 80
FaiI YATR 1 cut(s) 78
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 329
HgaI GACGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 80
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 11, 332
HpaI GTTAAC 1 cut(s) 148
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 20, 148
Hpy188I TCNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 20, 148
HpyAV CCTTC 3 cut(s) 80, 103, 181
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 26, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 215, 313
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 1 cut(s) 80
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 97, 135
LmnI GCTCC 2 cut(s) 268, 313
LpnPI CCDG 8 cut(s) 36, 73, 107, 152, 194, 220, 257, 293
Lsp1109I GCAGC 1 cut(s) 164
MalI GATC 2 cut(s) 99, 137
MboI GATC 2 cut(s) 97, 135
MboII GAAGA 4 cut(s) 145, 196, 301, 313
MflI RGATCY 1 cut(s) 97
MnlI CCTC 5 cut(s) 99, 106, 208, 288, 304
MseI TTAA 2 cut(s) 147, 158
MwoI GCNNNNNNNGC 3 cut(s) 88, 215, 313
NdeII GATC 2 cut(s) 97, 135
NlaIII CATG 1 cut(s) 80
PfeI GAWTC 2 cut(s) 11, 332
PkrI GCNGC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SaqAI TTAA 2 cut(s) 147, 158
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 2 cut(s) 97, 135
SetI ASST 8 cut(s) 25, 84, 117, 179, 252, 273, 309, 318
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 138
TatI WGTACW 1 cut(s) 244
TfiI GAWTC 2 cut(s) 11, 332
Tru1I TTAA 2 cut(s) 147, 158
Tru9I TTAA 2 cut(s) 147, 158
TscAI CASTG 2 cut(s) 126, 171
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 126, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.