Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0017885

Physical Location & Seq

Genomic Coordinates Reverse (-)

32389049 .. 32391197

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1252200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAACCATTTCAATGTTCAGCAGCAGAACGCCTCTTTCGTGGGCTGTGAAGACATCCGAGGTTCTGCCTTGATGTCTGACACCAAGGAGCCTGTGATTTGCCCCAAGCCCAGGCGAGTTGGGAATTTGTCAAACAACCCCGTTAGGCCCTTGCGGTGGCAGATGAGTCATCAACCCGAGTTATGTGACTCAAAAGCTGGGGCAGAGCTTCTGGACCTTATTCTCAGGAAGGAGGGTTATGGGTTGGAGCAATCATCTAACGAGGTTGCCATATCGCCCCCATATTTTTGCGGTGTTTCCCCTCCTAGTAGGGCTGCTAACCCTTTAATTCAAGATGCCCGATTTGGAGATGAGAAGCTCACTCCTGTTTCAGCATTGCCTGTTCCATCTCCATCAGCTTTATCATCGCCACGCAAAGCAGGTTGTGTTAGAATGAAGTATGGGCTTAAACCTGCTGCAGTTAGAGTAGAGGGATTTGACTGTCTCAATAGGGATCGCCAAAGTTCCCGCATCCCAGCATTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.12

Weight (kDa)

9.0

Isoelectric Point (pI)

66.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02555 AT3G02555
malus_domestica	MD09G1252200.v1.1 MD17G1244500.v1.1
prunus_persica	Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1 Prupe.3G157300_v2.0.a1
pyrus_communis	pycom09g16860 pycom17g24730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	410, 460
AciI	CCGC	3 cut(s)	154, 291, 508
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	111, 156
AgsI	TTSAA	2 cut(s)	13, 332
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	4 cut(s)	197, 208, 358, 398
AluI	AGCT	4 cut(s)	197, 208, 358, 398
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	22, 314, 455
ApoI	RAATTY	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	147, 214
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	34, 301, 442
BccI	CCATC	2 cut(s)	394, 400
BciT130I	CCWGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	456
BfuAI	ACCTGC	2 cut(s)	410, 460
BisI	GCNGC	3 cut(s)	23, 315, 456
BlsI	GCNGC	3 cut(s)	24, 316, 457
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	147, 214
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	325, 519
BpiI	GAAGAC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	58, 84, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 156
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	58, 84, 110
BseGI	GGATG	2 cut(s)	54, 510
BseLI	CCNNNNNNNGG	2 cut(s)	111, 156
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	34, 301, 442
BseYI	CCCAGC	2 cut(s)	197, 514
BshFI	GGCC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	111, 156
BsmAI	GTCTC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	493
BspACI	CCGC	3 cut(s)	154, 291, 508
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	460
BspMI	ACCTGC	2 cut(s)	410, 460
BspPI	GGATC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	374
BssECI	CCNNGG	3 cut(s)	58, 84, 110
BssMI	GATC	1 cut(s)	493
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	482
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	54, 510
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	1 cut(s)	493
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	34, 301, 442
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	54, 510
BveI	ACCTGC	2 cut(s)	410, 460
Cfr13I	GGNCC	2 cut(s)	147, 214
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaiI	YATR	5 cut(s)	184, 240, 272, 283, 441
FauI	CCCGC	1 cut(s)	515
Fnu4HI	GCNGC	3 cut(s)	23, 315, 456
FokI	GGATG	2 cut(s)	41, 497
Fsp4HI	GCNGC	3 cut(s)	23, 315, 456
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	3 cut(s)	23, 315, 456
GsaI	CCCAGC	2 cut(s)	201, 518
HaeIII	GGCC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	166, 188
Hpy188I	TCNGA	2 cut(s)	59, 79
Hpy188III	TCNNGA	3 cut(s)	212, 226, 332
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	1 cut(s)	458
HpyF3I	CTNAG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	2 cut(s)	88, 247
Lsp1109I	GCAGC	3 cut(s)	34, 301, 442
LweI	GCATC	2 cut(s)	325, 519
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	1 cut(s)	62
MluCI	AATT	2 cut(s)	124, 327
MlyI	GAGTC	2 cut(s)	175, 182
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	6 cut(s)	43, 53, 226, 256, 312, 463
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	326, 447
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
NdeII	GATC	1 cut(s)	493
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	24, 316, 457
PleI	GAGTC	2 cut(s)	174, 182
PpsI	GAGTC	2 cut(s)	174, 182
Psp6I	CCWGG	1 cut(s)	110
PspFI	CCCAGC	2 cut(s)	197, 514
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	2 cut(s)	147, 214
PstI	CTGCAG	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	326, 447
SatI	GCNGC	3 cut(s)	23, 315, 456
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	2 cut(s)	147, 214
SchI	GAGTC	2 cut(s)	175, 182
ScrFI	CCNGG	1 cut(s)	112
SetI	ASST	9 cut(s)	64, 199, 210, 219, 267, 360, 400, 424, 454
SfaNI	GCATC	2 cut(s)	325, 519
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	124, 327
SsiI	CCGC	3 cut(s)	154, 291, 508
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	482
TasI	AATT	2 cut(s)	124, 327
Tru1I	TTAA	2 cut(s)	326, 447
Tru9I	TTAA	2 cut(s)	326, 447
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	3 cut(s)	22, 314, 455
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	17, 449
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.