RchiOBHm_Chr1g0367921

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014913
Physical Location & Seq
Forward (+)
58134798 .. 58135533
736 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59229

Sequence Viewer

Length: 378 bp
ATGCTTCTCCAAAATCCAAAACGAAAGCACTTGCAACTGTTCTTGCATCACCATTCTTCAGTTATGGCTTCTTCTGTTTCTGCTAGTACCACCTCTGCCACCGCTACTGCATCAACTGGTCATCATCATCATCATCCACCACCCAATTTCTATTTCGATGAGAAATGGAAGCTGTCAAAGAAAGAAGGGTCATCTCTGTCCTTGTCTTCTTCAAGATCAAGCCGCTCTAGTTCATCTAATTGCCACAAGTCTTCAAACAGAAGGTGTGCGTTTTCAAGGAAGTGTGCTAGATTGGTCAAGGAACAGAGAGCAAGGTTCTACATAGTGAGACGCTGCGTCACTATGCTCATCTGCTGGCACGATTACTCTGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

125

Amino Acids

14.27

Weight (kDa)

10.3

Isoelectric Point (pI)

70.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 100 - 118 2.8e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39705
malus_domestica MD01G1136300.v1.1 MD07G1201200.v1.1
prunus_persica Prupe.2G237800_v2.0.a1
pyrus_communis pycom01g15700 pycom07g18820
rosa_chinensis RchiOBHm_Chr1g0367921
rosa_laevigata RLG00000027258
rosa_multiflora Rmu_ssc0000395.1_g000046
rosa_roxburghii Rroxscaffold_4G00289130
rosa_rugosa Rorug01G0337600
rosa_samantha Rh1AG344500 Rh1BG306600 Rh1CG322200 Rh1DG338800
rosa_wichuraiana Rw1G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 225
AciI CCGC 2 cut(s) 102, 223
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 3 cut(s) 213, 255, 276
AhdI GACNNNNNGTC 1 cut(s) 335
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 41
BbsI GAAGAC 2 cut(s) 198, 243
BbvI GCAGC 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 3 cut(s) 84, 228, 288
BisI GCNGC 2 cut(s) 223, 334
BlsI GCNGC 2 cut(s) 224, 335
BmeRI GACNNNNNGTC 1 cut(s) 335
BmsI GCATC 2 cut(s) 55, 119
BpiI GAAGAC 2 cut(s) 198, 243
Bse1I ACTGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 322
BsmBI CGTCTC 1 cut(s) 322
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 2 cut(s) 102, 223
BspHI TCATGA 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 121
BssMI GATC 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 356
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 320
BstV2I GAAGAC 2 cut(s) 198, 243
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 356
CciI TCATGA 1 cut(s) 374
CseI GACGC 2 cut(s) 325, 339
Csp6I GTAC 1 cut(s) 87
CviAII CATG 1 cut(s) 375
CviJI RGCY 3 cut(s) 68, 172, 222
CviKI_1 RGCY 3 cut(s) 68, 172, 222
CviQI GTAC 1 cut(s) 87
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
DriI GACNNNNNGTC 1 cut(s) 335
Eam1105I GACNNNNNGTC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 1 cut(s) 378
FaiI YATR 4 cut(s) 65, 323, 344, 376
FatI CATG 1 cut(s) 374
Fnu4HI GCNGC 2 cut(s) 223, 334
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 223, 334
FspBI CTAG 3 cut(s) 84, 228, 288
GluI GCNGC 2 cut(s) 223, 334
HgaI GACGC 2 cut(s) 325, 339
Hin1II CATG 1 cut(s) 378
HinfI GANTC 1 cut(s) 371
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 2 cut(s) 213, 375
HpyAV CCTTC 2 cut(s) 179, 255
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 34, 46, 110
Hsp92II CATG 1 cut(s) 378
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 2 cut(s) 102, 340
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 2 cut(s) 55, 119
MaeI CTAG 3 cut(s) 84, 228, 288
MaeIII GTNAC 1 cut(s) 337
MalI GATC 1 cut(s) 217
MbiI CCGCTC 1 cut(s) 225
MboI GATC 1 cut(s) 215
MboII GAAGA 5 cut(s) 48, 63, 198, 201, 243
MluCI AATT 2 cut(s) 145, 238
MnlI CCTC 1 cut(s) 103
NdeII GATC 1 cut(s) 215
NlaIII CATG 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 337
PagI TCATGA 1 cut(s) 374
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 224, 335
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 2 cut(s) 223, 334
Sau3AI GATC 1 cut(s) 215
SetI ASST 4 cut(s) 95, 174, 266, 317
SfaNI GCATC 2 cut(s) 55, 119
Sse9I AATT 2 cut(s) 145, 238
SsiI CCGC 2 cut(s) 102, 223
SspMI CTAG 3 cut(s) 84, 228, 288
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 145, 238
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 1 cut(s) 371
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 222, 363
XspI CTAG 3 cut(s) 84, 228, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.