Rmu_sc0010457.1_g000003

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010457.1
OG0015810
Physical Location & Seq
Forward (+)
7990 .. 9498
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010457.1_g000003.1.cds

Sequence Viewer

Length: 1431 bp
atggcagaatcagataatcaaaagcctcacgccatcttcatcccctaccctctccaaggccatgtaattccatcagtcgagttagcgatcaagctcgcatcacgcggcttcaagatcaccttcgtcaacacccattgcatccaccaccatacctcgaaagcacagccgaaaaccagaggcgacctctttgccgccgcacgtgaagccgggcacgatatagactacaccacggtctccgatggcctccccgttgagtttgaccgctccctcaaccacgaccagttcatggcctctttgttgcacgtgttttccgcgcacgtcgatgaagtggtcgggaaacttgtcaagtcctcggcaagcaccgtacctgttacttgtctgattgccgatactttcttcgtgtggccgggcaaggttgctaagaagtttgatctgctttatgtttccttttggacggagcctgctttggtttattcactctattatcacgttgatcttcttcggagaaatggtcattttgcatgtcatgatgtgcgggaggacaacatagattacatacctggagtgaaatcaattgatcccagggacatgatgtcctatcttcaagaaactgatataacaactgtgtgccaccagatcattctcaatgccttcaaggacgttagaggagcacattatgtcctatgcaacacagcgcaggagatcgaatccgagaccatcgtacccctccatggcaagatccccttctatgcaattggtcctatttttcccaacaggttcaacaagagcatggttgcgactagtctgtggtccgagtcggactgcagtcagtggctgaacaccaaacgcaatggctcagtattgtatgtctcatttggtagctatgcacatgtctccgaatgtgaccttacagagatagctaatggacttgaactcagcaaagtgaactttgtttgggtgctccggccggatattgttagctcggaggacacagatccgctgccctctggctttaaagagcggattagtgaccgggctattattattccgtggtgctgtcagaagtcggtcttggcgcacccggctataggagggtttttgacccattgtgggtggaattctacattggaaagtatttggtgtggtgtaccattgttgtgtttccctttacttactgatcaattcaccaacagaaaactaatagttgatgattggaaggttgggattaatttatgcgatcggaaagtggtcaggagtgagggtgtttcaaagaaaatcaaccatttgatggatgagaaatcaggggatgagttcaggaaagcggttgccaaggttaggaagacattggaagatgcattgacacccaatggatcatctgagagaaatatagacactttcatcaaggatctaaagaccaggattcggaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

476

Amino Acids

53.59

Weight (kDa)

6.57

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28080
fragaria_vesca FvH4_3g31170
malus_domestica MD03G1125900.v1.1 MD03G1126200.v1.1
prunus_persica Prupe.6G108000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0057811
rosa_laevigata RLG00000035179
rosa_multiflora Rmu_sc0010457.1_g000003
rosa_roxburghii Rroxscaffold_1G00022690
rosa_rugosa Rorug05G0309700
rosa_samantha Rh5AG378000 Rh5BG389100 Rh5CG413400 Rh5DG404000
rosa_wichuraiana Rw5G035650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 286, 1288
AccBSI CCGCTC 2 cut(s) 264, 1021
AccII CGCG 2 cut(s) 105, 314
AciI CCGC 9 cut(s) 105, 192, 195, 262, 312, 535, 998, 1021, 1322
AclWI GGATC 5 cut(s) 572, 733, 989, 1378, 1413
AcoI YGGCCR 2 cut(s) 404, 965
AcsI RAATTY 1 cut(s) 1117
AcvI CACGTG 2 cut(s) 200, 304
AfaI GTAC 3 cut(s) 366, 723, 1149
AfiI CCNNNNNNNGG 8 cut(s) 56, 286, 731, 1088, 1110, 1288, 1335, 1422
AflIII ACRYGT 2 cut(s) 303, 889
AgsI TTSAA 6 cut(s) 112, 605, 655, 781, 932, 1269
AhdI GACNNNNNGTC 1 cut(s) 592
AhlI ACTAGT 1 cut(s) 800
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 3 cut(s) 559, 581, 1415
AjuI GAANNNNNNNTTGG 4 cut(s) 1055, 1087, 1109, 1141
AluBI AGCT 4 cut(s) 94, 882, 920, 981
AluI AGCT 4 cut(s) 94, 882, 920, 981
Alw21I GWGCWC 2 cut(s) 673, 963
Alw26I GTCTC 4 cut(s) 238, 707, 874, 898
AlwI GGATC 5 cut(s) 572, 733, 989, 1378, 1413
AlwNI CAGNNNCTG 1 cut(s) 835
AoxI GGCC 5 cut(s) 58, 241, 288, 404, 965
ApeKI GCWGC 1 cut(s) 1000
ApoI RAATTY 1 cut(s) 1117
AseI ATTAAT 1 cut(s) 1227
AspLEI GCGC 3 cut(s) 316, 697, 1078
AspS9I GGNCC 2 cut(s) 758, 810
AsuC2I CCSGG 4 cut(s) 208, 408, 1034, 1082
AsuHPI GGTGA 2 cut(s) 109, 1177
AvaII GGWCC 2 cut(s) 758, 810
BaeGI GKGCMC 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 705, 738
BbrPI CACGTG 2 cut(s) 200, 304
BbsI GAAGAC 1 cut(s) 1346
Bbv12I GWGCWC 2 cut(s) 673, 963
BbvI GCAGC 1 cut(s) 987
BccI CCATC 5 cut(s) 41, 79, 233, 725, 1282
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 3 cut(s) 561, 583, 1417
BclI TGATCA 1 cut(s) 1177
BcnI CCSGG 4 cut(s) 208, 408, 1034, 1082
BcoDI GTCTC 4 cut(s) 238, 707, 874, 898
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 1 cut(s) 801
BfmI CTRYAG 2 cut(s) 823, 1086
BisI GCNGC 4 cut(s) 106, 192, 195, 1001
BlsI GCNGC 4 cut(s) 107, 193, 196, 1002
Bme1390I CCNGG 7 cut(s) 208, 408, 561, 583, 1034, 1082, 1417
Bme18I GGWCC 2 cut(s) 758, 810
BmeRI GACNNNNNGTC 1 cut(s) 592
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 758, 810
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 7 cut(s) 208, 408, 561, 583, 1034, 1082, 1417
BmsI GCATC 3 cut(s) 107, 147, 1342
BoxI GACNNNNGTC 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 1346
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 1 cut(s) 582
BpuMI CCSGG 4 cut(s) 208, 408, 1034, 1082
BsaAI YACGTR 2 cut(s) 200, 304
BsaI GGTCTC 2 cut(s) 238, 707
BsaJI CCNNGG 8 cut(s) 55, 228, 351, 581, 582, 730, 1049, 1329
BsaXI ACNNNNNCTCC 4 cut(s) 496, 526, 1246, 1276
Bsc4I CCNNNNNNNGG 8 cut(s) 56, 286, 731, 1088, 1110, 1288, 1335, 1422
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 2 cut(s) 133, 856
BseBI CCWGG 3 cut(s) 561, 583, 1417
BseDI CCNNGG 8 cut(s) 55, 228, 351, 581, 582, 730, 1049, 1329
BseGI GGATG 4 cut(s) 39, 138, 1297, 1312
BseLI CCNNNNNNNGG 8 cut(s) 56, 286, 731, 1088, 1110, 1288, 1335, 1422
BseMI GCAATG 2 cut(s) 133, 856
BseMII CTCAG 3 cut(s) 870, 949, 1368
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 681
BseSI GKGCMC 1 cut(s) 213
BseX3I CGGCCG 1 cut(s) 965
BseXI GCAGC 1 cut(s) 987
Bsh1236I CGCG 2 cut(s) 105, 314
Bsh1285I CGRYCG 2 cut(s) 968, 1240
BshFI GGCC 5 cut(s) 60, 243, 290, 406, 967
BsiEI CGRYCG 2 cut(s) 968, 1240
BsiHKAI GWGCWC 2 cut(s) 673, 963
BsiSI CCGG 6 cut(s) 207, 407, 964, 968, 1033, 1082
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 8 cut(s) 56, 286, 731, 1088, 1110, 1288, 1335, 1422
BsmAI GTCTC 4 cut(s) 238, 707, 874, 898
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 5 cut(s) 60, 243, 290, 406, 967
Bso31I GGTCTC 2 cut(s) 238, 707
Bsp1286I GDGCHC 3 cut(s) 213, 673, 963
Bsp19I CCATGG 1 cut(s) 730
BspACI CCGC 9 cut(s) 105, 192, 195, 262, 312, 535, 998, 1021, 1322
BspANI GGCC 5 cut(s) 60, 243, 290, 406, 967
BspCNI CTCAG 3 cut(s) 869, 948, 1369
BspFNI CGCG 2 cut(s) 105, 314
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 459
BspMAI CTGCAG 1 cut(s) 827
BspPI GGATC 5 cut(s) 572, 733, 989, 1378, 1413
BspTNI GGTCTC 2 cut(s) 238, 707
BsrBI CCGCTC 2 cut(s) 264, 1021
BsrDI GCAATG 2 cut(s) 133, 856
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 8 cut(s) 55, 228, 351, 581, 582, 730, 1049, 1329
BssT1I CCWWGG 3 cut(s) 55, 730, 1329
Bst2UI CCWGG 3 cut(s) 561, 583, 1417
Bst4CI ACNGT 3 cut(s) 232, 364, 625
BstBAI YACGTR 2 cut(s) 200, 304
BstC8I GCNNGC 3 cut(s) 96, 358, 462
BstDEI CTNAG 4 cut(s) 420, 856, 935, 1377
BstDSI CCRYGG 3 cut(s) 228, 730, 1049
BstENI CCTNNNNNAGG 1 cut(s) 54
BstF5I GGATG 4 cut(s) 39, 138, 1297, 1312
BstFNI CGCG 2 cut(s) 105, 314
BstHHI GCGC 3 cut(s) 316, 697, 1078
BstMAI GTCTC 4 cut(s) 238, 707, 874, 898
BstMCI CGRYCG 2 cut(s) 968, 1240
BstMWI GCNNNNNNNGC 2 cut(s) 203, 1082
BstNI CCWGG 3 cut(s) 561, 583, 1417
BstNSI RCATGY 2 cut(s) 525, 893
BstPAI GACNNNNGTC 1 cut(s) 825
BstSCI CCNGG 7 cut(s) 206, 406, 559, 581, 1032, 1080, 1415
BstSFI CTRYAG 2 cut(s) 823, 1086
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 2 cut(s) 105, 314
BstV1I GCAGC 1 cut(s) 987
BstV2I GAAGAC 1 cut(s) 1346
BstX2I RGATCY 3 cut(s) 738, 994, 1405
BstYI RGATCY 3 cut(s) 738, 994, 1405
BstZI CGGCCG 1 cut(s) 965
BsuRI GGCC 5 cut(s) 60, 243, 290, 406, 967
BtgI CCRYGG 3 cut(s) 228, 730, 1049
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 4 cut(s) 39, 138, 1297, 1312
BtsIMutI CAGTG 1 cut(s) 836
Cac8I GCNNGC 3 cut(s) 96, 358, 462
CaiI CAGNNNCTG 1 cut(s) 835
CciI TCATGA 1 cut(s) 526
CfoI GCGC 3 cut(s) 316, 697, 1078
Cfr13I GGNCC 2 cut(s) 758, 810
Csp6I GTAC 3 cut(s) 365, 722, 1148
CviAII CATG 8 cut(s) 62, 286, 522, 527, 589, 731, 790, 890
CviQI GTAC 3 cut(s) 365, 722, 1148
DdeI CTNAG 4 cut(s) 420, 856, 935, 1377
DraI TTTAAA 1 cut(s) 1015
DriI GACNNNNNGTC 1 cut(s) 592
EaeI YGGCCR 2 cut(s) 404, 965
EagI CGGCCG 1 cut(s) 965
Eam1105I GACNNNNNGTC 1 cut(s) 592
EclXI CGGCCG 1 cut(s) 965
Eco130I CCWWGG 3 cut(s) 55, 730, 1329
Eco31I GGTCTC 2 cut(s) 238, 707
Eco47I GGWCC 2 cut(s) 758, 810
Eco52I CGGCCG 1 cut(s) 965
Eco72I CACGTG 2 cut(s) 200, 304
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 1117
EcoRII CCWGG 3 cut(s) 559, 581, 1415
EcoT14I CCWWGG 3 cut(s) 55, 730, 1329
EcoT22I ATGCAT 1 cut(s) 1357
ErhI CCWWGG 3 cut(s) 55, 730, 1329
FaeI CATG 8 cut(s) 65, 289, 525, 530, 592, 734, 793, 893
FalI AAGNNNNNCTT 6 cut(s) 104, 136, 728, 760, 1055, 1087
FaqI GGGAC 1 cut(s) 599
FatI CATG 8 cut(s) 61, 285, 521, 526, 588, 730, 789, 889
FauI CCCGC 1 cut(s) 528
FbaI TGATCA 1 cut(s) 1177
Fnu4HI GCNGC 4 cut(s) 106, 192, 195, 1001
FokI GGATG 4 cut(s) 26, 125, 1304, 1319
Fsp4HI GCNGC 4 cut(s) 106, 192, 195, 1001
FspBI CTAG 1 cut(s) 801
GlaI GCGC 3 cut(s) 315, 696, 1077
GluI GCNGC 4 cut(s) 106, 192, 195, 1001
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 5 cut(s) 60, 243, 290, 406, 967
HapII CCGG 6 cut(s) 207, 407, 964, 968, 1033, 1082
HhaI GCGC 3 cut(s) 316, 697, 1078
Hin1II CATG 8 cut(s) 65, 289, 525, 530, 592, 734, 793, 893
Hin6I GCGC 3 cut(s) 314, 695, 1076
HinP1I GCGC 3 cut(s) 314, 695, 1076
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 4 cut(s) 8, 707, 815, 1420
HpaII CCGG 6 cut(s) 207, 407, 964, 968, 1033, 1082
HphI GGTGA 2 cut(s) 109, 1177
Hpy166II GTNNAC 3 cut(s) 127, 946, 1148
Hpy188III TCNNGA 6 cut(s) 112, 334, 527, 605, 1252, 1315
Hpy8I GTNNAC 3 cut(s) 127, 946, 1148
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 4 cut(s) 130, 661, 754, 1210
HpyCH4III ACNGT 3 cut(s) 232, 364, 625
HpyCH4IV ACGT 5 cut(s) 199, 303, 318, 489, 660
HpyCH4V TGCA 8 cut(s) 138, 301, 521, 687, 752, 825, 887, 1355
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 1082
HpyF3I CTNAG 4 cut(s) 420, 856, 935, 1377
HpySE526I ACGT 5 cut(s) 199, 303, 318, 489, 660
Hsp92II CATG 8 cut(s) 65, 289, 525, 530, 592, 734, 793, 893
HspAI GCGC 3 cut(s) 314, 695, 1076
Ksp22I TGATCA 1 cut(s) 1177
LmnI GCTCC 4 cut(s) 269, 457, 668, 966
Lsp1109I GCAGC 1 cut(s) 987
LweI GCATC 3 cut(s) 107, 147, 1342
MaeI CTAG 1 cut(s) 801
MaeII ACGT 5 cut(s) 199, 303, 318, 489, 660
MaeIII GTNAC 3 cut(s) 370, 902, 1028
MbiI CCGCTC 2 cut(s) 264, 1021
MboII GAAGA 7 cut(s) 28, 388, 488, 491, 593, 1351, 1361
MfeI CAATTG 2 cut(s) 573, 753
MflI RGATCY 3 cut(s) 738, 994, 1405
MhlI GDGCHC 3 cut(s) 213, 673, 963
MluCI AATT 6 cut(s) 66, 573, 753, 1117, 1181, 1228
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 1 cut(s) 798
Mph1103I ATGCAT 1 cut(s) 1357
MseI TTAA 2 cut(s) 1014, 1227
MslI CAYNNNNRTG 2 cut(s) 321, 1156
MspA1I CMGCKG 1 cut(s) 1000
MspI CCGG 6 cut(s) 207, 407, 964, 968, 1033, 1082
MspR9I CCNGG 7 cut(s) 208, 408, 561, 583, 1034, 1082, 1417
MunI CAATTG 2 cut(s) 573, 753
MvaI CCWGG 3 cut(s) 561, 583, 1417
MvnI CGCG 2 cut(s) 105, 314
MwoI GCNNNNNNNGC 2 cut(s) 203, 1082
NciI CCSGG 4 cut(s) 208, 408, 1034, 1082
NcoI CCATGG 1 cut(s) 730
NlaIII CATG 8 cut(s) 65, 289, 525, 530, 592, 734, 793, 893
NlaIV GGNNCC 1 cut(s) 459
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 2 cut(s) 902, 1028
NsiI ATGCAT 1 cut(s) 1357
NspI RCATGY 2 cut(s) 525, 893
PagI TCATGA 1 cut(s) 526
PasI CCCWGGG 1 cut(s) 582
PciI ACATGT 1 cut(s) 889
PfeI GAWTC 3 cut(s) 8, 707, 1420
PflMI CCANNNNNTGG 2 cut(s) 286, 1288
PkrI GCNGC 4 cut(s) 107, 193, 196, 1002
Ple19I CGATCG 1 cut(s) 1240
PleI GAGTC 1 cut(s) 823
PmaCI CACGTG 2 cut(s) 200, 304
PmlI CACGTG 2 cut(s) 200, 304
PpsI GAGTC 1 cut(s) 823
Ppu21I YACGTR 2 cut(s) 200, 304
PscI ACATGT 1 cut(s) 889
PshAI GACNNNNGTC 1 cut(s) 825
PshBI ATTAAT 1 cut(s) 1227
Psp6I CCWGG 3 cut(s) 559, 581, 1415
PspCI CACGTG 2 cut(s) 200, 304
PspGI CCWGG 3 cut(s) 559, 581, 1415
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 2 cut(s) 758, 810
PstI CTGCAG 1 cut(s) 827
PstNI CAGNNNCTG 1 cut(s) 835
PsuI RGATCY 3 cut(s) 738, 994, 1405
PvuI CGATCG 1 cut(s) 1240
RsaI GTAC 3 cut(s) 366, 723, 1149
RsaNI GTAC 3 cut(s) 365, 722, 1148
RseI CAYNNNNRTG 2 cut(s) 321, 1156
SaqAI TTAA 2 cut(s) 1014, 1227
SatI GCNGC 4 cut(s) 106, 192, 195, 1001
Sau96I GGNCC 2 cut(s) 758, 810
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 7 cut(s) 208, 408, 561, 583, 1034, 1082, 1417
SduI GDGCHC 3 cut(s) 213, 673, 963
SfaNI GCATC 3 cut(s) 107, 147, 1342
SfcI CTRYAG 2 cut(s) 823, 1086
SinI GGWCC 2 cut(s) 758, 810
SmiMI CAYNNNNRTG 2 cut(s) 321, 1156
SpeI ACTAGT 1 cut(s) 800
Sse9I AATT 6 cut(s) 66, 573, 753, 1117, 1181, 1228
SsiI CCGC 9 cut(s) 105, 192, 195, 262, 312, 535, 998, 1021, 1322
SspMI CTAG 1 cut(s) 801
StyD4I CCNGG 7 cut(s) 206, 406, 559, 581, 1032, 1080, 1415
StyI CCWWGG 3 cut(s) 55, 730, 1329
TaaI ACNGT 3 cut(s) 232, 364, 625
TaiI ACGT 5 cut(s) 202, 306, 321, 492, 663
TaqI TCGA 4 cut(s) 78, 155, 321, 705
TaqII GACCGA 1 cut(s) 1057
TasI AATT 6 cut(s) 66, 573, 753, 1117, 1181, 1228
TauI GCSGC 3 cut(s) 108, 194, 197
TfiI GAWTC 3 cut(s) 8, 707, 1420
Tru1I TTAA 2 cut(s) 1014, 1227
Tru9I TTAA 2 cut(s) 1014, 1227
TscAI CASTG 1 cut(s) 836
TseFI GTSAC 2 cut(s) 902, 1028
TseI GCWGC 1 cut(s) 1000
Tsp45I GTSAC 2 cut(s) 902, 1028
TspDTI ATGAA 4 cut(s) 28, 274, 339, 1387
TspGWI ACGGA 2 cut(s) 470, 1038
TspRI CASTG 1 cut(s) 836
Van91I CCANNNNNTGG 2 cut(s) 286, 1288
VpaK11BI GGWCC 2 cut(s) 758, 810
VspI ATTAAT 1 cut(s) 1227
XagI CCTNNNNNAGG 1 cut(s) 54
XapI RAATTY 1 cut(s) 1117
XceI RCATGY 2 cut(s) 525, 893
XspI CTAG 1 cut(s) 801
Zsp2I ATGCAT 1 cut(s) 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.