pycom09g16860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0017885
Physical Location & Seq
Forward (+)
17262895 .. 17264299
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16860.4

Sequence Viewer

Length: 678 bp
ATGAAAATGACGTCGTACCACCGTCGCCACCACTATATAAAAATAAAACGAATCCCATATCCCGTTACCACCCTCCTTCCTTCCGCCACTGCCCCTCCGTCCCTCGCCTTCTTCCCCCGGAGGCTTCCCGCCAGAACAGGAAAGGTGTCGAAAATGAACCATTTCAATGTTCAGCAGCAGAACGCCTCTTTCGTGGGCTGTGAAGACATCCGAGGTTCTGCCTTGATGTCTGACACCAAGGAGCCTGTGATTTGCCCCAAGCCCAGGCGAGTCGGGATTTTGTCAAACAACCCCATTAGGCCCTTGCGGTGGCAGATGAGTCATCAACCCGAGTTATGTGACTCAAAAGCTGGGGCAGAGCTTCTGGACCTTATTCTCAGCAAGGAGGGTTATGGGTTGGAGCAATCATCTAACGAGGTTGCCTTATCGCCCCCATATTTTTGCATTTCCCCTCCTAGTAGGGCTGCTAACCCATTAATTCAAGATGCCCGATTTGGAGATGAGAAGCTTACTCCTGTTTCAGCATTGCCTGTTCCATCTCCATCAACTTTATCATCGCCACGCAAAGCAGGTTGTGTTAGAATGAAGTATGGGCTTAAACCTGCTGCAGCTAGAGTAGAGGGATTTGACTATCTCAATAGGGATCGCCAAAGTTCCCGCATCCCAGCATTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.98

Weight (kDa)

9.94

Isoelectric Point (pI)

69.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
Acc36I ACCTGC 2 cut(s) 560, 610
AciI CCGC 4 cut(s) 84, 129, 307, 658
AclWI GGATC 1 cut(s) 651
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 2 cut(s) 264, 309
AgsI TTSAA 2 cut(s) 166, 482
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 4 cut(s) 350, 361, 508, 611
AluI AGCT 4 cut(s) 350, 361, 508, 611
AlwI GGATC 1 cut(s) 651
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 4 cut(s) 175, 464, 605, 608
AseI ATTAAT 1 cut(s) 476
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 300, 367
AsuC2I CCSGG 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 4 cut(s) 187, 451, 592, 620
BccI CCATC 2 cut(s) 544, 550
BciT130I CCWGG 1 cut(s) 265
BcnI CCSGG 1 cut(s) 118
BfaI CTAG 2 cut(s) 456, 612
BfmI CTRYAG 1 cut(s) 606
BfuAI ACCTGC 2 cut(s) 560, 610
BisI GCNGC 4 cut(s) 176, 465, 606, 609
BlsI GCNGC 4 cut(s) 177, 466, 607, 610
Bme1390I CCNGG 2 cut(s) 118, 265
Bme18I GGWCC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 300, 367
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 118, 265
BmsI GCATC 2 cut(s) 475, 669
BpiI GAAGAC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 116, 211, 237, 263
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 309
Bse3DI GCAATG 1 cut(s) 524
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 4 cut(s) 116, 211, 237, 263
BseGI GGATG 2 cut(s) 207, 660
BseLI CCNNNNNNNGG 2 cut(s) 264, 309
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 1 cut(s) 391
BseXI GCAGC 4 cut(s) 187, 451, 592, 620
BseYI CCCAGC 2 cut(s) 350, 664
BshFI GGCC 1 cut(s) 301
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 2 cut(s) 264, 309
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 329
Bsp143I GATC 1 cut(s) 643
BspACI CCGC 4 cut(s) 84, 129, 307, 658
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 610
BspMI ACCTGC 2 cut(s) 560, 610
BspPI GGATC 1 cut(s) 651
BsrDI GCAATG 1 cut(s) 524
BssECI CCNNGG 4 cut(s) 116, 211, 237, 263
BssMI GATC 1 cut(s) 643
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 207, 660
BstKTI GATC 1 cut(s) 646
BstMBI GATC 1 cut(s) 643
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 2 cut(s) 116, 263
BstSFI CTRYAG 1 cut(s) 606
BstV1I GCAGC 4 cut(s) 187, 451, 592, 620
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 2 cut(s) 207, 660
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
BveI ACCTGC 2 cut(s) 560, 610
Cfr13I GGNCC 2 cut(s) 300, 367
Csp6I GTAC 1 cut(s) 16
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 1 cut(s) 377
DpnI GATC 1 cut(s) 645
DpnII GATC 1 cut(s) 643
EciI GGCGGA 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 367
Eco88I CYCGRG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaiI YATR 7 cut(s) 36, 38, 58, 337, 393, 436, 591
FaqI GGGAC 1 cut(s) 85
FauI CCCGC 2 cut(s) 136, 665
Fnu4HI GCNGC 4 cut(s) 176, 465, 606, 609
FokI GGATG 2 cut(s) 194, 647
Fsp4HI GCNGC 4 cut(s) 176, 465, 606, 609
FspBI CTAG 2 cut(s) 456, 612
GluI GCNGC 4 cut(s) 176, 465, 606, 609
GsaI CCCAGC 2 cut(s) 354, 668
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 4 cut(s) 51, 270, 319, 341
HpaII CCGG 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 212, 232
Hpy188III TCNNGA 3 cut(s) 274, 365, 482
Hpy99I CGWCG 2 cut(s) 16, 27
HpyAV CCTTC 3 cut(s) 86, 90, 118
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 444, 608
HpyF3I CTNAG 1 cut(s) 377
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 11
Kzo9I GATC 1 cut(s) 643
LmnI GCTCC 2 cut(s) 241, 400
Lsp1109I GCAGC 4 cut(s) 187, 451, 592, 620
LweI GCATC 2 cut(s) 475, 669
MaeI CTAG 2 cut(s) 456, 612
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 64, 338
MalI GATC 1 cut(s) 645
MboI GATC 1 cut(s) 643
MboII GAAGA 2 cut(s) 103, 215
MluCI AATT 1 cut(s) 477
MlyI GAGTC 3 cut(s) 279, 328, 335
MmeI TCCRAC 1 cut(s) 378
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 2 cut(s) 476, 597
MslI CAYNNNNRTG 1 cut(s) 165
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 118, 265
MvaI CCWGG 1 cut(s) 265
NciI CCSGG 1 cut(s) 118
NdeII GATC 1 cut(s) 643
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 4 cut(s) 177, 466, 607, 610
PleI GAGTC 3 cut(s) 278, 327, 335
PpsI GAGTC 3 cut(s) 278, 327, 335
PshBI ATTAAT 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 263
PspFI CCCAGC 2 cut(s) 350, 664
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 300, 367
PstI CTGCAG 1 cut(s) 610
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 476, 597
SatI GCNGC 4 cut(s) 176, 465, 606, 609
Sau3AI GATC 1 cut(s) 643
Sau96I GGNCC 2 cut(s) 300, 367
SchI GAGTC 3 cut(s) 279, 328, 335
ScrFI CCNGG 2 cut(s) 118, 265
SfaNI GCATC 2 cut(s) 475, 669
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 1 cut(s) 477
SsiI CCGC 4 cut(s) 84, 129, 307, 658
SspMI CTAG 2 cut(s) 456, 612
StyD4I CCNGG 2 cut(s) 116, 263
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 149
TasI AATT 1 cut(s) 477
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 2 cut(s) 476, 597
Tru9I TTAA 2 cut(s) 476, 597
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 4 cut(s) 175, 464, 605, 608
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 17, 170, 599
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 367
VspI ATTAAT 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 2 cut(s) 456, 612
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.