Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015810

Physical Location & Seq

Genomic Coordinates Reverse (-)

11960571 .. 11963440

Gene Structure 2870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGCGGACGTTAGAAACCCTACAAAAAATCATCATGGTCATCATCATCTTCATGCTCTCTTGATCCCATATCCATTTCAAGGGCATGTAAACCCATTTGTACACTTAGCCATCAAGCTCGCGTCACAGGGGATCACCGTCACTTTCGTCAACACTCATTACATCCACCACCAGATCACAAACGGCTCCGATGGAGATATTTTCGCTGGAGTTAGGTCAGAGTCTGGCCTTGACATAAGGTACGCGACGGTTTCCGATGGTTTACCGGTCGGATTTGACCGGTCGTTGAACCATGACACGTACCAATCGTCGCTGTTGCACGTGTTCTATGCGCATGTGGAAGAGCTTGTGGCGAGTCTTGTTGGAGGAGACGGCGGTGTGAATGTGATGATCGCCGACACATTCTTTGTTTGGCCGTCTGTGGTGGCTAGGAAGTTTGGTTTGGTTTGTGTCTCGTTTTGGACCGAAGCTGCTTTAGTATTTTCACTTTATTACCATATGGATCTGCTTCGGATTCATGGCCATTTTGGTGCTCAAGAAACCCGCAGCGATCTAATCGACTACATTCCCGGAGTCGCCGCAATTAACCCAAAAGACACGGCGTCGTATCTTCAAGAAACCGACACGTCATCAGTAGTTCATCAAATCATCTTCAAAGCATTCGAAGACGTGAAAAAAGTCGATTTTGTACTCTGCAACACAATTCAGCAATTCGAAGACAAAACAATCAAAGCCCTAAACACAAAAATCCCATTTTACGCAATCGGACCAATCATACCATTCAATAACCAAACCGGTTCAGTCACAACCTCACTCTGGTCTGAATCAGATTGTACACAATGGCTCAACACTAAACCAAAAAGCTCCGTACTTTATATCTCCTTTGGTAGTTACGCTCATGTCACAAAGAAGGATCTTGTTGAGATAGCTCACGGGATTTTGTTGAGTAAAGTTAATTTCGTTTGGGTGGTGAGACCAGACATTGTTAGTTCAGACGAAACCAATCCATTACCAGAAGGGTTTGAAACAGAAGCTGGAGATCGTGGGATTGTAATACCATGGTGTTGTCAAATGACGGTTTTGTCACATGAGAGTGTTGGTGGGTTTTTGACACATTGTGGTTGGAACTCGATATTGGAGACGATTTGGTGTGAGGTTCCTGTGTTGTGTTTTCCATTGTTGACTGATCAGGTTACGAATAGGAAGCTTGTGGTTGATGATTGGGAGATTGGGATTAATCTTTGTGAAGATAAGAGTGATTTTGGTAGAGATGAAGTTGGGAGGAATATTAACCGTTTGATGTGTGGTGTTTCGAAAGAGAAGATCGGACGGGTTAAAATGAGTTTGGAAGGTGCGGTGAGAAACAGTGGATCTTCTTCGGAGATGAATTTAGGTTTGTTTATTGATGGACTTTTGTCTAAGGTTGGTTTATCTAATGGGAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

482

Amino Acids

53.37

Weight (kDa)

5.78

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	20 - 59	1.7e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	278 - 408	7.4e-16	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28080
fragaria_vesca	FvH4_3g31170
malus_domestica	MD03G1125900.v1.1 MD03G1126200.v1.1
prunus_persica	Prupe.6G108000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0057811
rosa_laevigata	RLG00000035179
rosa_multiflora	Rmu_sc0010457.1_g000003
rosa_roxburghii	Rroxscaffold_1G00022690
rosa_rugosa	Rorug05G0309700
rosa_samantha	Rh5AG378000 Rh5BG389100 Rh5CG413400 Rh5DG404000
rosa_wichuraiana	Rw5G035650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1081
Acc16I	TGCGCA	1 cut(s)	333
AccII	CGCG	2 cut(s)	122, 245
AciI	CCGC	5 cut(s)	5, 375, 544, 579, 1355
AclWI	GGATC	5 cut(s)	58, 140, 510, 921, 1378
AcoI	YGGCCR	2 cut(s)	413, 520
AcsI	RAATTY	1 cut(s)	1387
AcvI	CACGTG	1 cut(s)	322
AcyI	GRCGYC	1 cut(s)	602
AdeI	CACNNNGTG	1 cut(s)	1118
AfaI	GTAC	6 cut(s)	102, 242, 302, 690, 835, 870
AfiI	CCNNNNNNNGG	2 cut(s)	80, 816
AflIII	ACRYGT	3 cut(s)	297, 321, 624
AgeI	ACCGGT	3 cut(s)	265, 279, 794
AgsI	TTSAA	6 cut(s)	80, 289, 614, 655, 784, 1025
AhdI	GACNNNNNGTC	1 cut(s)	601
AjiI	CACGTC	2 cut(s)	627, 670
AjuI	GAANNNNNNNTTGG	4 cut(s)	425, 457, 1118, 1150
AluBI	AGCT	8 cut(s)	118, 346, 470, 864, 929, 1034, 1207, 1445
AluI	AGCT	8 cut(s)	118, 346, 470, 864, 929, 1034, 1207, 1445
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	4 cut(s)	363, 457, 967, 1133
AlwI	GGATC	5 cut(s)	58, 140, 510, 921, 1378
AlwNI	CAGNNNCTG	2 cut(s)	224, 1034
AoxI	GGCC	3 cut(s)	226, 413, 520
ApeKI	GCWGC	2 cut(s)	470, 546
ApoI	RAATTY	1 cut(s)	1387
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AseI	ATTAAT	1 cut(s)	1236
AsiGI	ACCGGT	3 cut(s)	265, 279, 794
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	462, 767
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	127, 982, 1369
AsuII	TTCGAA	3 cut(s)	663, 714, 1313
AvaII	GGWCC	2 cut(s)	462, 767
BalI	TGGCCA	1 cut(s)	522
BbrPI	CACGTG	1 cut(s)	322
BbsI	GAAGAC	2 cut(s)	672, 723
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	457, 558
BccI	CCATC	4 cut(s)	119, 185, 251, 1400
BceAI	ACGGC	4 cut(s)	199, 388, 400, 615
BclI	TGATCA	1 cut(s)	1186
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	4 cut(s)	363, 457, 967, 1133
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	3 cut(s)	471, 547, 579
BlsI	GCNGC	3 cut(s)	472, 548, 580
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	2 cut(s)	462, 767
BmeRI	GACNNNNNGTC	1 cut(s)	601
BmgBI	CACGTC	2 cut(s)	627, 670
BmgT120I	GGNCC	2 cut(s)	462, 767
BmiI	GGNNCC	2 cut(s)	187, 1158
BmrFI	CCNGG	1 cut(s)	570
BoxI	GACNNNNGTC	1 cut(s)	1414
BpiI	GAAGAC	2 cut(s)	672, 723
BpmI	CTGGAG	2 cut(s)	228, 1056
Bpu14I	TTCGAA	3 cut(s)	663, 714, 1313
BpuEI	CTTGAG	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	570
BsaAI	YACGTR	2 cut(s)	300, 322
BsaHI	GRCGYC	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	967
BsaJI	CCNNGG	1 cut(s)	1058
BsaWI	WCCGGW	3 cut(s)	265, 279, 794
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 816
Bse118I	RCCGGY	3 cut(s)	265, 279, 794
BseDI	CCNNGG	1 cut(s)	1058
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	80, 816
BseRI	GAGGAG	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	457, 558
Bsh1236I	CGCG	2 cut(s)	122, 245
Bsh1285I	CGRYCG	2 cut(s)	270, 284
BshFI	GGCC	3 cut(s)	228, 415, 522
BshTI	ACCGGT	3 cut(s)	265, 279, 794
BsiEI	CGRYCG	2 cut(s)	270, 284
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	4 cut(s)	266, 280, 570, 795
BslI	CCNNNNNNNGG	2 cut(s)	80, 816
BsmAI	GTCTC	4 cut(s)	363, 457, 967, 1133
BsmBI	CGTCTC	2 cut(s)	363, 1133
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	228, 415, 522
Bso31I	GGTCTC	1 cut(s)	967
Bsp119I	TTCGAA	3 cut(s)	663, 714, 1313
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp1407I	TGTACA	2 cut(s)	100, 833
Bsp19I	CCATGG	1 cut(s)	1058
BspACI	CCGC	5 cut(s)	5, 375, 544, 579, 1355
BspANI	GGCC	3 cut(s)	228, 415, 522
BspFNI	CGCG	2 cut(s)	122, 245
BspLI	GGNNCC	2 cut(s)	187, 1158
BspPI	GGATC	5 cut(s)	58, 140, 510, 921, 1378
BspQI	GCTCTTC	1 cut(s)	336
BspT104I	TTCGAA	3 cut(s)	663, 714, 1313
BspTNI	GGTCTC	1 cut(s)	967
BsrFI	RCCGGY	3 cut(s)	265, 279, 794
BsrGI	TGTACA	2 cut(s)	100, 833
BssAI	RCCGGY	3 cut(s)	265, 279, 794
BssECI	CCNNGG	1 cut(s)	1058
BssNI	GRCGYC	1 cut(s)	602
BssT1I	CCWWGG	1 cut(s)	1058
Bst4CI	ACNGT	5 cut(s)	139, 250, 1078, 1295, 1367
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	602
BstAUI	TGTACA	2 cut(s)	100, 833
BstBAI	YACGTR	2 cut(s)	300, 322
BstBI	TTCGAA	3 cut(s)	663, 714, 1313
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	106, 1419
BstDSI	CCRYGG	1 cut(s)	1058
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	122, 245
BstHHI	GCGC	1 cut(s)	334
BstMAI	GTCTC	4 cut(s)	363, 457, 967, 1133
BstMCI	CGRYCG	2 cut(s)	270, 284
BstNSI	RCATGY	2 cut(s)	89, 338
BstPAI	GACNNNNGTC	1 cut(s)	1414
BstSCI	CCNGG	1 cut(s)	568
BstUI	CGCG	2 cut(s)	122, 245
BstV1I	GCAGC	2 cut(s)	457, 558
BstV2I	GAAGAC	2 cut(s)	672, 723
BstX2I	RGATCY	3 cut(s)	502, 913, 1370
BstYI	RGATCY	3 cut(s)	502, 913, 1370
BsuRI	GGCC	3 cut(s)	228, 415, 522
BtgI	CCRYGG	1 cut(s)	1058
BtrI	CACGTC	2 cut(s)	627, 670
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	1372
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	2 cut(s)	224, 1034
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	3 cut(s)	265, 279, 794
Cfr13I	GGNCC	2 cut(s)	462, 767
CseI	GACGC	2 cut(s)	111, 591
Csp6I	GTAC	6 cut(s)	101, 241, 301, 689, 834, 869
CspAI	ACCGGT	3 cut(s)	265, 279, 794
CviAII	CATG	9 cut(s)	35, 53, 86, 293, 335, 518, 899, 1059, 1088
CviQI	GTAC	6 cut(s)	101, 241, 301, 689, 834, 869
DdeI	CTNAG	2 cut(s)	106, 1419
DraIII	CACNNNGTG	1 cut(s)	1118
DrdI	GACNNNNNNGTC	1 cut(s)	1081
DriI	GACNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	1081
EaeI	YGGCCR	2 cut(s)	413, 520
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	1058
Eco31I	GGTCTC	1 cut(s)	967
Eco47I	GGWCC	2 cut(s)	462, 767
Eco72I	CACGTG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	1058
ErhI	CCWWGG	1 cut(s)	1058
Esp3I	CGTCTC	2 cut(s)	363, 1133
FaeI	CATG	9 cut(s)	38, 56, 89, 296, 338, 521, 902, 1062, 1091
FatI	CATG	9 cut(s)	34, 52, 85, 292, 334, 517, 898, 1058, 1087
FauI	CCCGC	1 cut(s)	551
FauNDI	CATATG	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	1186
Fnu4HI	GCNGC	3 cut(s)	471, 547, 579
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	471, 547, 579
FspAI	RTGCGCAY	1 cut(s)	333
FspBI	CTAG	1 cut(s)	429
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	3 cut(s)	471, 547, 579
GsuI	CTGGAG	2 cut(s)	228, 1056
HaeIII	GGCC	3 cut(s)	228, 415, 522
HapII	CCGG	4 cut(s)	266, 280, 570, 795
HgaI	GACGC	2 cut(s)	111, 591
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	602
Hin1II	CATG	9 cut(s)	38, 56, 89, 296, 338, 521, 902, 1062, 1091
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	2 cut(s)	151, 1182
HindII	GTYRAC	2 cut(s)	151, 1182
HindIII	AAGCTT	2 cut(s)	1205, 1443
HinfI	GANTC	5 cut(s)	221, 355, 514, 573, 824
HpaII	CCGG	4 cut(s)	266, 280, 570, 795
HphI	GGTGA	3 cut(s)	127, 982, 1369
Hpy166II	GTNNAC	6 cut(s)	91, 103, 151, 263, 836, 1182
Hpy188III	TCNNGA	3 cut(s)	61, 536, 614
Hpy8I	GTNNAC	6 cut(s)	91, 103, 151, 263, 836, 1182
Hpy99I	CGWCG	3 cut(s)	250, 313, 607
HpyAV	CCTTC	3 cut(s)	904, 1010, 1343
HpyCH4III	ACNGT	5 cut(s)	139, 250, 1078, 1295, 1367
HpyCH4IV	ACGT	5 cut(s)	9, 299, 321, 626, 669
HpyCH4V	TGCA	2 cut(s)	319, 696
HpyF3I	CTNAG	2 cut(s)	106, 1419
HpySE526I	ACGT	5 cut(s)	9, 299, 321, 626, 669
Hsp92I	GRCGYC	1 cut(s)	602
Hsp92II	CATG	9 cut(s)	38, 56, 89, 296, 338, 521, 902, 1062, 1091
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	1186
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	191, 869
Lsp1109I	GCAGC	2 cut(s)	457, 558
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	5 cut(s)	9, 299, 321, 626, 669
MaeIII	GTNAC	7 cut(s)	123, 139, 802, 890, 901, 1083, 1192
MflI	RGATCY	3 cut(s)	502, 913, 1370
MhlI	GDGCHC	1 cut(s)	535
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	5 cut(s)	582, 702, 710, 955, 1387
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	3 cut(s)	230, 364, 582
MmeI	TCCRAC	3 cut(s)	250, 343, 1103
MnlI	CCTC	4 cut(s)	359, 820, 1147, 1275
Mox20I	TGGCCA	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	6 cut(s)	585, 954, 1236, 1290, 1335, 1447
MslI	CAYNNNNRTG	3 cut(s)	51, 528, 1092
Msp20I	TGGCCA	1 cut(s)	522
MspI	CCGG	4 cut(s)	266, 280, 570, 795
MspR9I	CCNGG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	659
MvnI	CGCG	2 cut(s)	122, 245
NciI	CCSGG	1 cut(s)	570
NcoI	CCATGG	1 cut(s)	1058
NdeI	CATATG	1 cut(s)	498
NlaIII	CATG	9 cut(s)	38, 56, 89, 296, 338, 521, 902, 1062, 1091
NlaIV	GGNNCC	2 cut(s)	187, 1158
NmuCI	GTSAC	5 cut(s)	123, 139, 802, 901, 1083
NsbI	TGCGCA	1 cut(s)	333
NspI	RCATGY	2 cut(s)	89, 338
NspV	TTCGAA	3 cut(s)	663, 714, 1313
PciSI	GCTCTTC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PctI	GAATGC	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	514, 824
PfoI	TCCNGGA	1 cut(s)	568
PinAI	ACCGGT	3 cut(s)	265, 279, 794
PkrI	GCNGC	3 cut(s)	472, 548, 580
PleI	GAGTC	3 cut(s)	229, 363, 581
PmaCI	CACGTG	1 cut(s)	322
PmlI	CACGTG	1 cut(s)	322
PpsI	GAGTC	3 cut(s)	229, 363, 581
Ppu21I	YACGTR	2 cut(s)	300, 322
PshAI	GACNNNNGTC	1 cut(s)	1414
PshBI	ATTAAT	1 cut(s)	1236
PspCI	CACGTG	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	187, 1158
PspPI	GGNCC	2 cut(s)	462, 767
PstNI	CAGNNNCTG	2 cut(s)	224, 1034
PsuI	RGATCY	3 cut(s)	502, 913, 1370
RsaI	GTAC	6 cut(s)	102, 242, 302, 690, 835, 870
RsaNI	GTAC	6 cut(s)	101, 241, 301, 689, 834, 869
RseI	CAYNNNNRTG	3 cut(s)	51, 528, 1092
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	6 cut(s)	585, 954, 1236, 1290, 1335, 1447
SatI	GCNGC	3 cut(s)	471, 547, 579
Sau96I	GGNCC	2 cut(s)	462, 767
SchI	GAGTC	3 cut(s)	230, 364, 582
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	1 cut(s)	535
SfuI	TTCGAA	3 cut(s)	663, 714, 1313
SinI	GGWCC	2 cut(s)	462, 767
SmiMI	CAYNNNNRTG	3 cut(s)	51, 528, 1092
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
Sse9I	AATT	5 cut(s)	582, 702, 710, 955, 1387
SsiI	CCGC	5 cut(s)	5, 375, 544, 579, 1355
SspI	AATATT	1 cut(s)	1288
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	1 cut(s)	1058
TaaI	ACNGT	5 cut(s)	139, 250, 1078, 1295, 1367
TaiI	ACGT	5 cut(s)	12, 302, 324, 629, 672
TaqI	TCGA	6 cut(s)	558, 663, 681, 714, 1130, 1313
TaqII	GACCGA	1 cut(s)	479
TasI	AATT	5 cut(s)	582, 702, 710, 955, 1387
TatI	WGTACW	3 cut(s)	100, 688, 833
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	514, 824
Tru1I	TTAA	6 cut(s)	585, 954, 1236, 1290, 1335, 1447
Tru9I	TTAA	6 cut(s)	585, 954, 1236, 1290, 1335, 1447
TscAI	CASTG	1 cut(s)	1372
TseFI	GTSAC	5 cut(s)	123, 139, 802, 901, 1083
TseI	GCWGC	2 cut(s)	470, 546
Tsp45I	GTSAC	5 cut(s)	123, 139, 802, 901, 1083
TspDTI	ATGAA	5 cut(s)	41, 506, 629, 1287, 1400
TspGWI	ACGGA	1 cut(s)	856
TspRI	CASTG	1 cut(s)	1372
VpaK11BI	GGWCC	2 cut(s)	462, 767
VspI	ATTAAT	1 cut(s)	1236
XapI	RAATTY	1 cut(s)	1387
XceI	RCATGY	2 cut(s)	89, 338
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.