MD07G1201200.v1.1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014913
Physical Location & Seq
Forward (+)
27939474 .. 27939773
300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1201200.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGCTTCTGTTTCTGTACCTGCTGCTGGCGGCAGTGCTGCTACTCCAAGCTCTTCTCATCACCATCCGCCTCCCTTTTACTTCGACGAGAAGTGGAAGCTGTCGAAGAAAGAAGGGTCGTCGAGATCGAGCCGTTCATCGTCTTCTATTCATCTGATGAAGAATTCATCGCGGTCGAATCGACGGTGCTCGTTTTCCAGAAAGTGTGCGAGGTTGGTGAAGGAGCAGAGAGCTCGGTTCTACATCATGAGGCGCTGCGTCACCATGCTCATCTGCTGGCACGATTACAGCGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

100

Amino Acids

11.26

Weight (kDa)

10.35

Isoelectric Point (pI)

86.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 74 - 92 7.7e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39705
malus_domestica MD01G1136300.v1.1 MD07G1201200.v1.1
prunus_persica Prupe.2G237800_v2.0.a1
pyrus_communis pycom01g15700 pycom07g18820
rosa_chinensis RchiOBHm_Chr1g0367921
rosa_laevigata RLG00000027258
rosa_multiflora Rmu_ssc0000395.1_g000046
rosa_roxburghii Rroxscaffold_4G00289130
rosa_rugosa Rorug01G0337600
rosa_samantha Rh1AG344500 Rh1BG306600 Rh1CG322200 Rh1DG338800
rosa_wichuraiana Rw1G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AccII CGCG 1 cut(s) 172
AciI CCGC 3 cut(s) 30, 68, 172
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 26
AluBI AGCT 3 cut(s) 51, 100, 233
AluI AGCT 3 cut(s) 51, 100, 233
Alw21I GWGCWC 2 cut(s) 191, 235
ApeKI GCWGC 3 cut(s) 23, 38, 255
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 53, 229, 253
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 191, 235
BbvI GCAGC 3 cut(s) 10, 25, 242
BccI CCATC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BfoI RGCGCY 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 4 cut(s) 24, 31, 39, 256
BlsI GCNGC 4 cut(s) 25, 32, 40, 257
BpiI GAAGAC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 10, 25, 242
Bsh1236I CGCG 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 176
BsiHKAI GWGCWC 2 cut(s) 191, 235
BslI CCNNNNNNNGG 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 191, 235
Bsp143I GATC 1 cut(s) 125
BspACI CCGC 3 cut(s) 30, 68, 172
BspFNI CGCG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 58
BssMI GATC 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 28, 278
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstMCI CGRYCG 1 cut(s) 176
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 3 cut(s) 10, 25, 242
BstV2I GAAGAC 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 28, 278
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 255
CseI GACGC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 17
CviAII CATG 2 cut(s) 247, 265
CviJI RGCY 5 cut(s) 5, 51, 100, 132, 233
CviKI_1 RGCY 5 cut(s) 5, 51, 100, 132, 233
CviQI GTAC 1 cut(s) 17
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
EciI GGCGGA 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 235
FaeI CATG 2 cut(s) 250, 268
FaiI YATR 3 cut(s) 248, 266, 298
FatI CATG 2 cut(s) 246, 264
Fnu4HI GCNGC 4 cut(s) 24, 31, 39, 256
FokI GGATG 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 4 cut(s) 24, 31, 39, 256
GlaI GCGC 1 cut(s) 254
GluI GCNGC 4 cut(s) 24, 31, 39, 256
HaeII RGCGCY 1 cut(s) 256
HgaI GACGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 255
Hin1II CATG 2 cut(s) 250, 268
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HinfI GANTC 2 cut(s) 178, 293
HphI GGTGA 3 cut(s) 53, 229, 253
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 123, 198, 247
Hpy99I CGWCG 3 cut(s) 89, 124, 186
HpyAV CCTTC 2 cut(s) 107, 214
HpyCH4III ACNGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 250, 268
HspAI GCGC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 125
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 4 cut(s) 12, 33, 211, 262
Lsp1109I GCAGC 3 cut(s) 10, 25, 242
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 4 cut(s) 45, 118, 135, 172
MhlI GDGCHC 2 cut(s) 191, 235
MluCI AATT 1 cut(s) 163
MnlI CCTC 3 cut(s) 81, 204, 243
MvnI CGCG 1 cut(s) 172
NdeII GATC 1 cut(s) 125
NlaIII CATG 2 cut(s) 250, 268
NmuCI GTSAC 1 cut(s) 259
PagI TCATGA 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 288
PfeI GAWTC 2 cut(s) 178, 293
PkrI GCNGC 4 cut(s) 25, 32, 40, 257
Psp124BI GAGCTC 1 cut(s) 235
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SacI GAGCTC 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 58
SatI GCNGC 4 cut(s) 24, 31, 39, 256
Sau3AI GATC 1 cut(s) 125
SduI GDGCHC 2 cut(s) 191, 235
SetI ASST 5 cut(s) 22, 53, 102, 215, 235
Sse9I AATT 1 cut(s) 163
SsiI CCGC 3 cut(s) 30, 68, 172
SstI GAGCTC 1 cut(s) 235
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 6 cut(s) 84, 104, 122, 128, 176, 181
TasI AATT 1 cut(s) 163
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 2 cut(s) 178, 293
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 23, 38, 255
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 5 cut(s) 126, 140, 156, 173, 285
TspRI CASTG 1 cut(s) 40
XapI RAATTY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.