Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0017885

Physical Location & Seq

Genomic Coordinates Reverse (-)

17587123 .. 17589669

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G157300.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAACCATTTCAATGTTCAGCACCAGAACGCCTCTTATGTGGGCTGTGAAGACGTCAGAGGGTCTGCCTTTATCTCTGATACCAAGGACCCTGTGGTGTGCCCCAAGCCTAGGCGAGTTGGGATTTTGTCCAACAGCCCCATTAGGCCCTTGAGATGGCAGATGAGCAGTCATCAATCTGAGTTTAGTGACTCAAAAGCTGGGGCAGAGCTTCTGGACCTCATTCTCAGGAAGGAGGGCTATGGATTGGAACAATCTTTGAACGATGTTGCCTCCTCACCCCCATATTTTTGTGGCTCCCCTCCCAGTAGGGCTTCTAACCCATTAATTCAAGATGCCCGATTCGGAGATGAGAAGTTTACTCCTGTTTCGGCATCTCCATCCCCATCTACTTTATCGTCCCCACGCAAAGCAGGTTGTGTTAGAATGAAGTACGGACTTAAACCTGCTGCAGTTAGAGTAGAGGGATTTGATTGTCTCAATAGGGATCGCCAAAATTCCAGCATCCCAGCATTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.9

Weight (kDa)

8.88

Isoelectric Point (pI)

61.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02555 AT3G02555
malus_domestica	MD09G1252200.v1.1 MD17G1244500.v1.1
prunus_persica	Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1
pyrus_communis	pycom09g16860 pycom17g24730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	57
Acc36I	ACCTGC	2 cut(s)	404, 454
AclWI	GGATC	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	496
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	111, 156
AgsI	TTSAA	3 cut(s)	13, 262, 332
AluBI	AGCT	2 cut(s)	200, 211
AluI	AGCT	2 cut(s)	200, 211
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	495
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	496
AseI	ATTAAT	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	8
AspA2I	CCTAGG	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	88, 147, 217
AsuHPI	GGTGA	1 cut(s)	270
AvaII	GGWCC	2 cut(s)	88, 217
AvrII	CCTAGG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	3 cut(s)	150, 388, 394
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	450
BfuAI	ACCTGC	2 cut(s)	404, 454
BisI	GCNGC	1 cut(s)	450
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	451
Bme18I	GGWCC	2 cut(s)	88, 217
BmgT120I	GGNCC	3 cut(s)	88, 147, 217
BmiI	GGNNCC	2 cut(s)	90, 298
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	325, 383, 513
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	84, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 156
Bse1I	ACTGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	84, 110
BseGI	GGATG	2 cut(s)	380, 504
BseLI	CCNNNNNNNGG	2 cut(s)	111, 156
BseMII	CTCAG	2 cut(s)	171, 241
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	436
BseYI	CCCAGC	2 cut(s)	200, 508
BshFI	GGCC	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	111, 156
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	487
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	172, 240
BspLI	GGNNCC	2 cut(s)	90, 298
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	2 cut(s)	404, 454
BspPI	GGATC	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	84, 110
BssMI	GATC	1 cut(s)	487
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	2 cut(s)	84, 110
BstACI	GRCGYC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	180, 227
BstF5I	GGATG	2 cut(s)	380, 504
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	380, 504
BveI	ACCTGC	2 cut(s)	404, 454
Cfr13I	GGNCC	3 cut(s)	88, 147, 217
Csp6I	GTAC	1 cut(s)	433
CviJI	RGCY	9 cut(s)	45, 109, 138, 148, 200, 211, 240, 297, 314
CviKI_1	RGCY	9 cut(s)	45, 109, 138, 148, 200, 211, 240, 297, 314
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	2 cut(s)	180, 227
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eco130I	CCWWGG	2 cut(s)	84, 110
Eco47I	GGWCC	2 cut(s)	88, 217
EcoO109I	RGGNCCY	2 cut(s)	88, 147
EcoT14I	CCWWGG	2 cut(s)	84, 110
ErhI	CCWWGG	2 cut(s)	84, 110
FaiI	YATR	3 cut(s)	39, 243, 286
FaqI	GGGAC	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	2 cut(s)	367, 491
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	450
GsaI	CCCAGC	2 cut(s)	204, 512
HaeIII	GGCC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	191, 342
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	4 cut(s)	59, 79, 181, 347
Hpy188III	TCNNGA	3 cut(s)	215, 229, 332
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	180, 227
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	3 cut(s)	325, 383, 513
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	2 cut(s)	327, 496
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	8 cut(s)	43, 53, 229, 230, 283, 286, 312, 457
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	326, 441
MslI	CAYNNNNRTG	1 cut(s)	12
NdeII	GATC	1 cut(s)	487
NlaIV	GGNNCC	2 cut(s)	90, 298
NmuCI	GTSAC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	88
PshBI	ATTAAT	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	88
PspFI	CCCAGC	2 cut(s)	200, 508
PspN4I	GGNNCC	2 cut(s)	90, 298
PspPI	GGNCC	3 cut(s)	88, 147, 217
PspPPI	RGGWCCY	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	454
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	326, 441
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	3 cut(s)	88, 147, 217
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	6 cut(s)	57, 202, 213, 222, 418, 448
SfaNI	GCATC	3 cut(s)	325, 383, 513
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	2 cut(s)	88, 217
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	327, 496
SspMI	CTAG	1 cut(s)	111
StyI	CCWWGG	2 cut(s)	84, 110
TaiI	ACGT	1 cut(s)	57
TasI	AATT	2 cut(s)	327, 496
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	2 cut(s)	326, 441
Tru9I	TTAA	2 cut(s)	326, 441
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	17, 443
TspGWI	ACGGA	1 cut(s)	450
VpaK11BI	GGWCC	2 cut(s)	88, 217
VspI	ATTAAT	1 cut(s)	326
XapI	RAATTY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmaJI	CCTAGG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	111
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.