MD03G1126200.v1.1

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015810
Physical Location & Seq
Reverse (-)
11910872 .. 11911831
960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1126200.v1.1.491

Sequence Viewer

Length: 648 bp
ATGTTGAAGCACTTTTGGGTTTCTAATGAGTTATTATGTGTTATGTTATTGAGTGACCAGTTCATGGCTTCTTTGTTGCATGTGTTTTCGGCCCACGTAGATGAGGTGGTGGGAAAGGTTGTGAAGTCTTCGGCTGACACCACACCGGTCACTTGTATAATTGCTGACACGTTTTTCGTGTGGCCCTTGAAGATTGCCAAGAAGTTTGGGATTATTTACGTTTCATTTTGGACAGAAACTGCTTTGGCTTTTTCATTGTGTTATCATCTTGATCTTCTTCAAATGCATGGCCATTTTGCATGTCAGGATGTGCGAGAGGACACCATAGATTACATACCAGGAGTGCGAGCAATCGACCCCAAAGACATGATGTCATATCTTCAGGACGCTGATACAACATCTGTGTGCCACCAAATCATATTCAATGCCTTCAAGGACGCCAGAGGTGCACATTTTCACCTGTGCAACACAGTGCAGGAGATTGAGTCAGAGACCATATTAGCCCTGCAAGCCAAGATGAAGTTCTATGCCATTGGACCCATTTTTACAACCACATTCAGCAAGAACATTGCGGCTACGAGCCTGTGGTCCGAATCAGACTGCACCCAGTGGCTCAACACCAAGCCCCATGGCTCGGTTAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

216

Amino Acids

24.26

Weight (kDa)

5.74

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015810)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28080
fragaria_vesca FvH4_3g31170
malus_domestica MD03G1125900.v1.1 MD03G1126200.v1.1
prunus_persica Prupe.6G108000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0057811
rosa_laevigata RLG00000035179
rosa_multiflora Rmu_sc0010457.1_g000003
rosa_roxburghii Rroxscaffold_1G00022690
rosa_rugosa Rorug05G0309700
rosa_samantha Rh5AG378000 Rh5BG389100 Rh5CG413400 Rh5DG404000
rosa_wichuraiana Rw5G035650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 64
AciI CCGC 1 cut(s) 572
AcoI YGGCCR 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 438
AdeI CACNNNGTG 1 cut(s) 609
AfiI CCNNNNNNNGG 2 cut(s) 64, 634
AflIII ACRYGT 1 cut(s) 168
AgeI ACCGGT 1 cut(s) 145
AgsI TTSAA 5 cut(s) 7, 190, 281, 424, 433
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 485
Alw44I GTGCAC 1 cut(s) 447
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 3 cut(s) 90, 182, 289
ApaLI GTGCAC 1 cut(s) 447
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AsiGI ACCGGT 1 cut(s) 145
AspS9I GGNCC 4 cut(s) 91, 183, 536, 588
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 2 cut(s) 536, 588
BaeGI GKGCMC 1 cut(s) 451
BalI TGGCCA 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 485
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 2 cut(s) 536, 588
BmeRI GACNNNNNGTC 1 cut(s) 370
BmgT120I GGNCC 4 cut(s) 91, 183, 536, 588
BmiI GGNNCC 1 cut(s) 538
BmrFI CCNGG 1 cut(s) 339
BmrI ACTGGG 1 cut(s) 601
BmuI ACTGGG 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 628
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 634
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 58, 607
Bse3DI GCAATG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 628
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 64, 634
BseMI GCAATG 1 cut(s) 567
BseNI ACTGG 2 cut(s) 58, 607
BseSI GKGCMC 1 cut(s) 451
BsgI GTGCAG 2 cut(s) 494, 586
BshFI GGCC 3 cut(s) 92, 184, 291
BshTI ACCGGT 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 451
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 64, 634
BsmAI GTCTC 1 cut(s) 485
BsnI GGCC 3 cut(s) 92, 184, 291
Bso31I GGTCTC 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 1 cut(s) 572
BspANI GGCC 3 cut(s) 92, 184, 291
BspLI GGNNCC 1 cut(s) 538
BspTNI GGTCTC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 2 cut(s) 58, 607
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 628
BssMI GATC 1 cut(s) 271
BssNI GRCGYC 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 472
BstACI GRCGYC 1 cut(s) 438
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 348, 510
BstDSI CCRYGG 1 cut(s) 628
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 446, 509
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 2 cut(s) 83, 303
BstSCI CCNGG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 120
BsuRI GGCC 3 cut(s) 92, 184, 291
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 477, 614
Cac8I GCNNGC 2 cut(s) 348, 510
CaiI CAGNNNCTG 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 4 cut(s) 91, 183, 536, 588
CseI GACGC 2 cut(s) 395, 446
CspAI ACCGGT 1 cut(s) 145
CviAII CATG 6 cut(s) 64, 80, 287, 300, 367, 629
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
DraIII CACNNNGTG 1 cut(s) 609
DriI GACNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 289
Eam1105I GACNNNNNGTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 628
Eco31I GGTCTC 1 cut(s) 485
Eco47I GGWCC 2 cut(s) 536, 588
Eco57I CTGAAG 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 628
EcoT22I ATGCAT 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 6 cut(s) 67, 83, 290, 303, 370, 632
FatI CATG 6 cut(s) 63, 79, 286, 299, 366, 628
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 573
GluI GCNGC 1 cut(s) 573
HaeIII GGCC 3 cut(s) 92, 184, 291
HapII CCGG 1 cut(s) 146
HgaI GACGC 2 cut(s) 395, 446
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 6 cut(s) 67, 83, 290, 303, 370, 632
HinfI GANTC 2 cut(s) 485, 593
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 3 cut(s) 490, 592, 598
Hpy188III TCNNGA 3 cut(s) 269, 305, 383
Hpy8I GTNNAC 1 cut(s) 449
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 3 cut(s) 96, 170, 219
HpyCH4V TGCA 8 cut(s) 79, 286, 299, 449, 465, 475, 508, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 509
HpySE526I ACGT 3 cut(s) 96, 170, 219
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 6 cut(s) 67, 83, 290, 303, 370, 632
Kzo9I GATC 1 cut(s) 271
MaeII ACGT 3 cut(s) 96, 170, 219
MaeIII GTNAC 2 cut(s) 53, 148
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 5 cut(s) 120, 202, 266, 269, 371
MhlI GDGCHC 1 cut(s) 451
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 1 cut(s) 159
MluNI TGGCCA 1 cut(s) 291
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 3 cut(s) 97, 310, 437
Mox20I TGGCCA 1 cut(s) 291
Mph1103I ATGCAT 1 cut(s) 288
MscI TGGCCA 1 cut(s) 291
MseI TTAA 2 cut(s) 639, 646
MslI CAYNNNNRTG 2 cut(s) 99, 403
Msp20I TGGCCA 1 cut(s) 291
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 446, 509
NcoI CCATGG 1 cut(s) 628
NdeII GATC 1 cut(s) 271
NlaIII CATG 6 cut(s) 67, 83, 290, 303, 370, 632
NlaIV GGNNCC 1 cut(s) 538
NmuCI GTSAC 2 cut(s) 53, 148
NsiI ATGCAT 1 cut(s) 288
NspI RCATGY 2 cut(s) 83, 303
PfeI GAWTC 1 cut(s) 593
PflMI CCANNNNNTGG 1 cut(s) 64
PinAI ACCGGT 1 cut(s) 145
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Ppu21I YACGTR 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 538
PspPI GGNCC 4 cut(s) 91, 183, 536, 588
PstNI CAGNNNCTG 1 cut(s) 239
RseI CAYNNNNRTG 2 cut(s) 99, 403
SaqAI TTAA 2 cut(s) 639, 646
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 4 cut(s) 91, 183, 536, 588
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 451
SetI ASST 7 cut(s) 99, 108, 120, 173, 222, 448, 462
SinI GGWCC 2 cut(s) 536, 588
SmiMI CAYNNNNRTG 2 cut(s) 99, 403
Sse9I AATT 1 cut(s) 159
SsiI CCGC 1 cut(s) 572
SspI AATATT 1 cut(s) 643
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 3 cut(s) 99, 173, 222
TaqI TCGA 1 cut(s) 354
TasI AATT 1 cut(s) 159
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 2 cut(s) 639, 646
Tru9I TTAA 2 cut(s) 639, 646
TscAI CASTG 2 cut(s) 477, 614
TseFI GTSAC 2 cut(s) 53, 148
Tsp45I GTSAC 2 cut(s) 53, 148
TspDTI ATGAA 4 cut(s) 52, 213, 243, 533
TspRI CASTG 2 cut(s) 477, 614
Van91I CCANNNNNTGG 1 cut(s) 64
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 2 cut(s) 536, 588
XceI RCATGY 2 cut(s) 83, 303
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.