Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017885

Physical Location & Seq

Genomic Coordinates Reverse (-)

539611 .. 541523

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02555.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAATCATTGTAGCCTTCAGCAGAATGCATTCTTGTCTCGTGAAGAATCGAGAGGATTTGTTCCTATCTATTCTCATCCAGTGGACTCTGTTGTTTGCCCTAAGCCCCGTCGTGCAAACAACGTTATTCGTCCCTTTAGATTACATTTTAGTCTTTCAGGAGCTGATGATGTATGTGATTCTAAAGCCGGGGAAGATCTTTTGGACATATTTCGTAGAAAGGAATCAGTATCATCTAGATCACCCCCATTTTTCCTTGGGTCTCCCCCTAGCCGAGCAGCAAACCCGTTAGCTCAAGATGCACGCTTTGGAGATGAGAAACTCAACACTGTCTCACCCTCACTCTCCCCTCTTCTCCCATCTGCATCTCGTGTTAAAAGTGGTTGTGGTAGAATGAAGTTTGGGGTGAAACCAGCAACTGTTAGAGTAGAAGGGTTTGATTGCTTGAACAGGGACCGCCCAAACTCAAGTATCCCTGCCATGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.74

Weight (kDa)

9.54

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02555 AT3G02555
malus_domestica	MD09G1252200.v1.1 MD17G1244500.v1.1
prunus_persica	Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1
pyrus_communis	pycom09g16860 pycom17g24730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	457
AclI	AACGTT	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	1 cut(s)	448
AluBI	AGCT	2 cut(s)	164, 293
AluI	AGCT	2 cut(s)	164, 293
Alw26I	GTCTC	3 cut(s)	42, 267, 337
AlwNI	CAGNNNCTG	2 cut(s)	164, 419
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	454
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	3 cut(s)	234, 327, 418
AvaII	GGWCC	1 cut(s)	454
BaeI	ACNNNNGTAYC	2 cut(s)	454, 487
BauI	CACGAG	2 cut(s)	39, 369
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	367
BciVI	GTATCC	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	3 cut(s)	42, 267, 337
BfaI	CTAG	3 cut(s)	237, 270, 487
BfuI	GTATCC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	289, 374
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	279, 451
BpuMI	CCSGG	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	189, 256, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	189, 256, 480
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	2 cut(s)	117, 467
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	3 cut(s)	42, 267, 337
BsmFI	GGGAC	2 cut(s)	117, 467
BsmI	GAATGC	2 cut(s)	29, 31
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	196, 239
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	3 cut(s)	189, 256, 480
BssMI	GATC	2 cut(s)	196, 239
BssSI	CACGAG	2 cut(s)	39, 369
BssT1I	CCWWGG	2 cut(s)	256, 480
Bst2BI	CACGAG	2 cut(s)	39, 369
Bst4CI	ACNGT	2 cut(s)	331, 421
Bst6I	CTCTTC	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	2 cut(s)	199, 242
BstMAI	GTCTC	3 cut(s)	42, 267, 337
BstMBI	GATC	2 cut(s)	196, 239
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	482
BsuRI	GGCC	1 cut(s)	485
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	87, 327
Cac8I	GCNNGC	1 cut(s)	304
CaiI	CAGNNNCTG	2 cut(s)	164, 419
Cfr13I	GGNCC	1 cut(s)	454
CviAII	CATG	1 cut(s)	481
CviJI	RGCY	7 cut(s)	15, 106, 164, 188, 273, 293, 485
CviKI_1	RGCY	7 cut(s)	15, 106, 164, 188, 273, 293, 485
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	198, 241
DpnII	GATC	2 cut(s)	196, 239
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	256, 480
Eco31I	GGTCTC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	256, 480
EcoT22I	ATGCAT	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	256, 480
FaeI	CATG	1 cut(s)	484
FaiI	YATR	3 cut(s)	175, 209, 482
FaqI	GGGAC	2 cut(s)	117, 467
FatI	CATG	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	3 cut(s)	237, 270, 487
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	1 cut(s)	484
HinfI	GANTC	5 cut(s)	4, 47, 86, 179, 224
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	3 cut(s)	234, 327, 418
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	5 cut(s)	41, 51, 159, 237, 296
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	26, 425
HpyCH4III	ACNGT	2 cut(s)	331, 421
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	29, 116, 302, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	196, 239
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	5 cut(s)	93, 144, 202, 426, 436
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	2 cut(s)	289, 374
MaeI	CTAG	3 cut(s)	237, 270, 487
MaeII	ACGT	1 cut(s)	123
MalI	GATC	2 cut(s)	198, 241
MboI	GATC	2 cut(s)	196, 239
MboII	GAAGA	3 cut(s)	56, 206, 344
MflI	RGATCY	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	3 cut(s)	47, 349, 360
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	375
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	190
Mva1269I	GAATGC	2 cut(s)	29, 31
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	190
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	2 cut(s)	196, 239
NlaIII	CATG	1 cut(s)	484
NlaIV	GGNNCC	1 cut(s)	455
NmeAIII	GCCGAG	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	31
PctI	GAATGC	2 cut(s)	29, 31
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	4 cut(s)	4, 47, 179, 224
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp1406I	AACGTT	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	1 cut(s)	454
PstNI	CAGNNNCTG	2 cut(s)	164, 419
PsuI	RGATCY	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	196, 239
Sau96I	GGNCC	1 cut(s)	454
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	3 cut(s)	126, 166, 295
SfaNI	GCATC	2 cut(s)	289, 374
SinI	GGWCC	1 cut(s)	454
SmlI	CTYRAG	2 cut(s)	294, 466
SmoI	CTYRAG	2 cut(s)	294, 466
SsiI	CCGC	1 cut(s)	457
SspMI	CTAG	3 cut(s)	237, 270, 487
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	2 cut(s)	256, 480
TaaI	ACNGT	2 cut(s)	331, 421
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	50
TfiI	GAWTC	4 cut(s)	4, 47, 179, 224
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	87, 334
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	17, 410
TspRI	CASTG	2 cut(s)	87, 334
VpaK11BI	GGWCC	1 cut(s)	454
XbaI	TCTAGA	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	3 cut(s)	237, 270, 487
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.