Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014433

Physical Location & Seq

Genomic Coordinates Forward (+)

9512847 .. 9516218

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0057800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTGGTGGTGGAATCACTGGGGTGGCTGACAGAGTCGACCATAATGGCAAGAAGCACCGCGCCGTCGCCCACGTCGGAGCCTCTTAGATCATGGAGCTCAAAGCCTAGCTTTACTAGTCTCAAGAAGATTCCAAGAAGTCCAAAGACCTCGCAGACCCAGATGCTGAGTTCCACCTCGCTAAGTAGAAGATCACCTCACACGATGTCTTCTCCGCCAAGAACTCCTGCGTCGACGCTTGGGCTCACAGGAGGAGAACGGAGGCCCCTACAAGGCATCAATTCCATTGATTCAGGCCACAACCCAGAAGCAGATGTTTTACTTGCTTATGAGATGAATGGAGAGGGCTTCTTTATGCAAAAAGACTACAAAATGTTTCCACCTTTAGTAAACTGGGATAACATTAATTGGTCCACCAGGAGGCCACAAATGGATTTTCCTGTCCAGTGTGTAATTTGTTCTTTAGAGGATGTGAATGCTGTAAAGCTTGGAAAGGGGCGGGACATGTATGTTATGTTTTCCGTCGCAAATACTTTTTGCAATGGAAATTTACCTTCGCAAATGGATTTTGTGACGCCACCTATTGCAACGCTGACATTTCCGTCGCAAAAGGCTCAATTTGCCGTCGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006139 GO:0006396 GO:0006397 GO:0006457 GO:0006464 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016018 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0033218 GO:0034641 GO:0036211 GO:0042277 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045069 GO:0045070 GO:0046483 GO:0046540 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0065003 GO:0065007 GO:0070013 GO:0071001 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140096 GO:1901360 GO:1901564 GO:1903900 GO:1903902 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

211

Amino Acids

23.31

Weight (kDa)

9.27

Isoelectric Point (pI)

65.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38730
fragaria_vesca	FvH4_7g03600 FvH4_7g03600
malus_domestica	MD02G1278600.v1.1 MD07G1046700.v1.1
prunus_persica	Prupe.2G041900_v2.0.a1
pyrus_communis	pycom02g23890 pycom07g03370
rosa_chinensis	RchiOBHm_Chr1g0326221
rosa_laevigata	RLG00000030082
rosa_multiflora	Rmu_sc0000028.1_g000002 Rmu_sc0004192.1_g000028
rosa_roxburghii	Rroxscaffold_4G00323940
rosa_rugosa	Rorug01G0057800
rosa_samantha	Rh1AG074700 Rh1BG060200
rosa_wichuraiana	Rw1G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	601
AccI	GTMKAC	2 cut(s)	38, 233
AccII	CGCG	1 cut(s)	62
AciI	CCGC	3 cut(s)	60, 215, 499
AcsI	RAATTY	1 cut(s)	547
AcyI	GRCGYC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	272, 420
AflIII	ACRYGT	1 cut(s)	504
AhlI	ACTAGT	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	416
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	99, 111, 487
AluI	AGCT	3 cut(s)	99, 111, 487
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	3 cut(s)	263, 295, 422
ApoI	RAATTY	1 cut(s)	547
AseI	ATTAAT	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	264, 411
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	411
BanII	GRGCYC	2 cut(s)	101, 246
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	101
BceAI	ACGGC	2 cut(s)	49, 608
BciT130I	CCWGG	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	2 cut(s)	108, 117
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	411
BmgBI	CACGTC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	264, 411
BmiI	GGNNCC	2 cut(s)	81, 266
BmrFI	CCNGG	1 cut(s)	418
BmrI	ACTGGG	2 cut(s)	29, 403
BmsI	GCATC	2 cut(s)	153, 285
BmuI	ACTGGG	2 cut(s)	29, 403
BpiI	GAAGAC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 420
Bse1I	ACTGG	3 cut(s)	24, 398, 445
Bse3DI	GCAATG	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	272, 420
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	3 cut(s)	24, 398, 445
BseRI	GAGGAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	265, 297, 424
BsiHKAI	GWGCWC	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	272, 420
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	3 cut(s)	265, 297, 424
Bsp1286I	GDGCHC	2 cut(s)	101, 246
Bsp143I	GATC	2 cut(s)	89, 191
BspACI	CCGC	3 cut(s)	60, 215, 499
BspANI	GGCC	3 cut(s)	265, 297, 424
BspCNI	CTCAG	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	81, 266
BsrDI	GCAATG	1 cut(s)	547
BsrI	ACTGG	3 cut(s)	24, 398, 445
BssMI	GATC	2 cut(s)	89, 191
BssNI	GRCGYC	1 cut(s)	575
Bst2UI	CCWGG	1 cut(s)	418
BstACI	GRCGYC	1 cut(s)	575
BstDEI	CTNAG	3 cut(s)	86, 167, 182
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	92, 194
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	89, 191
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	1 cut(s)	418
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	201
BsuRI	GGCC	3 cut(s)	265, 297, 424
BtrI	CACGTC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	2 cut(s)	17, 452
CaiI	CAGNNNCTG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	264, 411
CseI	GACGC	3 cut(s)	219, 244, 583
CviAII	CATG	2 cut(s)	93, 505
DdeI	CTNAG	3 cut(s)	86, 167, 182
DpnI	GATC	2 cut(s)	91, 193
DpnII	GATC	2 cut(s)	89, 191
DrdI	GACNNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	601
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	2 cut(s)	101, 246
Eco47I	GGWCC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	416
EcoT38I	GRGCYC	2 cut(s)	101, 246
FaeI	CATG	2 cut(s)	96, 508
FaiI	YATR	7 cut(s)	44, 94, 330, 356, 506, 510, 515
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	2 cut(s)	92, 504
FauI	CCCGC	1 cut(s)	492
FblI	GTMKAC	2 cut(s)	38, 233
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	2 cut(s)	101, 246
FspBI	CTAG	2 cut(s)	108, 117
GlaI	GCGC	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	265, 297, 424
HgaI	GACGC	3 cut(s)	219, 244, 583
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	575
Hin1II	CATG	2 cut(s)	96, 508
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	2 cut(s)	39, 234
HindII	GTYRAC	2 cut(s)	39, 234
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	4 cut(s)	14, 35, 130, 290
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	4 cut(s)	39, 234, 391, 414
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	4 cut(s)	39, 234, 391, 414
Hpy99I	CGWCG	7 cut(s)	70, 79, 235, 238, 527, 607, 629
HpyAV	CCTTC	1 cut(s)	564
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	358, 540, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	3 cut(s)	86, 167, 182
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	575
Hsp92II	CATG	2 cut(s)	96, 508
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	89, 191
LmnI	GCTCC	2 cut(s)	79, 96
LweI	GCATC	2 cut(s)	153, 285
MaeI	CTAG	2 cut(s)	108, 117
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	2 cut(s)	91, 193
MboI	GATC	2 cut(s)	89, 191
MboII	GAAGA	3 cut(s)	139, 201, 201
MhlI	GDGCHC	2 cut(s)	101, 246
MluCI	AATT	5 cut(s)	280, 406, 453, 547, 617
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	9 cut(s)	93, 160, 187, 207, 245, 255, 337, 414, 460
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	418
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeII	GATC	2 cut(s)	89, 191
NlaIII	CATG	2 cut(s)	96, 508
NlaIV	GGNNCC	2 cut(s)	81, 266
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	508
OliI	CACNNNNGTG	1 cut(s)	22
PciI	ACATGT	1 cut(s)	504
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	3 cut(s)	14, 130, 290
PflFI	GACNNNGTC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	504
PshBI	ATTAAT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	81, 266
PspPI	GGNCC	2 cut(s)	264, 411
PstNI	CAGNNNCTG	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	101
SalI	GTCGAC	2 cut(s)	37, 232
SaqAI	TTAA	1 cut(s)	405
Sau3AI	GATC	2 cut(s)	89, 191
Sau96I	GGNCC	2 cut(s)	264, 411
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	2 cut(s)	101, 246
SfaNI	GCATC	2 cut(s)	153, 285
SgrDI	CGTCGACG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	5 cut(s)	280, 406, 453, 547, 617
SsiI	CCGC	3 cut(s)	60, 215, 499
SspMI	CTAG	2 cut(s)	108, 117
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	416
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	38, 233
TasI	AATT	5 cut(s)	280, 406, 453, 547, 617
TfiI	GAWTC	3 cut(s)	14, 130, 290
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	24, 452
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	1 cut(s)	350
TspGWI	ACGGA	3 cut(s)	274, 511, 591
TspRI	CASTG	2 cut(s)	24, 452
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	411
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	1 cut(s)	547
XceI	RCATGY	1 cut(s)	508
XmiI	GTMKAC	2 cut(s)	38, 233
XspI	CTAG	2 cut(s)	108, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.