Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014433

Physical Location & Seq

Genomic Coordinates Forward (+)

3970326 .. 3973146

Gene Structure 2821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCGGCATCAGGCGGAGGAGGAGGAGGCGTGGAGTGGCACGTGCGTCCCCCTAACCCCAAGAACCCAGTCGTCTTCTTCGACATCACCATCGGTACCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAAACCGCCGAAAACTTCAGGCAACTCTGCACCGGCGAGTACAGAAAAGCTGGATTGCCAGTTGGATTCAAGGGGTGCCAGTTCCACAGGGTCATTAAGGATTTCATGATTCAAGCTGGGGATTTTCTTAAGGGTGATGGCAGCGGATGTGTTTCCATTTACGGACATAAGTTTGATGATGAGAATTTCGATGCCAAACACACTGGTCCTGGACTCTTGTCAATGGCAAATAGTGGACCAAATACCAATGGGTGCCAGTTCTTTATAACTTGCGCAAAATGTGACTGGCTTGACAATAAGCATGTTGTTTTTGGGAGAGTACTTGGAGATGGACTTTTGGTTGTTAGGAAGATTGAGAATGTCGCTACAGGACCCAATAATCGCCCTAAACTAGCATGTGTTATTTCTGAATGTGGGGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006139 GO:0006396 GO:0006397 GO:0006457 GO:0006464 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016018 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0033218 GO:0034641 GO:0036211 GO:0042277 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045069 GO:0045070 GO:0046483 GO:0046540 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0065003 GO:0065007 GO:0070013 GO:0071001 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140096 GO:1901360 GO:1901564 GO:1903900 GO:1903902 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

191

Amino Acids

20.49

Weight (kDa)

8.11

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	27 - 191	1.6e-44	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38730
fragaria_vesca	FvH4_7g03600 FvH4_7g03600
malus_domestica	MD02G1278600.v1.1 MD07G1046700.v1.1
prunus_persica	Prupe.2G041900_v2.0.a1
pyrus_communis	pycom02g23890 pycom07g03370
rosa_chinensis	RchiOBHm_Chr1g0326221
rosa_laevigata	RLG00000030082
rosa_multiflora	Rmu_sc0000028.1_g000002 Rmu_sc0004192.1_g000028
rosa_roxburghii	Rroxscaffold_4G00323940
rosa_rugosa	Rorug01G0057800
rosa_samantha	Rh1AG074700 Rh1BG060200
rosa_wichuraiana	Rw1G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
Acc16I	TGCGCA	1 cut(s)	421
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	3 cut(s)	95, 222, 399
AciI	CCGC	6 cut(s)	5, 15, 105, 112, 153, 291
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	148
AcvI	CACGTG	1 cut(s)	43
AfaI	GTAC	3 cut(s)	97, 188, 468
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	217, 260
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	127, 197, 263
AluI	AGCT	3 cut(s)	127, 197, 263
Alw21I	GWGCWC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	331
Asp718I	GGTACC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	353, 383, 518
AsuHPI	GGTGA	2 cut(s)	79, 293
AvaII	GGWCC	3 cut(s)	353, 383, 518
BanI	GGYRCC	3 cut(s)	95, 222, 399
BanII	GRGCYC	1 cut(s)	129
BbrPI	CACGTG	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	5 cut(s)	98, 107, 115, 278, 470
BciT130I	CCWGG	1 cut(s)	357
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	1 cut(s)	513
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	3 cut(s)	6, 112, 289
BlsI	GCNGC	3 cut(s)	7, 113, 290
BmcAI	AGTACT	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	3 cut(s)	353, 383, 518
BmgT120I	GGNCC	3 cut(s)	353, 383, 518
BmiI	GGNNCC	4 cut(s)	97, 224, 401, 520
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	17, 123, 328
BmuI	ACTGGG	1 cut(s)	62
BoxI	GACNNNNGTC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse118I	RCCGGY	2 cut(s)	107, 179
Bse1I	ACTGG	6 cut(s)	68, 206, 226, 355, 403, 437
BseBI	CCWGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	99, 299
BseNI	ACTGG	6 cut(s)	68, 206, 226, 355, 403, 437
BseRI	GAGGAG	3 cut(s)	33, 36, 39
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	3 cut(s)	95, 222, 399
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	108, 180
BslFI	GGGAC	2 cut(s)	33, 128
BsmFI	GGGAC	2 cut(s)	33, 128
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	129
BspACI	CCGC	6 cut(s)	5, 15, 105, 112, 153, 291
BspANI	GGCC	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	97, 224, 401, 520
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	3 cut(s)	95, 222, 399
BspTI	CTTAAG	1 cut(s)	275
BsrFI	RCCGGY	2 cut(s)	107, 179
BsrI	ACTGG	6 cut(s)	68, 206, 226, 355, 403, 437
BssAI	RCCGGY	2 cut(s)	107, 179
Bst2UI	CCWGG	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	134
BstAFI	CTTAAG	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	99, 299
BstHHI	GCGC	1 cut(s)	422
BstMCI	CGRYCG	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	2 cut(s)	452, 546
BstPAI	GACNNNNGTC	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	67
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	99, 299
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	2 cut(s)	107, 179
Cfr13I	GGNCC	3 cut(s)	353, 383, 518
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	3 cut(s)	96, 187, 467
CviAII	CATG	3 cut(s)	253, 449, 543
CviJI	RGCY	5 cut(s)	111, 127, 197, 263, 436
CviKI_1	RGCY	5 cut(s)	111, 127, 197, 263, 436
CviQI	GTAC	3 cut(s)	96, 187, 467
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	127
EclXI	CGGCCG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	3 cut(s)	353, 383, 518
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	148
Eco72I	CACGTG	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	3 cut(s)	256, 452, 546
FaiI	YATR	5 cut(s)	254, 315, 413, 450, 544
FaqI	GGGAC	2 cut(s)	33, 128
FatI	CATG	3 cut(s)	252, 448, 542
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	6, 112, 289
FokI	GGATG	2 cut(s)	86, 306
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	3 cut(s)	6, 112, 289
FspBI	CTAG	1 cut(s)	539
FspI	TGCGCA	1 cut(s)	421
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	3 cut(s)	6, 112, 289
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	108, 180
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	3 cut(s)	256, 452, 546
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	213, 256, 360
HpaII	CCGG	2 cut(s)	108, 180
HphI	GGTGA	2 cut(s)	79, 293
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	2 cut(s)	118, 253
Hpy8I	GTNNAC	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	256, 452, 546
HspAI	GCGC	1 cut(s)	420
KpnI	GGTACC	1 cut(s)	99
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	3 cut(s)	17, 123, 328
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	428
MboII	GAAGA	4 cut(s)	67, 70, 121, 508
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	1 cut(s)	331
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	4 cut(s)	11, 14, 17, 20
MroNI	GCCGGC	1 cut(s)	107
MseI	TTAA	2 cut(s)	243, 276
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	291
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	2 cut(s)	108, 180
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
NaeI	GCCGGC	1 cut(s)	109
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	3 cut(s)	256, 452, 546
NlaIV	GGNNCC	4 cut(s)	97, 224, 401, 520
NmuCI	GTSAC	1 cut(s)	428
NsbI	TGCGCA	1 cut(s)	421
NspI	RCATGY	2 cut(s)	452, 546
PagI	TCATGA	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 138
PdiI	GCCGGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	213, 256
PflFI	GACNNNGTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	7, 113, 290
PleI	GAGTC	1 cut(s)	354
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	354
Ppu21I	YACGTR	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	518
PshAI	GACNNNNGTC	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	355
PspCI	CACGTG	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	97, 224, 401, 520
PspPI	GGNCC	3 cut(s)	353, 383, 518
PspPPI	RGGWCCY	1 cut(s)	518
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	3 cut(s)	97, 188, 468
RsaNI	GTAC	3 cut(s)	96, 187, 467
RseI	CAYNNNNRTG	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	243, 276
SatI	GCNGC	3 cut(s)	6, 112, 289
Sau96I	GGNCC	3 cut(s)	353, 383, 518
ScaI	AGTACT	1 cut(s)	468
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	4 cut(s)	45, 129, 199, 265
SfaNI	GCATC	3 cut(s)	17, 123, 328
SfcI	CTRYAG	1 cut(s)	513
SgrAI	CRCCGGYG	1 cut(s)	179
SinI	GGWCC	3 cut(s)	353, 383, 518
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	6 cut(s)	5, 15, 105, 112, 153, 291
SspMI	CTAG	1 cut(s)	539
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	355
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	81, 336
TasI	AATT	1 cut(s)	331
TatI	WGTACW	2 cut(s)	186, 466
TauI	GCSGC	2 cut(s)	8, 114
TfiI	GAWTC	2 cut(s)	213, 256
Tru1I	TTAA	2 cut(s)	243, 276
Tru9I	TTAA	2 cut(s)	243, 276
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	241
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	140
Vha464I	CTTAAG	1 cut(s)	275
VpaK11BI	GGWCC	3 cut(s)	353, 383, 518
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	2 cut(s)	452, 546
XspI	CTAG	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.