Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014433

Physical Location & Seq

Genomic Coordinates Reverse (-)

16192325 .. 16194172

Gene Structure 1848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAATTCAGGAGGTGGAATCGTTGCTGCAGCAGCTCCTTCAAGCGGCGGTGGTAATGTTGAATGGCATGTCCGACCACCGAACCCTAAAAACCCAGTTGTCTTCTTCGACGTCTCTATTGGTGGTATCCCCGCCGGTCGTATCAAGATGGAGCTCTTCGCCGACATTGCTCCCAAAACCGCTGAAAACTTCAGGCAGTTCTGTACTGGTGAACTCAGAAAAGCTGGAAAGCCGCTTGGTTACAAAGAATGTCAGTTTCACAGAGTCATCAAAGATTTTATGGTTCAAAGTGGTGATTTTCTTAAGAATGATGGTAGTGGATGCATGTCAATCTACGGCCACAAGTTTGAGGATGAGAATTTTACTGCTAAACATACTGGACCAGGATTGCTCTCCATGGCAAATAGTGGGCCAAACACAAATGGGTGCCAGTTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGAGAGTGCTTGGAGATGGTTTGTTGGTTATGCGGAAGATTGAGAACGTGGCTATTGGACCCAATAACCGGCCTAAACTTGCGGTTGTAATTACTGAGTGTGGGGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006139 GO:0006396 GO:0006397 GO:0006457 GO:0006464 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016018 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0033218 GO:0034641 GO:0036211 GO:0042277 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045069 GO:0045070 GO:0046483 GO:0046540 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0065003 GO:0065007 GO:0070013 GO:0071001 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140096 GO:1901360 GO:1901564 GO:1903900 GO:1903902 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

199

Amino Acids

21.49

Weight (kDa)

8.47

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	36 - 197	8.9e-48	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38730
fragaria_vesca	FvH4_7g03600 FvH4_7g03600
malus_domestica	MD02G1278600.v1.1 MD07G1046700.v1.1
prunus_persica	Prupe.2G041900_v2.0.a1
pyrus_communis	pycom02g23890 pycom07g03370
rosa_chinensis	RchiOBHm_Chr1g0326221
rosa_laevigata	RLG00000030082
rosa_multiflora	Rmu_sc0000028.1_g000002 Rmu_sc0004192.1_g000028
rosa_roxburghii	Rroxscaffold_4G00323940
rosa_rugosa	Rorug01G0057800
rosa_samantha	Rh1AG074700 Rh1BG060200
rosa_wichuraiana	Rw1G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	426
AciI	CCGC	7 cut(s)	45, 48, 132, 180, 233, 520, 569
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	4, 358
AcuI	CTGAAG	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	2 cut(s)	44, 555
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	42, 62, 287
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	3 cut(s)	35, 154, 224
AluI	AGCT	3 cut(s)	35, 154, 224
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	118
AoxI	GGCC	3 cut(s)	337, 410, 557
ApeKI	GCWGC	3 cut(s)	26, 29, 32
ApoI	RAATTY	2 cut(s)	4, 358
AspS9I	GGNCC	3 cut(s)	380, 410, 545
AsuHPI	GGTGA	2 cut(s)	221, 305
AvaII	GGWCC	2 cut(s)	380, 545
BanI	GGYRCC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	13, 41, 44
BccI	CCATC	3 cut(s)	142, 305, 497
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	27
BfrI	CTTAAG	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	137
BisI	GCNGC	5 cut(s)	27, 30, 33, 46, 233
BlsI	GCNGC	5 cut(s)	28, 31, 34, 47, 234
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	2 cut(s)	380, 545
BmgT120I	GGNCC	3 cut(s)	380, 410, 545
BmiI	GGNNCC	2 cut(s)	428, 547
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 555
Bse118I	RCCGGY	2 cut(s)	134, 555
Bse1I	ACTGG	4 cut(s)	95, 211, 382, 430
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	326, 358
BseLI	CCNNNNNNNGG	2 cut(s)	44, 555
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	229, 573
BseNI	ACTGG	4 cut(s)	95, 211, 382, 430
BseXI	GCAGC	3 cut(s)	13, 41, 44
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	339, 412, 559
BshNI	GGYRCC	1 cut(s)	426
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	135, 556
BslI	CCNNNNNNNGG	2 cut(s)	44, 555
BsmAI	GTCTC	1 cut(s)	118
BsmBI	CGTCTC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	339, 412, 559
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	7 cut(s)	45, 48, 132, 180, 233, 520, 569
BspANI	GGCC	3 cut(s)	339, 412, 559
BspCNI	CTCAG	2 cut(s)	228, 574
BspLI	GGNNCC	2 cut(s)	428, 547
BspMAI	CTGCAG	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	426
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	2 cut(s)	134, 555
BsrI	ACTGG	4 cut(s)	95, 211, 382, 430
BssAI	RCCGGY	2 cut(s)	134, 555
BssECI	CCNNGG	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	215, 582
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	326, 358
BstMAI	GTCTC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 167
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	3 cut(s)	71, 328, 479
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	13, 41, 44
BstV2I	GAAGAC	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	339, 412, 559
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	326, 358
Cfr10I	RCCGGY	2 cut(s)	134, 555
Cfr13I	GGNCC	3 cut(s)	380, 410, 545
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	4 cut(s)	68, 325, 397, 476
CviJI	RGCY	9 cut(s)	35, 154, 224, 232, 339, 412, 463, 539, 559
CviKI_1	RGCY	9 cut(s)	35, 154, 224, 232, 339, 412, 463, 539, 559
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	2 cut(s)	215, 582
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	380, 545
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	4 cut(s)	71, 328, 400, 479
FaiI	YATR	7 cut(s)	69, 281, 326, 375, 398, 477, 518
FatI	CATG	4 cut(s)	67, 324, 396, 475
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	5 cut(s)	27, 30, 33, 46, 233
FokI	GGATG	2 cut(s)	333, 365
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	5 cut(s)	27, 30, 33, 46, 233
GluI	GCNGC	5 cut(s)	27, 30, 33, 46, 233
HaeIII	GGCC	3 cut(s)	339, 412, 559
HapII	CCGG	2 cut(s)	135, 556
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	71, 328, 400, 479
HinfI	GANTC	2 cut(s)	18, 264
HpaII	CCGG	2 cut(s)	135, 556
HphI	GGTGA	2 cut(s)	221, 305
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	2 cut(s)	74, 218
Hpy188III	TCNNGA	2 cut(s)	9, 145
Hpy8I	GTNNAC	1 cut(s)	212
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	48
HpyCH4IV	ACGT	2 cut(s)	111, 534
HpyCH4V	TGCA	3 cut(s)	29, 324, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 167
HpyF3I	CTNAG	2 cut(s)	215, 582
HpySE526I	ACGT	2 cut(s)	111, 534
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	71, 328, 400, 479
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	3 cut(s)	40, 151, 175
Lsp1109I	GCAGC	3 cut(s)	13, 41, 44
LweI	GCATC	1 cut(s)	311
MaeII	ACGT	2 cut(s)	111, 534
MaeIII	GTNAC	1 cut(s)	239
MboII	GAAGA	5 cut(s)	94, 97, 148, 427, 535
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	4, 358, 576
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	2 cut(s)	5, 343
Mph1103I	ATGCAT	1 cut(s)	326
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	182
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	2 cut(s)	135, 556
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	32, 167
NcoI	CCATGG	1 cut(s)	396
NlaIII	CATG	4 cut(s)	71, 328, 400, 479
NlaIV	GGNNCC	2 cut(s)	428, 547
NsiI	ATGCAT	1 cut(s)	326
NspI	RCATGY	3 cut(s)	71, 328, 479
PciSI	GCTCTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	5 cut(s)	28, 31, 34, 47, 234
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	428, 547
PspPI	GGNCC	3 cut(s)	380, 410, 545
PstI	CTGCAG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	5 cut(s)	27, 30, 33, 46, 233
Sau96I	GGNCC	3 cut(s)	380, 410, 545
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	6 cut(s)	16, 37, 114, 156, 226, 537
SfaNI	GCATC	1 cut(s)	311
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	2 cut(s)	380, 545
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	4, 358, 576
SsiI	CCGC	7 cut(s)	45, 48, 132, 180, 233, 520, 569
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	396
TaiI	ACGT	2 cut(s)	114, 537
TaqI	TCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	4, 358, 576
TatI	WGTACW	1 cut(s)	203
TauI	GCSGC	2 cut(s)	48, 235
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	3 cut(s)	26, 29, 32
TspDTI	ATGAA	2 cut(s)	17, 427
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	380, 545
XapI	RAATTY	2 cut(s)	4, 358
XceI	RCATGY	3 cut(s)	71, 328, 479
ZraI	GACGTC	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.