AT3G05340

repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015422
Physical Location & Seq
Reverse (-)
1523463 .. 1526166
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05340.1

Sequence Viewer

Length: 1977 bp
ATGAATTCGAGATGGGTGATTCAGAAACTGACCTCTCACCTTCCTTCTTGCTTATCTACCGTTTTGTCCCCTTCGAAAATCCTAATCCGGCAGAGCCCAAATTACCAAGTCTCGACCTTTCTCCTCAACCATGTCGATATGAGCCTTCTCTTATCCATCTGCGGCAGAGAAGGCTGGTTTCCTCATCTGGGTCCTTGTCTCCACGCCTCCATTATCAAAAATCCTGAATTTTTCGAGCCTGTAGATGCTGATATCCATCGAAACGCTCTGGTTGTTTGGAACTCTTTGCTTTCTCTGTATGCGAAATGTGGGAAGTTAGTTGATGCCATTAAGTTGTTCGACGAAATGCCCATGAGAGACGTTATTTCGCAGAATATAGTGTTTTATGGGTTTCTGAGAAACAGAGAGACTGAGTCTGGTTTTGTATTGCTTAAACGAATGCTTGGGTCAGGTGGGTTTGATCATGCGACTTTGACGATTGTTTTATCAGTGTGTGATACGCCAGAGTTCTGTTTGGTGACAAAGATGATTCACGCTTTAGCAATTTTAAGCGGTTATGACAAGGAAATTTCCGTGGGGAACAAACTGATCACATCTTATTTCAAATGTGGATGTTCAGTTTCTGGGAGAGGGGTTTTTGATGGGATGTCACATCGAAATGTCATCACTTTGACAGCTGTGATTTCGGGTCTGATAGAGAATGAGTTACACGAAGATGGTCTAAGATTGTTTAGTTTGATGCGTAGAGGATTGGTCCATCCTAACTCAGTAACTTATTTGAGTGCTCTAGCTGCTTGTTCTGGTTCACAGCGGATAGTGGAGGGGCAACAGATTCATGCCCTTTTGTGGAAATATGGGATTGAATCAGAATTGTGCATTGAGAGTGCGCTAATGGATATGTACTCTAAATGTGGAAGCATTGAAGATGCGTGGACGATTTTCGAGTCCACGACGGAAGTTGATGAAGTTTCCATGACTGTGATATTAGTTGGTTTAGCACAAAATGGGTCAGAGGAAGAAGCTATACAGTTCTTCATTAGAATGCTTCAAGCTGGAGTAGAGATTGATGCAAATGTAGTCTCAGCTGTTCTTGGAGTTTCGTTTATCGATAATTCTTTGGGTCTAGGCAAGCAACTGCATTCTTTGGTTATCAAACGAAAATTCTCCGGTAACACCTTTGTCAACAATGGACTCATTAACATGTACTCAAAATGTGGAGATCTGACCGACTCACAAACTGTCTTTAGACGAATGCCGAAGAGGAACTATGTTTCATGGAACTCGATGATTGCAGCATTTGCTCGCCATGGTCATGGATTAGCTGCCTTGAAACTATACGAAGAAATGACTACGCTAGAAGTGAAGCCTACAGATGTTACCTTTCTATCACTACTTCATGCTTGTAGCCATGTAGGGTTGATTGATAAAGGCCGAGAACTCTTAAACGAGATGAAAGAGGTCCATGGAATCGAGCCCAGGACAGAGCATTATACCTGTATTATTGACATGTTGGGTCGAGCTGGTCTTTTGAAAGAAGCAAAGAGCTTTATAGACTCATTGCCTTTGAAACCTGACTGTAAAATTTGGCAAGCGTTGCTTGGAGCTTGTAGTTTCCATGGTGATACAGAAGTAGGGGAATATGCAGCTGAACAGTTGTTTCAAACTGCACCTGATAGCTCATCTGCTCATATCTTGATCGCTAACATATATTCATCCAGAGGAAAATGGAAGGAGAGGGCGAAGACGATCAAGAGAATGAAAGCAATGGGAGTGACTAAAGAAACAGGCATAAGTTCGATTGAAATTGAGCATAAAACACACAGCTTTGTGGTTGAGGACAAATTGCATCCACAAGCAGAGGCTATATATGATGTTCTGTCTGGATTGTTTCCGGTTATGGTAGATGAAGGTTACAGACCTGATAAGAGGTTTATTCTGTGTTATACAGGAGATGACAGGAACGGCACGGTATCATAG

Protein Analysis

658

Amino Acids

73.13

Weight (kDa)

6.23

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 91 - 120 2.3e-07 PPR repeat
PPR_2 PF13041 91 - 120 6.4e-06 PPR repeat family
PPR_2 PF13041 219 - 266 1.1e-06 PPR repeat family
PPR_2 PF13041 422 - 469 2.9e-11 PPR repeat family
PPR PF01535 424 - 450 3e-06 PPR repeat
E_motif PF20431 539 - 601 1e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05340
fragaria_vesca FvH4_6g05850
malus_domestica MD12G1219000.v1.1
prunus_persica Prupe.6G325500_v2.0.a1
pyrus_communis pycom12g20470
rosa_chinensis RchiOBHm_Chr3g0454801
rosa_laevigata RLG00000025406
rosa_multiflora Rmu_sc0001792.1_g000013 Rmu_sc0013126.1_g000006
rosa_roxburghii Rroxscaffold_6G00424720
rosa_rugosa Rorug03G0002600
rosa_samantha Rh3AG062600 Rh3BG064500 Rh3CG063400 Rh3DG064300
rosa_wichuraiana Rw3G004880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 162, 552, 811
AcsI RAATTY 5 cut(s) 4, 227, 567, 1160, 1581
AfaI GTAC 2 cut(s) 902, 1205
AfiI CCNNNNNNNGG 2 cut(s) 188, 846
AflIII ACRYGT 2 cut(s) 1200, 1506
AgsI TTSAA 9 cut(s) 604, 863, 923, 1049, 1330, 1531, 1567, 1661, 1802
AjnI CCWGG 1 cut(s) 1475
Alw21I GWGCWC 1 cut(s) 787
Alw26I GTCTC 5 cut(s) 115, 203, 351, 401, 1084
AlwNI CAGNNNCTG 2 cut(s) 28, 623
AoxI GGCC 1 cut(s) 1429
ApeKI GCWGC 4 cut(s) 791, 1292, 1322, 1643
ApoI RAATTY 5 cut(s) 4, 227, 567, 1160, 1581
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 3 cut(s) 191, 754, 1459
AsuHPI GGTGA 4 cut(s) 28, 29, 529, 1631
AsuII TTCGAA 1 cut(s) 74
AvaII GGWCC 3 cut(s) 191, 754, 1459
BaeI ACNNNNGTAYC 2 cut(s) 1614, 1647
BanII GRGCYC 2 cut(s) 98, 1476
BarI GAAGNNNNNNTAC 2 cut(s) 1008, 1040
BbsI GAAGAC 1 cut(s) 1748
Bbv12I GWGCWC 1 cut(s) 787
BbvI GCAGC 4 cut(s) 778, 1304, 1309, 1655
BccI CCATC 6 cut(s) 6, 164, 264, 635, 710, 765
BciT130I CCWGG 1 cut(s) 1477
BclI TGATCA 2 cut(s) 460, 588
BcoDI GTCTC 5 cut(s) 115, 203, 351, 401, 1084
BfaI CTAG 3 cut(s) 788, 1124, 1355
BfmI CTRYAG 2 cut(s) 240, 1368
BglII AGATCT 1 cut(s) 1219
BisI GCNGC 5 cut(s) 163, 792, 1293, 1323, 1644
BlsI GCNGC 5 cut(s) 164, 793, 1294, 1324, 1645
Bme1390I CCNGG 1 cut(s) 1477
Bme18I GGWCC 3 cut(s) 191, 754, 1459
BmgT120I GGNCC 3 cut(s) 191, 754, 1459
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 1477
BmsI GCATC 6 cut(s) 235, 313, 729, 916, 1057, 1855
BpiI GAAGAC 1 cut(s) 1748
BpmI CTGGAG 1 cut(s) 1074
Bpu14I TTCGAA 1 cut(s) 74
Bsa29I ATCGAT 1 cut(s) 1107
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 5 cut(s) 573, 1306, 1462, 1475, 1615
BsaWI WCCGGW 2 cut(s) 1166, 1891
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 846
Bse3DI GCAATG 2 cut(s) 1556, 1770
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 1 cut(s) 1477
BseCI ATCGAT 1 cut(s) 1107
BseDI CCNNGG 5 cut(s) 573, 1306, 1462, 1475, 1615
BseGI GGATG 5 cut(s) 617, 651, 757, 1712, 1846
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 188, 846
BseMI GCAATG 2 cut(s) 1556, 1770
BseMII CTCAG 4 cut(s) 386, 402, 780, 1095
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 4 cut(s) 778, 1304, 1309, 1655
BsgI GTGCAG 1 cut(s) 1650
BshFI GGCC 1 cut(s) 1431
BshVI ATCGAT 1 cut(s) 1107
BsiHKAI GWGCWC 1 cut(s) 787
BsiSI CCGG 3 cut(s) 88, 1167, 1892
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 2 cut(s) 188, 846
BsmAI GTCTC 5 cut(s) 115, 203, 351, 401, 1084
BsmBI CGTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 52
BsmI GAATGC 4 cut(s) 444, 1047, 1138, 1257
BsnI GGCC 1 cut(s) 1431
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 3 cut(s) 98, 787, 1476
Bsp143I GATC 5 cut(s) 460, 588, 1219, 1695, 1746
Bsp19I CCATGG 3 cut(s) 1306, 1462, 1615
BspACI CCGC 3 cut(s) 162, 552, 811
BspANI GGCC 1 cut(s) 1431
BspCNI CTCAG 4 cut(s) 387, 403, 779, 1094
BspDI ATCGAT 1 cut(s) 1107
BspLI GGNNCC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 1556, 1770
BssECI CCNNGG 5 cut(s) 573, 1306, 1462, 1475, 1615
BssMI GATC 5 cut(s) 460, 588, 1219, 1695, 1746
BssT1I CCWWGG 3 cut(s) 1306, 1462, 1615
Bst2UI CCWGG 1 cut(s) 1477
Bst4CI ACNGT 7 cut(s) 61, 979, 1029, 1240, 1577, 1653, 1969
Bst6I CTCTTC 1 cut(s) 1253
BstAPI GCANNNNNTGC 2 cut(s) 1298, 1594
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 3 cut(s) 1130, 1303, 1590
BstDEI CTNAG 5 cut(s) 395, 411, 722, 766, 1081
BstDSI CCRYGG 4 cut(s) 573, 1306, 1462, 1615
BstF5I GGATG 5 cut(s) 617, 651, 757, 1712, 1846
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 5 cut(s) 463, 591, 1222, 1698, 1749
BstMAI GTCTC 5 cut(s) 115, 203, 351, 401, 1084
BstMBI GATC 5 cut(s) 460, 588, 1219, 1695, 1746
BstMWI GCNNNNNNNGC 4 cut(s) 171, 791, 1298, 1594
BstNI CCWGG 1 cut(s) 1477
BstNSI RCATGY 2 cut(s) 1204, 1510
BstSCI CCNGG 1 cut(s) 1475
BstSFI CTRYAG 2 cut(s) 240, 1368
BstV1I GCAGC 4 cut(s) 778, 1304, 1309, 1655
BstV2I GAAGAC 1 cut(s) 1748
BstX2I RGATCY 1 cut(s) 1219
BstXI CCANNNNNNTGG 1 cut(s) 1313
BstYI RGATCY 1 cut(s) 1219
Bsu15I ATCGAT 1 cut(s) 1107
BsuRI GGCC 1 cut(s) 1431
BsuTUI ATCGAT 1 cut(s) 1107
BtgI CCRYGG 4 cut(s) 573, 1306, 1462, 1615
BtsCI GGATG 5 cut(s) 617, 651, 757, 1712, 1846
BtsIMutI CAGTG 1 cut(s) 495
Cac8I GCNNGC 3 cut(s) 1130, 1303, 1590
CaiI CAGNNNCTG 2 cut(s) 28, 623
CfoI GCGC 1 cut(s) 889
Cfr13I GGNCC 3 cut(s) 191, 754, 1459
ClaI ATCGAT 1 cut(s) 1107
Csp6I GTAC 2 cut(s) 901, 1204
CviQI GTAC 2 cut(s) 901, 1204
DdeI CTNAG 5 cut(s) 395, 411, 722, 766, 1081
DpnI GATC 5 cut(s) 462, 590, 1221, 1697, 1748
DpnII GATC 5 cut(s) 460, 588, 1219, 1695, 1746
Eam1104I CTCTTC 1 cut(s) 1253
EarI CTCTTC 1 cut(s) 1253
Eco130I CCWWGG 3 cut(s) 1306, 1462, 1615
Eco24I GRGCYC 2 cut(s) 98, 1476
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 3 cut(s) 191, 754, 1459
EcoO109I RGGNCCY 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 1475
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 3 cut(s) 1306, 1462, 1615
EcoT38I GRGCYC 2 cut(s) 98, 1476
ErhI CCWWGG 3 cut(s) 1306, 1462, 1615
Esp3I CGTCTC 1 cut(s) 351
FalI AAGNNNNNCTT 2 cut(s) 1581, 1613
FaqI GGGAC 1 cut(s) 52
FbaI TGATCA 2 cut(s) 460, 588
Fnu4HI GCNGC 5 cut(s) 163, 792, 1293, 1323, 1644
FokI GGATG 5 cut(s) 624, 658, 744, 1699, 1833
FriOI GRGCYC 2 cut(s) 98, 1476
Fsp4HI GCNGC 5 cut(s) 163, 792, 1293, 1323, 1644
FspBI CTAG 3 cut(s) 788, 1124, 1355
GlaI GCGC 1 cut(s) 888
GluI GCNGC 5 cut(s) 163, 792, 1293, 1323, 1644
GsuI CTGGAG 1 cut(s) 1074
HaeIII GGCC 1 cut(s) 1431
HapII CCGG 3 cut(s) 88, 1167, 1892
HhaI GCGC 1 cut(s) 889
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HpaII CCGG 3 cut(s) 88, 1167, 1892
HphI GGTGA 4 cut(s) 28, 29, 529, 1631
Hpy166II GTNNAC 4 cut(s) 806, 933, 948, 1183
Hpy188I TCNGA 6 cut(s) 24, 396, 693, 868, 1012, 1224
Hpy188III TCNNGA 7 cut(s) 9, 112, 224, 1693, 1716, 1750, 1881
Hpy8I GTNNAC 4 cut(s) 806, 933, 948, 1183
Hpy99I CGWCG 2 cut(s) 344, 955
HpyAV CCTTC 7 cut(s) 50, 54, 81, 155, 164, 1723, 1901
HpyCH4III ACNGT 7 cut(s) 61, 979, 1029, 1240, 1577, 1653, 1969
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 7 cut(s) 876, 1070, 1138, 1292, 1643, 1667, 1846
HpyF10VI GCNNNNNNNGC 4 cut(s) 171, 791, 1298, 1594
HpyF3I CTNAG 5 cut(s) 395, 411, 722, 766, 1081
HpySE526I ACGT 1 cut(s) 360
HspAI GCGC 1 cut(s) 887
Ksp22I TGATCA 2 cut(s) 460, 588
Kzo9I GATC 5 cut(s) 460, 588, 1219, 1695, 1746
LmnI GCTCC 1 cut(s) 1601
Lsp1109I GCAGC 4 cut(s) 778, 1304, 1309, 1655
LweI GCATC 6 cut(s) 235, 313, 729, 916, 1057, 1855
MaeI CTAG 3 cut(s) 788, 1124, 1355
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 8 cut(s) 517, 648, 705, 769, 1169, 1375, 1771, 1910
MalI GATC 5 cut(s) 462, 590, 1221, 1697, 1748
MboI GATC 5 cut(s) 460, 588, 1219, 1695, 1746
MboII GAAGA 7 cut(s) 725, 935, 1024, 1028, 1270, 1352, 1753
MflI RGATCY 1 cut(s) 1219
MhlI GDGCHC 3 cut(s) 98, 787, 1476
MlyI GAGTC 5 cut(s) 422, 953, 1185, 1223, 1547
MseI TTAA 5 cut(s) 330, 432, 548, 1197, 1442
MslI CAYNNNNRTG 6 cut(s) 657, 714, 977, 1040, 1199, 1311
MspA1I CMGCKG 4 cut(s) 677, 811, 1085, 1646
MspI CCGG 3 cut(s) 88, 1167, 1892
MspR9I CCNGG 1 cut(s) 1477
Mva1269I GAATGC 4 cut(s) 444, 1047, 1138, 1257
MvaI CCWGG 1 cut(s) 1477
MwoI GCNNNNNNNGC 4 cut(s) 171, 791, 1298, 1594
NcoI CCATGG 3 cut(s) 1306, 1462, 1615
NdeII GATC 5 cut(s) 460, 588, 1219, 1695, 1746
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 1457
NmuCI GTSAC 3 cut(s) 517, 648, 1771
NspI RCATGY 2 cut(s) 1204, 1510
NspV TTCGAA 1 cut(s) 74
PciI ACATGT 2 cut(s) 1200, 1506
PctI GAATGC 4 cut(s) 444, 1047, 1138, 1257
PfeI GAWTC 5 cut(s) 19, 529, 832, 863, 1467
PflFI GACNNNGTC 1 cut(s) 412
PkrI GCNGC 5 cut(s) 164, 793, 1294, 1324, 1645
PleI GAGTC 5 cut(s) 421, 952, 1185, 1223, 1547
PpsI GAGTC 5 cut(s) 421, 952, 1185, 1223, 1547
PpuMI RGGWCCY 1 cut(s) 191
PscI ACATGT 2 cut(s) 1200, 1506
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 1475
PspGI CCWGG 1 cut(s) 1475
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 3 cut(s) 191, 754, 1459
PspPPI RGGWCCY 1 cut(s) 191
PstNI CAGNNNCTG 2 cut(s) 28, 623
PsuI RGATCY 1 cut(s) 1219
PsyI GACNNNGTC 1 cut(s) 412
PvuII CAGCTG 3 cut(s) 677, 1085, 1646
RsaI GTAC 2 cut(s) 902, 1205
RsaNI GTAC 2 cut(s) 901, 1204
RseI CAYNNNNRTG 6 cut(s) 657, 714, 977, 1040, 1199, 1311
SaqAI TTAA 5 cut(s) 330, 432, 548, 1197, 1442
SatI GCNGC 5 cut(s) 163, 792, 1293, 1323, 1644
Sau3AI GATC 5 cut(s) 460, 588, 1219, 1695, 1746
Sau96I GGNCC 3 cut(s) 191, 754, 1459
SchI GAGTC 5 cut(s) 422, 953, 1185, 1223, 1547
ScrFI CCNGG 1 cut(s) 1477
SduI GDGCHC 3 cut(s) 98, 787, 1476
SfaNI GCATC 6 cut(s) 235, 313, 729, 916, 1057, 1855
SfcI CTRYAG 2 cut(s) 240, 1368
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 3 cut(s) 191, 754, 1459
SmiMI CAYNNNNRTG 6 cut(s) 657, 714, 977, 1040, 1199, 1311
SsiI CCGC 3 cut(s) 162, 552, 811
SspMI CTAG 3 cut(s) 788, 1124, 1355
StyD4I CCNGG 1 cut(s) 1475
StyI CCWWGG 3 cut(s) 1306, 1462, 1615
TaaI ACNGT 7 cut(s) 61, 979, 1029, 1240, 1577, 1653, 1969
TaiI ACGT 1 cut(s) 363
TaqII GACCGA 1 cut(s) 1241
TatI WGTACW 2 cut(s) 900, 1203
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 5 cut(s) 19, 529, 832, 863, 1467
Tru1I TTAA 5 cut(s) 330, 432, 548, 1197, 1442
Tru9I TTAA 5 cut(s) 330, 432, 548, 1197, 1442
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 3 cut(s) 517, 648, 1771
TseI GCWGC 4 cut(s) 791, 1292, 1322, 1643
Tsp45I GTSAC 3 cut(s) 517, 648, 1771
TspGWI ACGGA 2 cut(s) 562, 968
TspRI CASTG 1 cut(s) 495
Tth111I GACNNNGTC 1 cut(s) 412
VpaK11BI GGWCC 3 cut(s) 191, 754, 1459
XapI RAATTY 5 cut(s) 4, 227, 567, 1160, 1581
XceI RCATGY 2 cut(s) 1204, 1510
XspI CTAG 3 cut(s) 788, 1124, 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.