Rh1AG344500

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014913
Physical Location & Seq
Forward (+)
58042395 .. 58043760
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG344500.1

Sequence Viewer

Length: 375 bp
ATGCTTCTCCAAAAGCCAAAACGAAAGCACTTGCAACTGTTCTTGCATCACCATTCTTCAGTTATGGCTTCTTCTGTTTCTGCTAGTACCACCTCTGCCACCGCTACTGCTTCAACTGGTCATCATCATCATCCACCACCCAATTTCTATTTCGATGAGAAATGGAAGCTGTCAAAGAAAGAAGGGTCATCTCTGTCCTTGTCTTCTTCAAGATCAAGCCGCTCTAGTTCATCTAATTGCCACAAGTCTTCAAACAGAAGGTGTGCGTTTTCAAGGAAGTGTGCTAGATTGGTCAAGGAACAGAGAGCAAGGTTCTACATAGTGAGACGCTGCGTCACTATGCTCATCTGCTGGCACGATTACTCTGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

124

Amino Acids

14.15

Weight (kDa)

10.35

Isoelectric Point (pI)

70.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 99 - 117 2.8e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39705
malus_domestica MD01G1136300.v1.1 MD07G1201200.v1.1
prunus_persica Prupe.2G237800_v2.0.a1
pyrus_communis pycom01g15700 pycom07g18820
rosa_chinensis RchiOBHm_Chr1g0367921
rosa_laevigata RLG00000027258
rosa_multiflora Rmu_ssc0000395.1_g000046
rosa_roxburghii Rroxscaffold_4G00289130
rosa_rugosa Rorug01G0337600
rosa_samantha Rh1AG344500 Rh1BG306600 Rh1CG322200 Rh1DG338800
rosa_wichuraiana Rw1G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 222
AciI CCGC 2 cut(s) 102, 220
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 4 cut(s) 114, 210, 252, 273
AhdI GACNNNNNGTC 1 cut(s) 332
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 41
BbsI GAAGAC 2 cut(s) 195, 240
BbvI GCAGC 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 3 cut(s) 84, 225, 285
BisI GCNGC 2 cut(s) 220, 331
BlsI GCNGC 2 cut(s) 221, 332
BmeRI GACNNNNNGTC 1 cut(s) 332
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 2 cut(s) 195, 240
Bse1I ACTGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 319
BsmBI CGTCTC 1 cut(s) 319
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 2 cut(s) 102, 220
BspHI TCATGA 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 121
BssMI GATC 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 353
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 317
BstV2I GAAGAC 2 cut(s) 195, 240
BtsCI GGATG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 353
CciI TCATGA 1 cut(s) 371
CseI GACGC 2 cut(s) 322, 336
Csp6I GTAC 1 cut(s) 87
CviAII CATG 1 cut(s) 372
CviJI RGCY 4 cut(s) 16, 68, 169, 219
CviKI_1 RGCY 4 cut(s) 16, 68, 169, 219
CviQI GTAC 1 cut(s) 87
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
DriI GACNNNNNGTC 1 cut(s) 332
Eam1105I GACNNNNNGTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 1 cut(s) 375
FaiI YATR 4 cut(s) 65, 320, 341, 373
FatI CATG 1 cut(s) 371
Fnu4HI GCNGC 2 cut(s) 220, 331
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 220, 331
FspBI CTAG 3 cut(s) 84, 225, 285
GluI GCNGC 2 cut(s) 220, 331
HgaI GACGC 2 cut(s) 322, 336
Hin1II CATG 1 cut(s) 375
HinfI GANTC 1 cut(s) 368
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 2 cut(s) 210, 372
HpyAV CCTTC 2 cut(s) 176, 252
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 34, 46
Hsp92II CATG 1 cut(s) 375
Kzo9I GATC 1 cut(s) 212
LpnPI CCDG 2 cut(s) 102, 337
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 1 cut(s) 55
MaeI CTAG 3 cut(s) 84, 225, 285
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 214
MbiI CCGCTC 1 cut(s) 222
MboI GATC 1 cut(s) 212
MboII GAAGA 5 cut(s) 48, 63, 195, 198, 240
MluCI AATT 2 cut(s) 142, 235
MnlI CCTC 1 cut(s) 103
NdeII GATC 1 cut(s) 212
NlaIII CATG 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 334
PagI TCATGA 1 cut(s) 371
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 2 cut(s) 221, 332
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 2 cut(s) 220, 331
Sau3AI GATC 1 cut(s) 212
SetI ASST 4 cut(s) 95, 171, 263, 314
SfaNI GCATC 1 cut(s) 55
Sse9I AATT 2 cut(s) 142, 235
SsiI CCGC 2 cut(s) 102, 220
SspMI CTAG 3 cut(s) 84, 225, 285
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 142, 235
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 368
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 219, 360
XspI CTAG 3 cut(s) 84, 225, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.