AT3G01590

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020227
Physical Location & Seq
Forward (+)
225855 .. 228628
2774 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01590.2

Sequence Viewer

Length: 921 bp
ATGCCTTTGAACTTAGGCAACGATGGCGATGGGTCTTCCCGGATTATTTTGACTGAGCCTCGCGGATCTACTGCTGAGGTGCTTCTATTTGGAGGACAAGTCATTTCTTGGAAAAATGAAAGGAGGGAAGAACTGCTTTATATGAGCAGCAAGGCTCAATATAAGCCACCCAAGGCGATCAGAGGAGGAATACCTGTTTGCTTTCCACAGTTTGGAAACTTTGGTGGACTTGAGCGACATGGATTTGCCCGGAACAAATTCTGGTCACATGATGAAGATCCTTCGCCTCTACCTCCTGCTAACAAACAATCATCTGTTGATCTGATATTGAAGTCCACAGAAGATGACTTGAAGACCTGGCCGCATAGTTTTGAACTCCGTATTCGCATTTCTATTAGCCCTGGGAAGCTTACTTTGATCCCTCGTGTGAGGAACATTGACTCAAAGGCATTCTCCTTTATGTTTGCACTGCGAAACTACTTATATGTATCTGACATAAGTGAAGTTCGAGTTGAGGGTTTGGAGACACTGGATTATCTAGACAACTTGATTGGTAAAGAAAGATTCACTGAGCAAGCAGACGCGATTACCTTTGACGGGGAGGTCGATAGAGTGTACTTGAACACACCAACAAAGATTGCGGTCATAGATCATGAGCGAAAGAGGACCATCGAGTTGCGAAAGGAAGGCATGCCCAATGCAGTTGTGTGGAACCCCTGGGACAAAAAGGCAAAGACCATAGCTGATATGGGAGATGAAGATTACAAAACAATGCTTTGTGTAGATTCTGGAGTAATCGAACCTCTGGTATTGTTAAAGCCTCGTGAAGAGTGGAAAGGCAGACAAGAACTATCCATCGTCTCATCAAGTTACTGCAGCGGACAGCTTGATCCACGCAAGGTTCTTTACGGAGATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

306

Amino Acids

34.74

Weight (kDa)

5.94

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 15 - 284 1.3e-60 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01590 AT3G01590 AT5G14500
malus_domestica MD17G1023600.v1.1
prunus_persica Prupe.3G292800_v2.0.a1
pyrus_communis pycom17g02010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 212
AccII CGCG 2 cut(s) 63, 584
AciI CCGC 4 cut(s) 63, 362, 641, 879
AclWI GGATC 4 cut(s) 73, 272, 412, 884
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 1 cut(s) 617
AfiI CCNNNNNNNGG 2 cut(s) 212, 597
AgsI TTSAA 5 cut(s) 10, 331, 352, 374, 622
AjnI CCWGG 3 cut(s) 356, 400, 716
AluBI AGCT 3 cut(s) 409, 743, 886
AluI AGCT 3 cut(s) 409, 743, 886
Alw26I GTCTC 2 cut(s) 518, 865
AlwI GGATC 4 cut(s) 73, 272, 412, 884
AoxI GGCC 1 cut(s) 359
ApeKI GCWGC 2 cut(s) 147, 876
ApoI RAATTY 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 666
AsuC2I CCSGG 2 cut(s) 40, 250
AvaII GGWCC 1 cut(s) 666
BauI CACGAG 2 cut(s) 423, 822
BbsI GAAGAC 2 cut(s) 27, 359
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 159, 888
BccI CCATC 4 cut(s) 17, 23, 677, 863
BciT130I CCWGG 3 cut(s) 358, 402, 718
BcnI CCSGG 2 cut(s) 40, 250
BcoDI GTCTC 2 cut(s) 518, 865
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 874
BisI GCNGC 3 cut(s) 148, 362, 877
BlsI GCNGC 3 cut(s) 149, 363, 878
Bme1390I CCNGG 5 cut(s) 40, 250, 358, 402, 718
Bme18I GGWCC 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 666
BmiI GGNNCC 1 cut(s) 713
BmrFI CCNGG 5 cut(s) 40, 250, 358, 402, 718
BpiI GAAGAC 2 cut(s) 27, 359
BpmI CTGGAG 1 cut(s) 810
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 2 cut(s) 40, 250
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 5 cut(s) 171, 400, 401, 716, 717
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 597
Bse1I ACTGG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 3 cut(s) 358, 402, 718
BseDI CCNNGG 5 cut(s) 171, 400, 401, 716, 717
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 212, 597
BseMII CTCAG 3 cut(s) 45, 66, 561
BseNI ACTGG 1 cut(s) 534
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 159, 888
Bsh1236I CGCG 2 cut(s) 63, 584
BshFI GGCC 1 cut(s) 361
BsiSI CCGG 2 cut(s) 40, 250
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 2 cut(s) 212, 597
BsmAI GTCTC 2 cut(s) 518, 865
BsmBI CGTCTC 1 cut(s) 865
BsmFI GGGAC 1 cut(s) 734
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 1 cut(s) 361
Bsp143I GATC 7 cut(s) 65, 177, 277, 319, 417, 649, 889
BspACI CCGC 4 cut(s) 63, 362, 641, 879
BspANI GGCC 1 cut(s) 361
BspCNI CTCAG 3 cut(s) 46, 67, 562
BspFNI CGCG 2 cut(s) 63, 584
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 713
BspMAI CTGCAG 1 cut(s) 878
BspPI GGATC 4 cut(s) 73, 272, 412, 884
BsrI ACTGG 1 cut(s) 534
BssECI CCNNGG 5 cut(s) 171, 400, 401, 716, 717
BssMI GATC 7 cut(s) 65, 177, 277, 319, 417, 649, 889
BssSI CACGAG 2 cut(s) 423, 822
BssT1I CCWWGG 1 cut(s) 171
Bst2BI CACGAG 2 cut(s) 423, 822
Bst2UI CCWGG 3 cut(s) 358, 402, 718
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 822
BstC8I GCNNGC 2 cut(s) 576, 692
BstDEI CTNAG 4 cut(s) 13, 54, 75, 570
BstFNI CGCG 2 cut(s) 63, 584
BstKTI GATC 7 cut(s) 68, 180, 280, 322, 420, 652, 892
BstMAI GTCTC 2 cut(s) 518, 865
BstMBI GATC 7 cut(s) 65, 177, 277, 319, 417, 649, 889
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 3 cut(s) 358, 402, 718
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 5 cut(s) 38, 248, 356, 400, 716
BstSFI CTRYAG 1 cut(s) 874
BstUI CGCG 2 cut(s) 63, 584
BstV1I GCAGC 2 cut(s) 159, 888
BstV2I GAAGAC 2 cut(s) 27, 359
BstX2I RGATCY 2 cut(s) 65, 277
BstYI RGATCY 2 cut(s) 65, 277
BsuRI GGCC 1 cut(s) 361
BtgZI GCGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 3 cut(s) 467, 527, 567
Cac8I GCNNGC 2 cut(s) 576, 692
CciI TCATGA 1 cut(s) 652
Cfr13I GGNCC 1 cut(s) 666
CseI GACGC 1 cut(s) 590
Csp6I GTAC 1 cut(s) 616
CviAII CATG 4 cut(s) 239, 269, 653, 691
CviJI RGCY 9 cut(s) 58, 155, 166, 361, 399, 409, 743, 820, 886
CviKI_1 RGCY 9 cut(s) 58, 155, 166, 361, 399, 409, 743, 820, 886
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 4 cut(s) 13, 54, 75, 570
DpnI GATC 7 cut(s) 67, 179, 279, 321, 419, 651, 891
DpnII GATC 7 cut(s) 65, 177, 277, 319, 417, 649, 889
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
EaeI YGGCCR 1 cut(s) 359
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Eco130I CCWWGG 1 cut(s) 171
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 1 cut(s) 666
EcoRII CCWGG 3 cut(s) 356, 400, 716
EcoRV GATATC 1 cut(s) 916
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 865
FaeI CATG 4 cut(s) 242, 272, 656, 694
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 734
FatI CATG 4 cut(s) 238, 268, 652, 690
Fnu4HI GCNGC 3 cut(s) 148, 362, 877
Fsp4HI GCNGC 3 cut(s) 148, 362, 877
FspBI CTAG 1 cut(s) 539
GluI GCNGC 3 cut(s) 148, 362, 877
GsuI CTGGAG 1 cut(s) 810
HaeIII GGCC 1 cut(s) 361
HapII CCGG 2 cut(s) 40, 250
HgaI GACGC 1 cut(s) 590
Hin1II CATG 4 cut(s) 242, 272, 656, 694
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 3 cut(s) 440, 564, 785
HpaII CCGG 2 cut(s) 40, 250
Hpy166II GTNNAC 3 cut(s) 227, 336, 616
Hpy188I TCNGA 4 cut(s) 182, 324, 493, 920
Hpy188III TCNNGA 4 cut(s) 539, 653, 789, 824
Hpy8I GTNNAC 3 cut(s) 227, 336, 616
HpyAV CCTTC 2 cut(s) 291, 680
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 467, 701, 876
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 4 cut(s) 13, 54, 75, 570
Hsp92II CATG 4 cut(s) 242, 272, 656, 694
Kzo9I GATC 7 cut(s) 65, 177, 277, 319, 417, 649, 889
Lsp1109I GCAGC 2 cut(s) 159, 888
MaeI CTAG 1 cut(s) 539
MaeIII GTNAC 2 cut(s) 264, 869
MalI GATC 7 cut(s) 67, 179, 279, 321, 419, 651, 891
MboI GATC 7 cut(s) 65, 177, 277, 319, 417, 649, 889
MboII GAAGA 7 cut(s) 27, 140, 287, 353, 364, 770, 839
MflI RGATCY 2 cut(s) 65, 277
MluCI AATT 1 cut(s) 257
MlyI GAGTC 1 cut(s) 434
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 1 cut(s) 815
MspA1I CMGCKG 1 cut(s) 879
MspI CCGG 2 cut(s) 40, 250
MspR9I CCNGG 5 cut(s) 40, 250, 358, 402, 718
Mva1269I GAATGC 1 cut(s) 449
MvaI CCWGG 3 cut(s) 358, 402, 718
MvnI CGCG 2 cut(s) 63, 584
MwoI GCNNNNNNNGC 1 cut(s) 24
NciI CCSGG 2 cut(s) 40, 250
NdeII GATC 7 cut(s) 65, 177, 277, 319, 417, 649, 889
NlaIII CATG 4 cut(s) 242, 272, 656, 694
NlaIV GGNNCC 1 cut(s) 713
NmuCI GTSAC 1 cut(s) 264
NspI RCATGY 1 cut(s) 694
PaeI GCATGC 1 cut(s) 694
PagI TCATGA 1 cut(s) 652
PasI CCCWGGG 2 cut(s) 401, 717
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PctI GAATGC 1 cut(s) 449
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 564, 785
PflMI CCANNNNNTGG 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 38
PkrI GCNGC 3 cut(s) 149, 363, 878
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp6I CCWGG 3 cut(s) 356, 400, 716
PspGI CCWGG 3 cut(s) 356, 400, 716
PspN4I GGNNCC 1 cut(s) 713
PspPI GGNCC 1 cut(s) 666
PstI CTGCAG 1 cut(s) 878
PsuI RGATCY 2 cut(s) 65, 277
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
SaqAI TTAA 1 cut(s) 815
SatI GCNGC 3 cut(s) 148, 362, 877
Sau3AI GATC 7 cut(s) 65, 177, 277, 319, 417, 649, 889
Sau96I GGNCC 1 cut(s) 666
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 5 cut(s) 40, 250, 358, 402, 718
SfcI CTRYAG 1 cut(s) 874
SinI GGWCC 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SphI GCATGC 1 cut(s) 694
Sse9I AATT 1 cut(s) 257
SsiI CCGC 4 cut(s) 63, 362, 641, 879
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 5 cut(s) 38, 248, 356, 400, 716
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 4 cut(s) 508, 606, 672, 798
TasI AATT 1 cut(s) 257
TatI WGTACW 1 cut(s) 615
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 2 cut(s) 564, 785
Tru1I TTAA 1 cut(s) 815
Tru9I TTAA 1 cut(s) 815
TscAI CASTG 3 cut(s) 474, 534, 574
TseFI GTSAC 1 cut(s) 264
TseI GCWGC 2 cut(s) 147, 876
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 3 cut(s) 132, 288, 771
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 3 cut(s) 474, 534, 574
Van91I CCANNNNNTGG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 666
XapI RAATTY 1 cut(s) 257
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.