Serine threonine-protein phosphatase 4 regulatory
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06670 AT3G06670 |
| fragaria_vesca | FvH4_4g19450 FvH4_4g19450 FvH4_4g19450 FvH4_4g19450 |
| malus_domestica | MD13G1156500.v1.1 MD16G1157400.v1.1 |
| prunus_persica | Prupe.1G122300_v2.0.a1 Prupe.1G122300_v2.0.a1 |
| pyrus_communis | pycom13g13390 pycom16g13230 |
| rosa_chinensis | RchiOBHm_Chr4g0424501 |
| rosa_laevigata | RLG00000007468 |
| rosa_multiflora | Rmu_sc0002603.1_g000008 Rmu_sc0003942.1_g000025 |
| rosa_roxburghii | Rroxscaffold_5G00366430 |
| rosa_rugosa | Rorug04G0198000 |
| rosa_samantha | Rh4AG254400 Rh4BG259800 Rh4CG270900 Rh4DG254200 |
| rosa_wichuraiana | Rw4G021970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 2050 |
| AccBSI | CCGCTC | 2 cut(s) | 1951, 2249 |
| AccII | CGCG | 1 cut(s) | 2185 |
| AccIII | TCCGGA | 2 cut(s) | 10, 513 |
| AciI | CCGC | 6 cut(s) | 1922, 1951, 2183, 2185, 2247, 2382 |
| AclWI | GGATC | 8 cut(s) | 321, 507, 677, 758, 1761, 1922, 2395, 2586 |
| AcsI | RAATTY | 5 cut(s) | 337, 715, 865, 985, 1007 |
| AcuI | CTGAAG | 6 cut(s) | 153, 458, 743, 929, 1452, 1485 |
| AfaI | GTAC | 5 cut(s) | 797, 837, 1297, 1627, 1727 |
| AfeI | AGCGCT | 1 cut(s) | 257 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1036, 1223, 1237, 2126, 2291 |
| AjnI | CCWGG | 6 cut(s) | 685, 1032, 1230, 1520, 1857, 2374 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1897, 1929 |
| Alw21I | GWGCWC | 4 cut(s) | 302, 1333, 1767, 2226 |
| Alw26I | GTCTC | 5 cut(s) | 24, 167, 240, 281, 1232 |
| AlwI | GGATC | 8 cut(s) | 321, 507, 677, 758, 1761, 1922, 2395, 2586 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1048, 2015 |
| Aor13HI | TCCGGA | 2 cut(s) | 10, 513 |
| Aor51HI | AGCGCT | 1 cut(s) | 257 |
| AoxI | GGCC | 3 cut(s) | 565, 1830, 2377 |
| ApeKI | GCWGC | 8 cut(s) | 1042, 1045, 1048, 1439, 1607, 2096, 2393, 2454 |
| ApoI | RAATTY | 5 cut(s) | 337, 715, 865, 985, 1007 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1304, 1336 |
| AseI | ATTAAT | 1 cut(s) | 1071 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 369 |
| AspLEI | GCGC | 3 cut(s) | 8, 258, 477 |
| AspS9I | GGNCC | 5 cut(s) | 1063, 1822, 1831, 1901, 2378 |
| AsuC2I | CCSGG | 2 cut(s) | 1723, 2398 |
| AsuHPI | GGTGA | 3 cut(s) | 701, 1271, 2562 |
| AsuII | TTCGAA | 1 cut(s) | 2303 |
| AvaII | GGWCC | 3 cut(s) | 1063, 1822, 1901 |
| AxyI | CCTNAGG | 2 cut(s) | 201, 2228 |
| BaeGI | GKGCMC | 1 cut(s) | 105 |
| BamHI | GGATCC | 1 cut(s) | 2591 |
| BanII | GRGCYC | 2 cut(s) | 1333, 2226 |
| BbsI | GAAGAC | 5 cut(s) | 231, 1257, 1696, 1995, 2172 |
| Bbv12I | GWGCWC | 4 cut(s) | 302, 1333, 1767, 2226 |
| BbvCI | CCTCAGC | 1 cut(s) | 2421 |
| BbvI | GCAGC | 8 cut(s) | 1035, 1054, 1057, 1426, 1594, 2083, 2405, 2466 |
| BccI | CCATC | 7 cut(s) | 68, 200, 517, 557, 1240, 1862, 2480 |
| BceAI | ACGGC | 2 cut(s) | 2257, 2303 |
| BciT130I | CCWGG | 6 cut(s) | 687, 1034, 1232, 1522, 1859, 2376 |
| BcnI | CCSGG | 2 cut(s) | 1723, 2398 |
| BcoDI | GTCTC | 5 cut(s) | 24, 167, 240, 281, 1232 |
| BfaI | CTAG | 5 cut(s) | 831, 839, 1283, 1304, 1598 |
| BfmI | CTRYAG | 3 cut(s) | 291, 408, 1743 |
| BfoI | RGCGCY | 2 cut(s) | 9, 259 |
| BfuAI | ACCTGC | 1 cut(s) | 2050 |
| BglII | AGATCT | 1 cut(s) | 621 |
| BisI | GCNGC | 8 cut(s) | 1043, 1046, 1049, 1440, 1608, 2097, 2394, 2455 |
| BlsI | GCNGC | 8 cut(s) | 1044, 1047, 1050, 1441, 1609, 2098, 2395, 2456 |
| BmcAI | AGTACT | 1 cut(s) | 837 |
| Bme1390I | CCNGG | 8 cut(s) | 687, 1034, 1232, 1522, 1723, 1859, 2376, 2398 |
| Bme18I | GGWCC | 3 cut(s) | 1063, 1822, 1901 |
| BmgT120I | GGNCC | 5 cut(s) | 1063, 1822, 1831, 1901, 2378 |
| BmiI | GGNNCC | 6 cut(s) | 1064, 1720, 1823, 1833, 2380, 2593 |
| BmrFI | CCNGG | 8 cut(s) | 687, 1034, 1232, 1522, 1723, 1859, 2376, 2398 |
| BmrI | ACTGGG | 2 cut(s) | 108, 1146 |
| BmuI | ACTGGG | 2 cut(s) | 108, 1146 |
| BpiI | GAAGAC | 5 cut(s) | 231, 1257, 1696, 1995, 2172 |
| BpmI | CTGGAG | 2 cut(s) | 1016, 2148 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2070, 2421 |
| Bpu14I | TTCGAA | 1 cut(s) | 2303 |
| BpuEI | CTTGAG | 2 cut(s) | 1152, 1781 |
| BpuMI | CCSGG | 2 cut(s) | 1723, 2398 |
| BsaAI | YACGTR | 2 cut(s) | 106, 1666 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2472 |
| BsaI | GGTCTC | 2 cut(s) | 240, 1232 |
| BsaJI | CCNNGG | 4 cut(s) | 1222, 2120, 2183, 2285 |
| BsaWI | WCCGGW | 3 cut(s) | 10, 513, 711 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2121, 2151 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1036, 1223, 1237, 2126, 2291 |
| Bse1I | ACTGG | 3 cut(s) | 103, 1141, 1825 |
| Bse21I | CCTNAGG | 2 cut(s) | 201, 2228 |
| Bse3DI | GCAATG | 2 cut(s) | 902, 1707 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2472 |
| BseAI | TCCGGA | 2 cut(s) | 10, 513 |
| BseBI | CCWGG | 6 cut(s) | 687, 1034, 1232, 1522, 1859, 2376 |
| BseDI | CCNNGG | 4 cut(s) | 1222, 2120, 2183, 2285 |
| BseGI | GGATG | 9 cut(s) | 91, 187, 674, 823, 1393, 1517, 1854, 2215, 2488 |
| BseJI | GATNNNNATC | 1 cut(s) | 2472 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1036, 1223, 1237, 2126, 2291 |
| BseMI | GCAATG | 2 cut(s) | 902, 1707 |
| BseNI | ACTGG | 3 cut(s) | 103, 1141, 1825 |
| BseRI | GAGGAG | 3 cut(s) | 1211, 1622, 2169 |
| BseSI | GKGCMC | 1 cut(s) | 105 |
| BseXI | GCAGC | 8 cut(s) | 1035, 1054, 1057, 1426, 1594, 2083, 2405, 2466 |
| BseYI | CCCAGC | 1 cut(s) | 2290 |
| BsgI | GTGCAG | 2 cut(s) | 307, 1061 |
| Bsh1236I | CGCG | 1 cut(s) | 2185 |
| BshFI | GGCC | 3 cut(s) | 567, 1832, 2379 |
| BsiHKAI | GWGCWC | 4 cut(s) | 302, 1333, 1767, 2226 |
| BsiSI | CCGG | 6 cut(s) | 11, 514, 712, 1723, 1899, 2398 |
| BslFI | GGGAC | 3 cut(s) | 1076, 1153, 1835 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1036, 1223, 1237, 2126, 2291 |
| BsmAI | GTCTC | 5 cut(s) | 24, 167, 240, 281, 1232 |
| BsmBI | CGTCTC | 1 cut(s) | 167 |
| BsmFI | GGGAC | 3 cut(s) | 1076, 1153, 1835 |
| BsnI | GGCC | 3 cut(s) | 567, 1832, 2379 |
| Bso31I | GGTCTC | 2 cut(s) | 240, 1232 |
| Bsp119I | TTCGAA | 1 cut(s) | 2303 |
| Bsp1286I | GDGCHC | 5 cut(s) | 105, 302, 1333, 1767, 2226 |
| Bsp13I | TCCGGA | 2 cut(s) | 10, 513 |
| BspACI | CCGC | 6 cut(s) | 1922, 1951, 2183, 2185, 2247, 2382 |
| BspANI | GGCC | 3 cut(s) | 567, 1832, 2379 |
| BspEI | TCCGGA | 2 cut(s) | 10, 513 |
| BspFNI | CGCG | 1 cut(s) | 2185 |
| BspHI | TCATGA | 1 cut(s) | 502 |
| BspLI | GGNNCC | 6 cut(s) | 1064, 1720, 1823, 1833, 2380, 2593 |
| BspMAI | CTGCAG | 2 cut(s) | 295, 1747 |
| BspMI | ACCTGC | 1 cut(s) | 2050 |
| BspPI | GGATC | 8 cut(s) | 321, 507, 677, 758, 1761, 1922, 2395, 2586 |
| BspT104I | TTCGAA | 1 cut(s) | 2303 |
| BspTNI | GGTCTC | 2 cut(s) | 240, 1232 |
| BsrBI | CCGCTC | 2 cut(s) | 1951, 2249 |
| BsrDI | GCAATG | 2 cut(s) | 902, 1707 |
| BsrI | ACTGG | 3 cut(s) | 103, 1141, 1825 |
| BssECI | CCNNGG | 4 cut(s) | 1222, 2120, 2183, 2285 |
| Bst2UI | CCWGG | 6 cut(s) | 687, 1034, 1232, 1522, 1859, 2376 |
| Bst4CI | ACNGT | 3 cut(s) | 386, 614, 1884 |
| Bst6I | CTCTTC | 3 cut(s) | 429, 1933, 2436 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1048 |
| BstBAI | YACGTR | 2 cut(s) | 106, 1666 |
| BstBI | TTCGAA | 1 cut(s) | 2303 |
| BstC8I | GCNNGC | 3 cut(s) | 1953, 2101, 2222 |
| BstDSI | CCRYGG | 2 cut(s) | 2183, 2285 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1235 |
| BstF5I | GGATG | 9 cut(s) | 91, 187, 674, 823, 1393, 1517, 1854, 2215, 2488 |
| BstFNI | CGCG | 1 cut(s) | 2185 |
| BstH2I | RGCGCY | 2 cut(s) | 9, 259 |
| BstHHI | GCGC | 3 cut(s) | 8, 258, 477 |
| BstMAI | GTCTC | 5 cut(s) | 24, 167, 240, 281, 1232 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 854, 887, 1048, 1337, 2191, 2230, 2390, 2417 |
| BstNI | CCWGG | 6 cut(s) | 687, 1034, 1232, 1522, 1859, 2376 |
| BstNSI | RCATGY | 1 cut(s) | 734 |
| BstSCI | CCNGG | 8 cut(s) | 685, 1032, 1230, 1520, 1721, 1857, 2374, 2396 |
| BstSFI | CTRYAG | 3 cut(s) | 291, 408, 1743 |
| BstSLI | GKGCMC | 1 cut(s) | 105 |
| BstUI | CGCG | 1 cut(s) | 2185 |
| BstV1I | GCAGC | 8 cut(s) | 1035, 1054, 1057, 1426, 1594, 2083, 2405, 2466 |
| BstV2I | GAAGAC | 5 cut(s) | 231, 1257, 1696, 1995, 2172 |
| BstX2I | RGATCY | 4 cut(s) | 621, 763, 1753, 2591 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2092 |
| BstYI | RGATCY | 4 cut(s) | 621, 763, 1753, 2591 |
| Bsu36I | CCTNAGG | 2 cut(s) | 201, 2228 |
| BsuRI | GGCC | 3 cut(s) | 567, 1832, 2379 |
| BtgI | CCRYGG | 2 cut(s) | 2183, 2285 |
| BtgZI | GCGATG | 1 cut(s) | 2010 |
| BtsCI | GGATG | 9 cut(s) | 91, 187, 674, 823, 1393, 1517, 1854, 2215, 2488 |
| BtsI | GCAGTG | 2 cut(s) | 1270, 2358 |
| BtsIMutI | CAGTG | 6 cut(s) | 391, 1270, 1847, 1889, 2339, 2358 |
| BveI | ACCTGC | 1 cut(s) | 2050 |
| Cac8I | GCNNGC | 3 cut(s) | 1953, 2101, 2222 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1048, 2015 |
| CciI | TCATGA | 1 cut(s) | 502 |
| CfoI | GCGC | 3 cut(s) | 8, 258, 477 |
| Cfr13I | GGNCC | 5 cut(s) | 1063, 1822, 1831, 1901, 2378 |
| Cfr42I | CCGCGG | 1 cut(s) | 2186 |
| Csp6I | GTAC | 5 cut(s) | 796, 836, 1296, 1626, 1726 |
| CviQI | GTAC | 5 cut(s) | 796, 836, 1296, 1626, 1726 |
| DraI | TTTAAA | 1 cut(s) | 535 |
| Eam1104I | CTCTTC | 3 cut(s) | 429, 1933, 2436 |
| EarI | CTCTTC | 3 cut(s) | 429, 1933, 2436 |
| Ecl136II | GAGCTC | 2 cut(s) | 1331, 2224 |
| Eco24I | GRGCYC | 2 cut(s) | 1333, 2226 |
| Eco31I | GGTCTC | 2 cut(s) | 240, 1232 |
| Eco32I | GATATC | 1 cut(s) | 1147 |
| Eco47I | GGWCC | 3 cut(s) | 1063, 1822, 1901 |
| Eco47III | AGCGCT | 1 cut(s) | 257 |
| Eco53kI | GAGCTC | 2 cut(s) | 1331, 2224 |
| Eco57I | CTGAAG | 6 cut(s) | 153, 458, 743, 929, 1452, 1485 |
| Eco81I | CCTNAGG | 2 cut(s) | 201, 2228 |
| EcoICRI | GAGCTC | 2 cut(s) | 1331, 2224 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1235 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1063, 2378 |
| EcoRI | GAATTC | 1 cut(s) | 865 |
| EcoRII | CCWGG | 6 cut(s) | 685, 1032, 1230, 1520, 1857, 2374 |
| EcoRV | GATATC | 1 cut(s) | 1147 |
| EcoT22I | ATGCAT | 2 cut(s) | 1318, 1519 |
| EcoT38I | GRGCYC | 2 cut(s) | 1333, 2226 |
| Esp3I | CGTCTC | 1 cut(s) | 167 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2092, 2124 |
| FaqI | GGGAC | 3 cut(s) | 1076, 1153, 1835 |
| FauI | CCCGC | 2 cut(s) | 1944, 2389 |
| FauNDI | CATATG | 1 cut(s) | 1481 |
| Fnu4HI | GCNGC | 8 cut(s) | 1043, 1046, 1049, 1440, 1608, 2097, 2394, 2455 |
| FokI | GGATG | 9 cut(s) | 98, 174, 681, 830, 1400, 1504, 1841, 2222, 2495 |
| FriOI | GRGCYC | 2 cut(s) | 1333, 2226 |
| Fsp4HI | GCNGC | 8 cut(s) | 1043, 1046, 1049, 1440, 1608, 2097, 2394, 2455 |
| FspBI | CTAG | 5 cut(s) | 831, 839, 1283, 1304, 1598 |
| GlaI | GCGC | 3 cut(s) | 7, 257, 476 |
| GluI | GCNGC | 8 cut(s) | 1043, 1046, 1049, 1440, 1608, 2097, 2394, 2455 |
| GsaI | CCCAGC | 1 cut(s) | 2294 |
| GsuI | CTGGAG | 2 cut(s) | 1016, 2148 |
| HaeII | RGCGCY | 2 cut(s) | 9, 259 |
| HaeIII | GGCC | 3 cut(s) | 567, 1832, 2379 |
| HapII | CCGG | 6 cut(s) | 11, 514, 712, 1723, 1899, 2398 |
| HhaI | GCGC | 3 cut(s) | 8, 258, 477 |
| Hin6I | GCGC | 3 cut(s) | 6, 256, 475 |
| HinP1I | GCGC | 3 cut(s) | 6, 256, 475 |
| HincII | GTYRAC | 1 cut(s) | 1945 |
| HindII | GTYRAC | 1 cut(s) | 1945 |
| HindIII | AAGCTT | 1 cut(s) | 277 |
| HpaII | CCGG | 6 cut(s) | 11, 514, 712, 1723, 1899, 2398 |
| HphI | GGTGA | 3 cut(s) | 701, 1271, 2562 |
| Hpy166II | GTNNAC | 1 cut(s) | 1945 |
| Hpy8I | GTNNAC | 1 cut(s) | 1945 |
| HpyCH4III | ACNGT | 3 cut(s) | 386, 614, 1884 |
| HpyCH4IV | ACGT | 6 cut(s) | 105, 176, 794, 1186, 1665, 1814 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 854, 887, 1048, 1337, 2191, 2230, 2390, 2417 |
| HpySE526I | ACGT | 6 cut(s) | 105, 176, 794, 1186, 1665, 1814 |
| HspAI | GCGC | 3 cut(s) | 6, 256, 475 |
| Kpn2I | TCCGGA | 2 cut(s) | 10, 513 |
| KspI | CCGCGG | 1 cut(s) | 2186 |
| LmnI | GCTCC | 8 cut(s) | 13, 124, 397, 727, 1328, 2229, 2417, 2563 |
| Lsp1109I | GCAGC | 8 cut(s) | 1035, 1054, 1057, 1426, 1594, 2083, 2405, 2466 |
| MaeI | CTAG | 5 cut(s) | 831, 839, 1283, 1304, 1598 |
| MaeII | ACGT | 6 cut(s) | 105, 176, 794, 1186, 1665, 1814 |
| MaeIII | GTNAC | 4 cut(s) | 177, 445, 806, 1552 |
| MbiI | CCGCTC | 2 cut(s) | 1951, 2249 |
| MflI | RGATCY | 4 cut(s) | 621, 763, 1753, 2591 |
| MhlI | GDGCHC | 5 cut(s) | 105, 302, 1333, 1767, 2226 |
| MlyI | GAGTC | 1 cut(s) | 1159 |
| Mph1103I | ATGCAT | 2 cut(s) | 1318, 1519 |
| MroI | TCCGGA | 2 cut(s) | 10, 513 |
| MroXI | GAANNNNTTC | 1 cut(s) | 369 |
| MseI | TTAA | 8 cut(s) | 275, 534, 609, 741, 1019, 1071, 1671, 1872 |
| MslI | CAYNNNNRTG | 3 cut(s) | 66, 1840, 2481 |
| MspA1I | CMGCKG | 3 cut(s) | 1048, 2185, 2384 |
| MspI | CCGG | 6 cut(s) | 11, 514, 712, 1723, 1899, 2398 |
| MspR9I | CCNGG | 8 cut(s) | 687, 1034, 1232, 1522, 1723, 1859, 2376, 2398 |
| MvaI | CCWGG | 6 cut(s) | 687, 1034, 1232, 1522, 1859, 2376 |
| MvnI | CGCG | 1 cut(s) | 2185 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 854, 887, 1048, 1337, 2191, 2230, 2390, 2417 |
| NciI | CCSGG | 2 cut(s) | 1723, 2398 |
| NdeI | CATATG | 1 cut(s) | 1481 |
| NlaIV | GGNNCC | 6 cut(s) | 1064, 1720, 1823, 1833, 2380, 2593 |
| NmuCI | GTSAC | 1 cut(s) | 1552 |
| NsiI | ATGCAT | 2 cut(s) | 1318, 1519 |
| NspI | RCATGY | 1 cut(s) | 734 |
| NspV | TTCGAA | 1 cut(s) | 2303 |
| PagI | TCATGA | 1 cut(s) | 502 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 111, 1621 |
| PdmI | GAANNNNTTC | 1 cut(s) | 369 |
| PfeI | GAWTC | 9 cut(s) | 517, 597, 974, 1111, 1153, 2006, 2426, 2473, 2543 |
| PfoI | TCCNGGA | 1 cut(s) | 1520 |
| PkrI | GCNGC | 8 cut(s) | 1044, 1047, 1050, 1441, 1609, 2098, 2395, 2456 |
| PleI | GAGTC | 1 cut(s) | 1159 |
| PpsI | GAGTC | 1 cut(s) | 1159 |
| Ppu21I | YACGTR | 2 cut(s) | 106, 1666 |
| PpuMI | RGGWCCY | 1 cut(s) | 1063 |
| PshBI | ATTAAT | 1 cut(s) | 1071 |
| Psp124BI | GAGCTC | 2 cut(s) | 1333, 2226 |
| Psp5II | RGGWCCY | 1 cut(s) | 1063 |
| Psp6I | CCWGG | 6 cut(s) | 685, 1032, 1230, 1520, 1857, 2374 |
| PspFI | CCCAGC | 1 cut(s) | 2290 |
| PspGI | CCWGG | 6 cut(s) | 685, 1032, 1230, 1520, 1857, 2374 |
| PspN4I | GGNNCC | 6 cut(s) | 1064, 1720, 1823, 1833, 2380, 2593 |
| PspPI | GGNCC | 5 cut(s) | 1063, 1822, 1831, 1901, 2378 |
| PspPPI | RGGWCCY | 1 cut(s) | 1063 |
| PstI | CTGCAG | 2 cut(s) | 295, 1747 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1048, 2015 |
| PsuI | RGATCY | 4 cut(s) | 621, 763, 1753, 2591 |
| PvuII | CAGCTG | 1 cut(s) | 1048 |
| RsaI | GTAC | 5 cut(s) | 797, 837, 1297, 1627, 1727 |
| RsaNI | GTAC | 5 cut(s) | 796, 836, 1296, 1626, 1726 |
| RseI | CAYNNNNRTG | 3 cut(s) | 66, 1840, 2481 |
| SacI | GAGCTC | 2 cut(s) | 1333, 2226 |
| SacII | CCGCGG | 1 cut(s) | 2186 |
| SaqAI | TTAA | 8 cut(s) | 275, 534, 609, 741, 1019, 1071, 1671, 1872 |
| SatI | GCNGC | 8 cut(s) | 1043, 1046, 1049, 1440, 1608, 2097, 2394, 2455 |
| Sau96I | GGNCC | 5 cut(s) | 1063, 1822, 1831, 1901, 2378 |
| ScaI | AGTACT | 1 cut(s) | 837 |
| SchI | GAGTC | 1 cut(s) | 1159 |
| ScrFI | CCNGG | 8 cut(s) | 687, 1034, 1232, 1522, 1723, 1859, 2376, 2398 |
| SduI | GDGCHC | 5 cut(s) | 105, 302, 1333, 1767, 2226 |
| SfcI | CTRYAG | 3 cut(s) | 291, 408, 1743 |
| Sfr303I | CCGCGG | 1 cut(s) | 2186 |
| SfuI | TTCGAA | 1 cut(s) | 2303 |
| SgrBI | CCGCGG | 1 cut(s) | 2186 |
| SinI | GGWCC | 3 cut(s) | 1063, 1822, 1901 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 66, 1840, 2481 |
| SmlI | CTYRAG | 2 cut(s) | 1167, 1760 |
| SmoI | CTYRAG | 2 cut(s) | 1167, 1760 |
| SsiI | CCGC | 6 cut(s) | 1922, 1951, 2183, 2185, 2247, 2382 |
| SspI | AATATT | 1 cut(s) | 636 |
| SspMI | CTAG | 5 cut(s) | 831, 839, 1283, 1304, 1598 |
| SstI | GAGCTC | 2 cut(s) | 1333, 2226 |
| StyD4I | CCNGG | 8 cut(s) | 685, 1032, 1230, 1520, 1721, 1857, 2374, 2396 |
| TaaI | ACNGT | 3 cut(s) | 386, 614, 1884 |
| TaiI | ACGT | 6 cut(s) | 108, 179, 797, 1189, 1668, 1817 |
| TaqI | TCGA | 7 cut(s) | 38, 91, 114, 1418, 2303, 2336, 2495 |
| TaqII | GACCGA | 1 cut(s) | 1214 |
| TatI | WGTACW | 1 cut(s) | 835 |
| TfiI | GAWTC | 9 cut(s) | 517, 597, 974, 1111, 1153, 2006, 2426, 2473, 2543 |
| Tru1I | TTAA | 8 cut(s) | 275, 534, 609, 741, 1019, 1071, 1671, 1872 |
| Tru9I | TTAA | 8 cut(s) | 275, 534, 609, 741, 1019, 1071, 1671, 1872 |
| TscAI | CASTG | 6 cut(s) | 391, 1277, 1847, 1889, 2346, 2358 |
| TseFI | GTSAC | 1 cut(s) | 1552 |
| TseI | GCWGC | 8 cut(s) | 1042, 1045, 1048, 1439, 1607, 2096, 2393, 2454 |
| Tsp45I | GTSAC | 1 cut(s) | 1552 |
| TspGWI | ACGGA | 3 cut(s) | 1283, 1594, 1613 |
| TspRI | CASTG | 6 cut(s) | 391, 1277, 1847, 1889, 2346, 2358 |
| VpaK11BI | GGWCC | 3 cut(s) | 1063, 1822, 1901 |
| VspI | ATTAAT | 1 cut(s) | 1071 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1235 |
| XapI | RAATTY | 5 cut(s) | 337, 715, 865, 985, 1007 |
| XbaI | TCTAGA | 1 cut(s) | 1282 |
| XceI | RCATGY | 1 cut(s) | 734 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 985 |
| XmnI | GAANNNNTTC | 1 cut(s) | 369 |
| XspI | CTAG | 5 cut(s) | 831, 839, 1283, 1304, 1598 |
| ZrmI | AGTACT | 1 cut(s) | 837 |
| Zsp2I | ATGCAT | 2 cut(s) | 1318, 1519 |