AT2G39705

dvl11,rtfl8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014913
Physical Location & Seq
Forward (+)
16556801 .. 16558268
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39705.1

Sequence Viewer

Length: 264 bp
ATGGCGTCATCGTCTAGCCTGACTCGATCGGGAAGCGTCCACCTAGACGAGAAGTGGAAACTGTCAAAGAAAGACGGCGGCGCGTCGAGGATCACGCGCTCTTCATCGACCTCATCTTCTTCCTTCAACGGCAAGAAACAGGGGAGATGTGCTTTTACGAGAAAGTGTGCAAGATTGGTTAAAGAACAGAGAGCTCGTTTCTACATCATGCGTCGATGCGTAATCATGCTTATTTGCTGGAGAGATAATTACTCTGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

87

Amino Acids

9.89

Weight (kDa)

10.54

Isoelectric Point (pI)

56.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 61 - 79 4.9e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39705
malus_domestica MD01G1136300.v1.1 MD07G1201200.v1.1
prunus_persica Prupe.2G237800_v2.0.a1
pyrus_communis pycom01g15700 pycom07g18820
rosa_chinensis RchiOBHm_Chr1g0367921
rosa_laevigata RLG00000027258
rosa_multiflora Rmu_ssc0000395.1_g000046
rosa_roxburghii Rroxscaffold_4G00289130
rosa_rugosa Rorug01G0337600
rosa_samantha Rh1AG344500 Rh1BG306600 Rh1CG322200 Rh1DG338800
rosa_wichuraiana Rw1G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 83, 97
AciI CCGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 196
AlwI GGATC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 83, 99
BanII GRGCYC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 196
BceAI ACGGC 2 cut(s) 91, 145
BfaI CTAG 2 cut(s) 15, 44
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmsI GCATC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 5
Bsh1236I CGCG 2 cut(s) 83, 97
Bsh1285I CGRYCG 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 26, 90
BspACI CCGC 1 cut(s) 78
BspFNI CGCG 2 cut(s) 83, 97
BspPI GGATC 1 cut(s) 98
BspQI GCTCTTC 1 cut(s) 106
BssMI GATC 2 cut(s) 26, 90
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 5
BstFNI CGCG 2 cut(s) 83, 97
BstHHI GCGC 2 cut(s) 83, 99
BstKTI GATC 2 cut(s) 29, 93
BstMBI GATC 2 cut(s) 26, 90
BstMCI CGRYCG 1 cut(s) 29
BstUI CGCG 2 cut(s) 83, 97
CfoI GCGC 2 cut(s) 83, 99
CseI GACGC 3 cut(s) 25, 72, 200
CviAII CATG 2 cut(s) 208, 226
CviJI RGCY 2 cut(s) 18, 194
CviKI_1 RGCY 2 cut(s) 18, 194
DpnI GATC 2 cut(s) 28, 92
DpnII GATC 2 cut(s) 26, 90
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 196
FaeI CATG 2 cut(s) 211, 229
FaiI YATR 2 cut(s) 209, 227
FatI CATG 2 cut(s) 207, 225
Fnu4HI GCNGC 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 2 cut(s) 15, 44
GlaI GCGC 2 cut(s) 82, 98
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 259
HgaI GACGC 3 cut(s) 25, 72, 200
HhaI GCGC 2 cut(s) 83, 99
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 211, 229
Hin6I GCGC 2 cut(s) 81, 97
HinP1I GCGC 2 cut(s) 81, 97
HinfI GANTC 2 cut(s) 22, 257
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 2 cut(s) 88, 216
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 211, 229
HspAI GCGC 2 cut(s) 81, 97
Kzo9I GATC 2 cut(s) 26, 90
LguI GCTCTTC 1 cut(s) 106
LpnPI CCDG 3 cut(s) 32, 125, 223
LweI GCATC 1 cut(s) 206
MaeI CTAG 2 cut(s) 15, 44
MalI GATC 2 cut(s) 28, 92
MboI GATC 2 cut(s) 26, 90
MboII GAAGA 3 cut(s) 93, 108, 111
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 1 cut(s) 247
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 2 cut(s) 81, 121
MseI TTAA 2 cut(s) 180, 262
MvnI CGCG 2 cut(s) 83, 97
NdeII GATC 2 cut(s) 26, 90
NlaIII CATG 2 cut(s) 211, 229
PciSI GCTCTTC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 80
Ple19I CGATCG 1 cut(s) 29
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 196
SapI GCTCTTC 1 cut(s) 106
SaqAI TTAA 2 cut(s) 180, 262
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 26, 90
SchI GAGTC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 196
SetI ASST 3 cut(s) 45, 113, 196
SfaNI GCATC 1 cut(s) 206
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 78
SspMI CTAG 2 cut(s) 15, 44
SstI GAGCTC 1 cut(s) 196
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 4 cut(s) 25, 86, 107, 214
TasI AATT 1 cut(s) 247
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 180, 262
Tru9I TTAA 2 cut(s) 180, 262
TspDTI ATGAA 1 cut(s) 93
XspI CTAG 2 cut(s) 15, 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.