Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001792.1

Orthogroup ID

OG0015422

Physical Location & Seq

Genomic Coordinates Forward (+)

51607 .. 53286

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001792.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

atgtacttgaaatgtggtcaagaaaagaatgcagttaagatgttcgacgaaatgcctgtgagagatacggtttcgtggaatactatgatttcggggtttttgagaaatggggagtgtgagattggttttgggtacttcaagcgaatgcgggagtcgggtttttatcgatttgataaagctactttgacttgcattatagcgggttttgatggggtggagtgttgttacttgaacaagatgatgcatggtttggtggttttgaatgggtttgagagggaaactgaagtggggaatgctttgataacatcgtattgtaaatgtgggtgttttggctcagcaagacgggtttttgatgagatgtttgagaggaatgtgattacatggacggcgatgatttcgggccttgcacagaatggtttctatgttgagagcttgaaggtgtttgcggagatgcggagtggtgtggtggaaccgaatgctgtgacgtttttgggctcactcatggcgtgttctggattgcaggcgataagggcggggcgtcaaattcatggacttgtatggaaattgggagttcaatcagacctgtgcattgagagttcattgatggacatgtactcaaaatgtggtagtgtggaagatgcatggagaatatttgagtccactgaagaacttgatgaggtttccatgactgttatccttgtgggatttgcacaaaatgggtttgagactgaagctatccagatttttgtgaaaatgatgaaggcagggattgaaattgacccagacatggtttcagcagttcttggggtatttggtgttgatacttctttaggcctgggaaagcaactccactctttaattgtcaaaaagaattttggttataactcttttgttacaaatgggcttataaatatgtattccaagtgtggagagctggaggattcggctaaagtgttcactcgaatgcctcaaaggaactcggtttcatggaattcaatgattgcagcttttgcccgtcacggagatggctccaaagcattacaattgtatgaaaagatgcaaatggaaggcgtacaaccaacagacattacatttctgtctctagttcatgcttgtagccatgttgggttgatcgaaaggggcatggagtttctgaactctatgaaagaagaacatgggatgagtccgaggccagaacactatgcctgtattgttgacatgttaggtcgggcaggacttctaactgaggctaaaaatttcattaaagaactgcctgagaatcctggtgtacttgtttggcaagcattgcttggtgcttgtagcattcatggtaattctgacatcggtaaatatgctgcagatcagttggttttggcagcaccgcagagtcccgcaccatatgttttgcttgccaatatatattcttctgaaggaaggtggaaagacagagcaaagactattaaggggatgaaggagatgggggtggcaaaagaaacgggtattagttggattgaaattgaaaagaaagttcagagctttgttgttggtgataaaatgcatccacaagcagagatcatttatagggttttggcagaattgcttagacttatgaaagatgaaggatatgtaccggatgagaggtttttactttattacttagatcaagatgaaaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase DnaJ Fer4_15 PPR PPR_2

Protein Analysis

559

Amino Acids

62.5

Weight (kDa)

5.57

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05340
fragaria_vesca	FvH4_6g05850
malus_domestica	MD12G1219000.v1.1
prunus_persica	Prupe.6G325500_v2.0.a1
pyrus_communis	pycom12g20470
rosa_chinensis	RchiOBHm_Chr3g0454801
rosa_laevigata	RLG00000025406
rosa_multiflora	Rmu_sc0001792.1_g000013 Rmu_sc0013126.1_g000006
rosa_roxburghii	Rroxscaffold_6G00424720
rosa_rugosa	Rorug03G0002600
rosa_samantha	Rh3AG062600 Rh3BG064500 Rh3CG063400 Rh3DG064300
rosa_wichuraiana	Rw3G004880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	882, 908
AciI	CCGC	7 cut(s)	148, 200, 446, 454, 533, 1382, 1392
AcsI	RAATTY	4 cut(s)	543, 871, 991, 1255
AcuI	CTGAAG	4 cut(s)	303, 684, 750, 1449
AcyI	GRCGYC	1 cut(s)	538
AfaI	GTAC	6 cut(s)	5, 134, 614, 1074, 1290, 1629
AfiI	CCNNNNNNNGG	1 cut(s)	787
AflIII	ACRYGT	2 cut(s)	609, 1218
AjnI	CCWGG	2 cut(s)	834, 1282
AluBI	AGCT	6 cut(s)	179, 432, 734, 934, 1007, 1536
AluI	AGCT	6 cut(s)	179, 432, 734, 934, 1007, 1536
Alw26I	GTCTC	2 cut(s)	719, 1104
AoxI	GGCC	3 cut(s)	400, 832, 1190
ApeKI	GCWGC	3 cut(s)	1004, 1355, 1376
ApoI	RAATTY	4 cut(s)	543, 871, 991, 1255
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	1559
BanII	GRGCYC	1 cut(s)	497
BarI	GAAGNNNNNNTAC	2 cut(s)	1611, 1643
BbvI	GCAGC	3 cut(s)	1016, 1342, 1388
BccI	CCATC	4 cut(s)	203, 598, 1019, 1471
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	2 cut(s)	836, 1284
BcoDI	GTCTC	2 cut(s)	719, 1104
BfaI	CTAG	1 cut(s)	1103
BfmI	CTRYAG	1 cut(s)	1356
BisI	GCNGC	3 cut(s)	1005, 1356, 1377
BlpI	GCTNAGC	1 cut(s)	334
BlsI	GCNGC	3 cut(s)	1006, 1357, 1378
Bme1390I	CCNGG	2 cut(s)	836, 1284
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	2 cut(s)	471, 1030
BmrFI	CCNGG	2 cut(s)	836, 1284
BmsI	GCATC	5 cut(s)	231, 441, 628, 1047, 1567
BpmI	CTGGAG	1 cut(s)	956
Bpu1102I	GCTNAGC	1 cut(s)	334
Bsa29I	ATCGAT	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	538
BsaJI	CCNNGG	2 cut(s)	835, 1187
BsaWI	WCCGGW	1 cut(s)	1630
Bsc4I	CCNNNNNNNGG	1 cut(s)	787
Bse3DI	GCAATG	1 cut(s)	1304
BseBI	CCWGG	2 cut(s)	836, 1284
BseCI	ATCGAT	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	835, 1187
BseGI	GGATG	4 cut(s)	1185, 1473, 1558, 1639
BseLI	CCNNNNNNNGG	1 cut(s)	787
BseMI	GCAATG	1 cut(s)	1304
BseMII	CTCAG	3 cut(s)	348, 1236, 1266
BseXI	GCAGC	3 cut(s)	1016, 1342, 1388
BshFI	GGCC	3 cut(s)	402, 834, 1192
BshVI	ATCGAT	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	1631
BslFI	GGGAC	1 cut(s)	1374
BslI	CCNNNNNNNGG	1 cut(s)	787
BsmAI	GTCTC	2 cut(s)	719, 1104
BsmFI	GGGAC	1 cut(s)	1374
BsmI	GAATGC	6 cut(s)	34, 150, 298, 481, 969, 1323
BsnI	GGCC	3 cut(s)	402, 834, 1192
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	4 cut(s)	1131, 1360, 1572, 1660
Bsp1720I	GCTNAGC	1 cut(s)	334
BspACI	CCGC	7 cut(s)	148, 200, 446, 454, 533, 1382, 1392
BspANI	GGCC	3 cut(s)	402, 834, 1192
BspCNI	CTCAG	3 cut(s)	347, 1237, 1267
BspDI	ATCGAT	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	471, 1030
BspMAI	CTGCAG	1 cut(s)	1360
BsrDI	GCAATG	1 cut(s)	1304
BssECI	CCNNGG	2 cut(s)	835, 1187
BssMI	GATC	4 cut(s)	1131, 1360, 1572, 1660
BssNI	GRCGYC	1 cut(s)	538
Bst2UI	CCWGG	2 cut(s)	836, 1284
Bst4CI	ACNGT	2 cut(s)	70, 691
BstACI	GRCGYC	1 cut(s)	538
BstAPI	GCANNNNNTGC	2 cut(s)	1010, 1306
BstC8I	GCNNGC	3 cut(s)	522, 1302, 1410
BstDEI	CTNAG	5 cut(s)	334, 1245, 1275, 1601, 1657
BstF5I	GGATG	4 cut(s)	1185, 1473, 1558, 1639
BstKTI	GATC	4 cut(s)	1134, 1363, 1575, 1663
BstMAI	GTCTC	2 cut(s)	719, 1104
BstMBI	GATC	4 cut(s)	1131, 1360, 1572, 1660
BstMWI	GCNNNNNNNGC	3 cut(s)	530, 1010, 1306
BstNI	CCWGG	2 cut(s)	836, 1284
BstNSI	RCATGY	2 cut(s)	613, 1222
BstSCI	CCNGG	2 cut(s)	834, 1282
BstSFI	CTRYAG	1 cut(s)	1356
BstV1I	GCAGC	3 cut(s)	1016, 1342, 1388
Bsu15I	ATCGAT	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	402, 834, 1192
BsuTUI	ATCGAT	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	4 cut(s)	1185, 1473, 1558, 1639
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	3 cut(s)	522, 1302, 1410
Cfr13I	GGNCC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	166
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	6 cut(s)	4, 133, 613, 1073, 1289, 1628
CviQI	GTAC	6 cut(s)	4, 133, 613, 1073, 1289, 1628
DdeI	CTNAG	5 cut(s)	334, 1245, 1275, 1601, 1657
DpnI	GATC	4 cut(s)	1133, 1362, 1574, 1662
DpnII	GATC	4 cut(s)	1131, 1360, 1572, 1660
Eco147I	AGGCCT	1 cut(s)	834
Eco24I	GRGCYC	1 cut(s)	497
Eco57I	CTGAAG	4 cut(s)	303, 684, 750, 1449
EcoRI	GAATTC	1 cut(s)	991
EcoRII	CCWGG	2 cut(s)	834, 1282
EcoT22I	ATGCAT	3 cut(s)	246, 643, 1560
EcoT38I	GRGCYC	1 cut(s)	497
FalI	AAGNNNNNCTT	2 cut(s)	1293, 1325
FaqI	GGGAC	1 cut(s)	1374
FauI	CCCGC	4 cut(s)	141, 193, 526, 1399
FauNDI	CATATG	1 cut(s)	1399
Fnu4HI	GCNGC	3 cut(s)	1005, 1356, 1377
FokI	GGATG	4 cut(s)	1192, 1480, 1545, 1646
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	1005, 1356, 1377
FspBI	CTAG	1 cut(s)	1103
GluI	GCNGC	3 cut(s)	1005, 1356, 1377
GsuI	CTGGAG	1 cut(s)	956
HaeIII	GGCC	3 cut(s)	402, 834, 1192
HapII	CCGG	1 cut(s)	1631
HgaI	GACGC	1 cut(s)	527
Hin1I	GRCGYC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	1216
HindII	GTYRAC	1 cut(s)	1216
HinfI	GANTC	6 cut(s)	152, 656, 941, 1183, 1279, 1387
HpaII	CCGG	1 cut(s)	1631
HphI	GGTGA	1 cut(s)	1559
Hpy166II	GTNNAC	4 cut(s)	660, 957, 1216, 1289
Hpy188I	TCNGA	6 cut(s)	580, 1155, 1188, 1339, 1429, 1533
Hpy188III	TCNNGA	4 cut(s)	20, 513, 739, 1664
Hpy8I	GTNNAC	4 cut(s)	660, 957, 1216, 1289
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	7 cut(s)	430, 754, 1061, 1424, 1428, 1465, 1613
HpyCH4III	ACNGT	2 cut(s)	70, 691
HpyCH4IV	ACGT	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	530, 1010, 1306
HpyF3I	CTNAG	5 cut(s)	334, 1245, 1275, 1601, 1657
HpySE526I	ACGT	1 cut(s)	485
Hsp92I	GRCGYC	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	1131, 1360, 1572, 1660
LmnI	GCTCC	1 cut(s)	1034
Lsp1109I	GCAGC	3 cut(s)	1016, 1342, 1388
LweI	GCATC	5 cut(s)	231, 441, 628, 1047, 1567
MaeI	CTAG	1 cut(s)	1103
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	4 cut(s)	224, 481, 892, 1016
MalI	GATC	4 cut(s)	1133, 1362, 1574, 1662
MboI	GATC	4 cut(s)	1131, 1360, 1572, 1660
MboII	GAAGA	4 cut(s)	647, 677, 1181, 1416
MfeI	CAATTG	1 cut(s)	1043
MhlI	GDGCHC	1 cut(s)	497
MlyI	GAGTC	4 cut(s)	161, 665, 1192, 1396
MmeI	TCCRAC	1 cut(s)	1487
MnlI	CCTC	8 cut(s)	267, 360, 670, 931, 978, 1182, 1240, 1632
Mph1103I	ATGCAT	3 cut(s)	246, 643, 1560
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	4 cut(s)	36, 857, 1263, 1461
MslI	CAYNNNNRTG	2 cut(s)	962, 1023
MspI	CCGG	1 cut(s)	1631
MspR9I	CCNGG	2 cut(s)	836, 1284
MunI	CAATTG	1 cut(s)	1043
Mva1269I	GAATGC	6 cut(s)	34, 150, 298, 481, 969, 1323
MvaI	CCWGG	2 cut(s)	836, 1284
MwoI	GCNNNNNNNGC	3 cut(s)	530, 1010, 1306
NdeI	CATATG	1 cut(s)	1399
NdeII	GATC	4 cut(s)	1131, 1360, 1572, 1660
NlaIV	GGNNCC	2 cut(s)	471, 1030
NmuCI	GTSAC	2 cut(s)	481, 1016
NsiI	ATGCAT	3 cut(s)	246, 643, 1560
NspI	RCATGY	2 cut(s)	613, 1222
PceI	AGGCCT	1 cut(s)	834
PciI	ACATGT	2 cut(s)	609, 1218
PctI	GAATGC	6 cut(s)	34, 150, 298, 481, 969, 1323
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	941, 1279
PkrI	GCNGC	3 cut(s)	1006, 1357, 1378
PleI	GAGTC	4 cut(s)	160, 664, 1191, 1395
PpsI	GAGTC	4 cut(s)	160, 664, 1191, 1395
PscI	ACATGT	2 cut(s)	609, 1218
PsiI	TTATAA	2 cut(s)	882, 908
Psp6I	CCWGG	2 cut(s)	834, 1282
PspGI	CCWGG	2 cut(s)	834, 1282
PspN4I	GGNNCC	2 cut(s)	471, 1030
PspPI	GGNCC	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	1360
RsaI	GTAC	6 cut(s)	5, 134, 614, 1074, 1290, 1629
RsaNI	GTAC	6 cut(s)	4, 133, 613, 1073, 1289, 1628
RseI	CAYNNNNRTG	2 cut(s)	962, 1023
SaqAI	TTAA	4 cut(s)	36, 857, 1263, 1461
SatI	GCNGC	3 cut(s)	1005, 1356, 1377
Sau3AI	GATC	4 cut(s)	1131, 1360, 1572, 1660
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	4 cut(s)	161, 665, 1192, 1396
ScrFI	CCNGG	2 cut(s)	836, 1284
SduI	GDGCHC	1 cut(s)	497
SfaNI	GCATC	5 cut(s)	231, 441, 628, 1047, 1567
SfcI	CTRYAG	1 cut(s)	1356
SmiMI	CAYNNNNRTG	2 cut(s)	962, 1023
SseBI	AGGCCT	1 cut(s)	834
SsiI	CCGC	7 cut(s)	148, 200, 446, 454, 533, 1382, 1392
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	1 cut(s)	1103
StuI	AGGCCT	1 cut(s)	834
StyD4I	CCNGG	2 cut(s)	834, 1282
TaaI	ACNGT	2 cut(s)	70, 691
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	4 cut(s)	45, 166, 961, 1134
TatI	WGTACW	3 cut(s)	3, 612, 1288
TfiI	GAWTC	2 cut(s)	941, 1279
Tru1I	TTAA	4 cut(s)	36, 857, 1263, 1461
Tru9I	TTAA	4 cut(s)	36, 857, 1263, 1461
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	2 cut(s)	481, 1016
TseI	GCWGC	3 cut(s)	1004, 1355, 1376
Tsp45I	GTSAC	2 cut(s)	481, 1016
TspGWI	ACGGA	1 cut(s)	1035
TspRI	CASTG	1 cut(s)	667
XapI	RAATTY	4 cut(s)	543, 871, 991, 1255
XceI	RCATGY	2 cut(s)	613, 1222
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	1 cut(s)	1103
Zsp2I	ATGCAT	3 cut(s)	246, 643, 1560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.