Rorug05G0309700

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015810
Physical Location & Seq
Reverse (-)
36358354 .. 36362184
3831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0309700.1

Sequence Viewer

Length: 999 bp
ATGCCGGTCGGAGACGAAGTCCAGCTTCGGAACGCCATTCTCTGTACACCAGATCTAAATTTATCAAACAACACTCTTACTGGGAGCATTCCTGCCAACTTTTCCGGTCTTCCACTGCTTCAAAGATTTTCCGTTATACAAACTTTGCAATGGAATAAACTGAGAATTTATTTCGCATGGCAGGTTCTTTTGCGAAAGGCTAGGAACCAGTATACTTGGAAAGGGTTTGGGGCAATCCCTAATGCTTTGCAGGAGCTAAAGGAAGAGGGTCTGAAAGAGAACTTCAATACTTTCCACGGCAATTTCCAGGGCAATGATGATCCAAAATGTTCGCAGGGTTCAGATGATGAGGAAGGTGATGAGAGTGGTCATGCAACTGGGAGTCAGAATGAGAACCCCAGTGTCAATCTCAAATCTTCAGGAAACTCGAAAAATGGTAAATCTTTATTGAACAAAATTGTTGAGCTTAGACCTGCCGGAAAGATTGCTTCAGGCATAACCGAGATACCGTTTTCTATGCATATCAGGCAACCAAAAGAAGATAACCTCGAAAAGTTCTATGAGACGTTCCATGGAGGAAATATTAACATTCAGTATTTAGTGACTGTAGATATATCGAGAGGATACCTGTATAAGTCGTTATCTACAACAATGGAGTTCATAGTTGAAAGTGATAAAGGTGGATTTCGAATCATTGGAAAAATGGCCACTCAATGTTCTTTATCGGATCCTGTTAGTGGTGAACTAACAGTAGAAGCATCTGCAGTTCCAATTTCTTCCATTGATATACACTTGCTTCGTGTAGAGTCAATCCTTCTAGGGGAGAAAATTGTGACTGAGAAGTCTGTGGTTCAGACTACACAGCCAAATATGGAACTATTCTTTCTTTACTCCAACGCCAAGAATATTATCATGAAACTCATAAAGAAGTTAAACCTCAGGTTGGCTGCAGTGCATTTAGTTGACGCCCTCTTCTGTCGGATTGGATTGTTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

332

Amino Acids

36.9

Weight (kDa)

6.61

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps26 PF03643 142 - 223 2.3e-07 Vacuolar protein sorting-associated protein 26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28080
fragaria_vesca FvH4_3g31170
malus_domestica MD03G1125900.v1.1 MD03G1126200.v1.1
prunus_persica Prupe.6G108000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0057811
rosa_laevigata RLG00000035179
rosa_multiflora Rmu_sc0010457.1_g000003
rosa_roxburghii Rroxscaffold_1G00022690
rosa_rugosa Rorug05G0309700
rosa_samantha Rh5AG378000 Rh5BG389100 Rh5CG413400 Rh5DG404000
rosa_wichuraiana Rw5G035650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 841
Acc36I ACCTGC 2 cut(s) 172, 481
AccI GTMKAC 1 cut(s) 212
AclWI GGATC 3 cut(s) 314, 722, 735
AcoI YGGCCR 1 cut(s) 705
AcsI RAATTY 2 cut(s) 58, 165
AcuI CTGAAG 2 cut(s) 402, 474
AcyI GRCGYC 1 cut(s) 966
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 3 cut(s) 737, 820, 943
AgsI TTSAA 4 cut(s) 122, 286, 451, 668
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 3 cut(s) 25, 256, 466
AluI AGCT 3 cut(s) 25, 256, 466
Alw26I GTCTC 2 cut(s) 6, 557
AlwI GGATC 3 cut(s) 314, 722, 735
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 1 cut(s) 947
ApoI RAATTY 2 cut(s) 58, 165
AsuHPI GGTGA 2 cut(s) 368, 752
AsuII TTCGAA 1 cut(s) 688
AxyI CCTNAGG 1 cut(s) 938
BalI TGGCCA 1 cut(s) 707
BamHI GGATCC 1 cut(s) 727
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 934
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 308
BciVI GTATCC 1 cut(s) 617
BcoDI GTCTC 2 cut(s) 6, 557
BfaI CTAG 2 cut(s) 201, 818
BfmI CTRYAG 3 cut(s) 606, 762, 948
BfuAI ACCTGC 2 cut(s) 172, 481
BfuI GTATCC 1 cut(s) 617
BglII AGATCT 1 cut(s) 52
BisI GCNGC 1 cut(s) 948
BlsI GCNGC 1 cut(s) 949
Bme1390I CCNGG 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 206, 729
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 3 cut(s) 90, 387, 393
BmsI GCATC 1 cut(s) 767
BmuI ACTGGG 3 cut(s) 90, 387, 393
BpiI GAAGAC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 688
BsaHI GRCGYC 1 cut(s) 966
BsaJI CCNNGG 3 cut(s) 295, 307, 571
BsaWI WCCGGW 1 cut(s) 104
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 3 cut(s) 737, 820, 943
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 4 cut(s) 85, 208, 382, 399
Bse21I CCTNAGG 1 cut(s) 938
Bse3DI GCAATG 2 cut(s) 155, 319
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 3 cut(s) 295, 307, 571
BseLI CCNNNNNNNGG 3 cut(s) 737, 820, 943
BseMI GCAATG 2 cut(s) 155, 319
BseMII CTCAG 3 cut(s) 152, 828, 952
BseNI ACTGG 4 cut(s) 85, 208, 382, 399
BseXI GCAGC 1 cut(s) 934
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 707
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 3 cut(s) 5, 105, 477
BslI CCNNNNNNNGG 3 cut(s) 737, 820, 943
BsmAI GTCTC 2 cut(s) 6, 557
BsmBI CGTCTC 2 cut(s) 6, 557
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 1 cut(s) 707
Bsp119I TTCGAA 1 cut(s) 688
Bsp1407I TGTACA 1 cut(s) 44
Bsp143I GATC 3 cut(s) 52, 319, 727
Bsp19I CCATGG 1 cut(s) 571
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 3 cut(s) 153, 829, 951
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 2 cut(s) 206, 729
BspMAI CTGCAG 2 cut(s) 766, 952
BspMI ACCTGC 2 cut(s) 172, 481
BspPI GGATC 3 cut(s) 314, 722, 735
BspT104I TTCGAA 1 cut(s) 688
BsrDI GCAATG 2 cut(s) 155, 319
BsrFI RCCGGY 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 44
BsrI ACTGG 4 cut(s) 85, 208, 382, 399
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 3 cut(s) 295, 307, 571
BssMI GATC 3 cut(s) 52, 319, 727
BssNAI GTATAC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 966
BssT1I CCWWGG 1 cut(s) 571
Bst1107I GTATAC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 3 cut(s) 510, 607, 751
Bst6I CTCTTC 2 cut(s) 258, 977
BstACI GRCGYC 1 cut(s) 966
BstAUI TGTACA 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 688
BstDEI CTNAG 4 cut(s) 161, 467, 837, 938
BstDSI CCRYGG 2 cut(s) 295, 571
BstKTI GATC 3 cut(s) 55, 322, 730
BstMAI GTCTC 2 cut(s) 6, 557
BstMBI GATC 3 cut(s) 52, 319, 727
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 3 cut(s) 606, 762, 948
BstV1I GCAGC 1 cut(s) 934
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 2 cut(s) 52, 727
BstYI RGATCY 2 cut(s) 52, 727
BstZ17I GTATAC 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 938
BsuI GTATCC 1 cut(s) 617
BsuRI GGCC 1 cut(s) 707
BtgI CCRYGG 2 cut(s) 295, 571
BtsI GCAGTG 2 cut(s) 113, 957
BtsIMutI CAGTG 3 cut(s) 113, 406, 957
BveI ACCTGC 2 cut(s) 172, 481
CciI TCATGA 1 cut(s) 912
Cfr10I RCCGGY 1 cut(s) 4
CseI GACGC 1 cut(s) 974
Csp6I GTAC 1 cut(s) 45
CviAII CATG 4 cut(s) 177, 371, 572, 913
CviJI RGCY 7 cut(s) 25, 200, 256, 466, 707, 865, 947
CviKI_1 RGCY 7 cut(s) 25, 200, 256, 466, 707, 865, 947
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 4 cut(s) 161, 467, 837, 938
DpnI GATC 3 cut(s) 54, 321, 729
DpnII GATC 3 cut(s) 52, 319, 727
DrdI GACNNNNNNGTC 1 cut(s) 841
DseDI GACNNNNNNGTC 1 cut(s) 841
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 2 cut(s) 258, 977
EarI CTCTTC 2 cut(s) 258, 977
Eco130I CCWWGG 1 cut(s) 571
Eco57I CTGAAG 2 cut(s) 402, 474
Eco81I CCTNAGG 1 cut(s) 938
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 571
EcoT22I ATGCAT 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 571
Esp3I CGTCTC 2 cut(s) 6, 557
FaeI CATG 4 cut(s) 180, 374, 575, 916
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FatI CATG 4 cut(s) 176, 370, 571, 912
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 948
Fsp4HI GCNGC 1 cut(s) 948
FspBI CTAG 2 cut(s) 201, 818
GluI GCNGC 1 cut(s) 948
HaeIII GGCC 1 cut(s) 707
HapII CCGG 3 cut(s) 5, 105, 477
HgaI GACGC 1 cut(s) 974
Hin1I GRCGYC 1 cut(s) 966
Hin1II CATG 4 cut(s) 180, 374, 575, 916
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HinfI GANTC 3 cut(s) 382, 690, 806
HpaII CCGG 3 cut(s) 5, 105, 477
HphI GGTGA 2 cut(s) 368, 752
Hpy166II GTNNAC 5 cut(s) 47, 213, 743, 964, 993
Hpy188I TCNGA 8 cut(s) 11, 30, 273, 343, 387, 727, 855, 981
Hpy188III TCNNGA 3 cut(s) 420, 618, 913
Hpy8I GTNNAC 5 cut(s) 47, 213, 743, 964, 993
HpyAV CCTTC 2 cut(s) 347, 824
HpyCH4III ACNGT 3 cut(s) 510, 607, 751
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 7 cut(s) 148, 250, 374, 520, 764, 950, 955
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 4 cut(s) 161, 467, 837, 938
HpySE526I ACGT 1 cut(s) 566
Hsp92I GRCGYC 1 cut(s) 966
Hsp92II CATG 4 cut(s) 180, 374, 575, 916
Kzo9I GATC 3 cut(s) 52, 319, 727
LmnI GCTCC 2 cut(s) 84, 253
Lsp1109I GCAGC 1 cut(s) 934
LweI GCATC 1 cut(s) 767
MaeI CTAG 2 cut(s) 201, 818
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 2 cut(s) 601, 832
MalI GATC 3 cut(s) 54, 321, 729
MboI GATC 3 cut(s) 52, 319, 727
MboII GAAGA 6 cut(s) 101, 275, 408, 551, 768, 964
MflI RGATCY 2 cut(s) 52, 727
MlsI TGGCCA 1 cut(s) 707
MluCI AATT 6 cut(s) 58, 165, 301, 456, 771, 828
MluNI TGGCCA 1 cut(s) 707
MlyI GAGTC 2 cut(s) 391, 815
MmeI TCCRAC 2 cut(s) 918, 959
MnlI CCTC 7 cut(s) 259, 343, 557, 569, 614, 947, 980
Mox20I TGGCCA 1 cut(s) 707
Mph1103I ATGCAT 1 cut(s) 522
MscI TGGCCA 1 cut(s) 707
MseI TTAA 3 cut(s) 585, 932, 997
Msp20I TGGCCA 1 cut(s) 707
MspI CCGG 3 cut(s) 5, 105, 477
MspR9I CCNGG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 526
NcoI CCATGG 1 cut(s) 571
NdeII GATC 3 cut(s) 52, 319, 727
NlaIII CATG 4 cut(s) 180, 374, 575, 916
NlaIV GGNNCC 2 cut(s) 206, 729
NmuCI GTSAC 2 cut(s) 601, 832
NsiI ATGCAT 1 cut(s) 522
NspV TTCGAA 1 cut(s) 688
PagI TCATGA 1 cut(s) 912
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 690
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 949
PleI GAGTC 2 cut(s) 390, 814
PpsI GAGTC 2 cut(s) 390, 814
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 206, 729
PstI CTGCAG 2 cut(s) 766, 952
PsuI RGATCY 2 cut(s) 52, 727
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SaqAI TTAA 3 cut(s) 585, 932, 997
SatI GCNGC 1 cut(s) 948
Sau3AI GATC 3 cut(s) 52, 319, 727
SchI GAGTC 2 cut(s) 391, 815
ScrFI CCNGG 1 cut(s) 308
SfaNI GCATC 1 cut(s) 767
SfcI CTRYAG 3 cut(s) 606, 762, 948
SfuI TTCGAA 1 cut(s) 688
Sse9I AATT 6 cut(s) 58, 165, 301, 456, 771, 828
SspI AATATT 2 cut(s) 583, 907
SspMI CTAG 2 cut(s) 201, 818
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 3 cut(s) 510, 607, 751
TaiI ACGT 1 cut(s) 569
TaqI TCGA 4 cut(s) 428, 549, 617, 688
TasI AATT 6 cut(s) 58, 165, 301, 456, 771, 828
TatI WGTACW 1 cut(s) 44
TfiI GAWTC 1 cut(s) 690
Tru1I TTAA 3 cut(s) 585, 932, 997
Tru9I TTAA 3 cut(s) 585, 932, 997
TscAI CASTG 3 cut(s) 120, 406, 957
TseFI GTSAC 2 cut(s) 601, 832
TseI GCWGC 1 cut(s) 947
Tsp45I GTSAC 2 cut(s) 601, 832
TspDTI ATGAA 2 cut(s) 649, 929
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 3 cut(s) 120, 406, 957
Tth111I GACNNNGTC 1 cut(s) 17
XapI RAATTY 2 cut(s) 58, 165
XmiI GTMKAC 1 cut(s) 212
XspI CTAG 2 cut(s) 201, 818
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.