Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014433

Physical Location & Seq

Genomic Coordinates Forward (+)

3974977 .. 3978052

Gene Structure 3076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1046700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGTCCGGTGGAGGGAACGCAGGGGGAGGAGTGGAGTGGCATCTGCGGCCTCCAAACCCTAAAAACCCAATCGTCTTCTTCGACATCACCATCGGTACCATACCCGCCGGTCGCATCAAGATGGAGCTCTTCGCCGATATTGCCCCTAAAACCGCTGAGAATTTCAGGCAATTCTGCACCGGCGAGTACAGAAAAGCTGGATTGCCAGTTGGTTACAAGGGGTGCCAGTTCCACAGGGTGATTAAGGATTTCATGATTCAAGCTGGTGACTTTCTCAAGGGTGATGGTAGTGGATGTGTTTCCATCTATGGACTTAAGTTTGATGACGAGACTTTTGATGCCAAACACACTGGTCCTGGCCTCTTGTCAATGGCAAATAGTGGACCAAATACAAATGGGAGCCAGTTCTTTATCACTTGCGCGAAATGTGACTGGCTTGACAATAAACATGTTGTGTTCGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTTAGGAAGATTGAGAATGTGGCTACAGGACCCAACAATCGCCCTAAACTAGCTTGTGTTATTGCTGAATGCGGAGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006139 GO:0006396 GO:0006397 GO:0006457 GO:0006464 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016018 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0033218 GO:0034641 GO:0036211 GO:0042277 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045069 GO:0045070 GO:0046483 GO:0046540 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0065003 GO:0065007 GO:0070013 GO:0071001 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140096 GO:1901360 GO:1901564 GO:1903900 GO:1903902 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

192

Amino Acids

20.59

Weight (kDa)

8.15

Isoelectric Point (pI)

23.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	28 - 189	8.4e-48	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38730
fragaria_vesca	FvH4_7g03600 FvH4_7g03600
malus_domestica	MD02G1278600.v1.1 MD07G1046700.v1.1
prunus_persica	Prupe.2G041900_v2.0.a1
pyrus_communis	pycom02g23890 pycom07g03370
rosa_chinensis	RchiOBHm_Chr1g0326221
rosa_laevigata	RLG00000030082
rosa_multiflora	Rmu_sc0000028.1_g000002 Rmu_sc0004192.1_g000028
rosa_roxburghii	Rroxscaffold_4G00323940
rosa_rugosa	Rorug01G0057800
rosa_samantha	Rh1AG074700 Rh1BG060200
rosa_wichuraiana	Rw1G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	2 cut(s)	98, 225
AccII	CGCG	1 cut(s)	425
AciI	CCGC	4 cut(s)	49, 108, 156, 564
AcsI	RAATTY	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	2 cut(s)	100, 191
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflII	CTTAAG	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	130, 200, 266, 545
AluI	AGCT	4 cut(s)	130, 200, 266, 545
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	326
AoxI	GGCC	2 cut(s)	50, 361
ApoI	RAATTY	1 cut(s)	163
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
Asp718I	GGTACC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	3 cut(s)	356, 386, 521
AsuHPI	GGTGA	4 cut(s)	82, 253, 281, 296
AvaII	GGWCC	3 cut(s)	356, 386, 521
BanI	GGYRCC	2 cut(s)	98, 225
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	132
BccI	CCATC	5 cut(s)	101, 118, 281, 314, 473
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	516
BfrI	CTTAAG	1 cut(s)	317
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	3 cut(s)	356, 386, 521
BmgT120I	GGNCC	3 cut(s)	356, 386, 521
BmiI	GGNNCC	4 cut(s)	100, 227, 404, 523
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	3 cut(s)	52, 126, 331
BpiI	GAAGAC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	2 cut(s)	110, 182
Bse1I	ACTGG	5 cut(s)	209, 229, 358, 406, 440
BseBI	CCWGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	5 cut(s)	209, 229, 358, 406, 440
BseRI	GAGGAG	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	52, 363
BshNI	GGYRCC	2 cut(s)	98, 225
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	9, 111, 183
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	566
BsnI	GGCC	2 cut(s)	52, 363
Bsp1286I	GDGCHC	1 cut(s)	132
BspACI	CCGC	4 cut(s)	49, 108, 156, 564
BspANI	GGCC	2 cut(s)	52, 363
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	4 cut(s)	100, 227, 404, 523
BspQI	GCTCTTC	1 cut(s)	137
BspT107I	GGYRCC	2 cut(s)	98, 225
BspTI	CTTAAG	1 cut(s)	317
BsrFI	RCCGGY	2 cut(s)	110, 182
BsrI	ACTGG	5 cut(s)	209, 229, 358, 406, 440
BssAI	RCCGGY	2 cut(s)	110, 182
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	302
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	425
BstMAI	GTCTC	1 cut(s)	326
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 143
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	425
BstV2I	GAAGAC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	52, 363
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	2 cut(s)	110, 182
Cfr13I	GGNCC	3 cut(s)	356, 386, 521
Csp6I	GTAC	2 cut(s)	99, 190
CviAII	CATG	2 cut(s)	256, 452
CviJI	RGCY	9 cut(s)	52, 130, 200, 266, 363, 405, 439, 515, 545
CviKI_1	RGCY	9 cut(s)	52, 130, 200, 266, 363, 405, 439, 515, 545
CviQI	GTAC	2 cut(s)	99, 190
DdeI	CTNAG	1 cut(s)	159
DraIII	CACNNNGTG	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	3 cut(s)	356, 386, 521
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	2 cut(s)	259, 455
FaiI	YATR	4 cut(s)	104, 257, 312, 453
FatI	CATG	2 cut(s)	255, 451
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	309
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	52, 363
HapII	CCGG	3 cut(s)	9, 111, 183
HhaI	GCGC	1 cut(s)	425
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	259, 455
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	3 cut(s)	9, 111, 183
HphI	GGTGA	4 cut(s)	82, 253, 281, 296
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188III	TCNNGA	3 cut(s)	121, 256, 463
Hpy8I	GTNNAC	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 143
HpyF3I	CTNAG	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	259, 455
HspAI	GCGC	1 cut(s)	423
KpnI	GGTACC	1 cut(s)	102
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	127, 402
LweI	GCATC	3 cut(s)	52, 126, 331
MaeI	CTAG	1 cut(s)	542
MaeIII	GTNAC	3 cut(s)	215, 269, 431
MboII	GAAGA	4 cut(s)	70, 73, 124, 511
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	163, 173
MnlI	CCTC	4 cut(s)	8, 23, 63, 374
MseI	TTAA	2 cut(s)	246, 318
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	3 cut(s)	9, 111, 183
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	2 cut(s)	49, 143
NlaIII	CATG	2 cut(s)	259, 455
NlaIV	GGNNCC	4 cut(s)	100, 227, 404, 523
NmuCI	GTSAC	2 cut(s)	269, 431
NspI	RCATGY	1 cut(s)	455
PagI	TCATGA	1 cut(s)	255
PciI	ACATGT	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	521
PscI	ACATGT	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	4 cut(s)	100, 227, 404, 523
PspPI	GGNCC	3 cut(s)	356, 386, 521
PspPPI	RGGWCCY	1 cut(s)	521
RsaI	GTAC	2 cut(s)	100, 191
RsaNI	GTAC	2 cut(s)	99, 190
RseI	CAYNNNNRTG	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	246, 318
SatI	GCNGC	1 cut(s)	50
Sau96I	GGNCC	3 cut(s)	356, 386, 521
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	4 cut(s)	132, 202, 268, 547
SfaNI	GCATC	3 cut(s)	52, 126, 331
SfcI	CTRYAG	1 cut(s)	516
SgrAI	CRCCGGYG	1 cut(s)	182
SinI	GGWCC	3 cut(s)	356, 386, 521
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	278, 317
SmoI	CTYRAG	2 cut(s)	278, 317
Sse9I	AATT	2 cut(s)	163, 173
SsiI	CCGC	4 cut(s)	49, 108, 156, 564
SspMI	CTAG	1 cut(s)	542
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	358
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	163, 173
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	246, 318
Tru9I	TTAA	2 cut(s)	246, 318
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	269, 431
Tsp45I	GTSAC	2 cut(s)	269, 431
TspDTI	ATGAA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	358
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	3 cut(s)	356, 386, 521
XapI	RAATTY	1 cut(s)	163
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.