Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003942.1

Orthogroup ID

OG0008808

Physical Location & Seq

Genomic Coordinates Reverse (-)

92378 .. 93702

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003942.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ctgataaatcatattgtgaggaacaaccttctcaaaccaattatcgatgcatttgttggtaatggcaatcgatataacctgctaaactcagctgttttggaactttttgagtacatccggaaggaaaatctgaaatctttggttaaatacttggttgattcattctggattcagttggtcaaatttgagtatttgtcgtccgttcactctctaaaagttaaacatgagcagttcctagaaagttttggaacgaaaggaaccgttaatgtgtcggacaatagaaaacgaggtgatgagcgtgctttggagaaagaagaagaagactattttaatgaggacagtgatgaagaagacacagcatctgcatccatgtcaaatacccaaaaagtacagacacaacctcaagctgttttatccaatggagttgctgcaagccaaccaccatccaggtctgttgggctggtagactatgatgacgatgaggatgacgaagactacaagccaccgcccaagaagcagcctgatacttctgaggaagatgaaggaacaatggagtcccttaagttgaagaggaaattggcttctaaggatagggagcctgagctaacaaagaggcaacggttgggtaaaaacccaaagccaaaagaaagtgttttggctgctttttgtacaaatctaaacccgtcggtgctaccaaataagaaagctgcaatcagtatgcattctagtcgaacagctgatggggttaagaactcagatgatgtttctctagagaatgatagtgctgcttctagaagctgttccaataacaacagttcagatgaggaggatcgtaaggagaatgagcctgctagttctagaggctcctctgattgcttgcatggcactctggagaatagacagttgggcgcagaggactgcccgttgataccaccgaaatcctcaccggaaatggctgtaaatgggtcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04212 ko04922 map04212 map04922

Pfam Domains

Protein Families

SMK-1

Protein Analysis

323

Amino Acids

35.92

Weight (kDa)

5.0

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06670 AT3G06670
fragaria_vesca	FvH4_4g19450 FvH4_4g19450 FvH4_4g19450 FvH4_4g19450
malus_domestica	MD13G1156500.v1.1 MD16G1157400.v1.1
prunus_persica	Prupe.1G122300_v2.0.a1 Prupe.1G122300_v2.0.a1
pyrus_communis	pycom13g13390 pycom16g13230
rosa_chinensis	RchiOBHm_Chr4g0424501
rosa_laevigata	RLG00000007468
rosa_multiflora	Rmu_sc0002603.1_g000008 Rmu_sc0003942.1_g000025
rosa_roxburghii	Rroxscaffold_5G00366430
rosa_rugosa	Rorug04G0198000
rosa_samantha	Rh4AG254400 Rh4BG259800 Rh4CG270900 Rh4DG254200
rosa_wichuraiana	Rw4G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	465
AccIII	TCCGGA	1 cut(s)	117
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	1 cut(s)	837
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	3 cut(s)	113, 390, 670
AflII	CTTAAG	1 cut(s)	560
AgsI	TTSAA	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	446
AjuI	GAANNNNNNNTTGG	4 cut(s)	560, 592, 887, 919
AluBI	AGCT	6 cut(s)	92, 407, 604, 707, 737, 798
AluI	AGCT	6 cut(s)	92, 407, 604, 707, 737, 798
AlwI	GGATC	1 cut(s)	837
AlwNI	CAGNNNCTG	1 cut(s)	362
Aor13HI	TCCGGA	1 cut(s)	117
ApeKI	GCWGC	5 cut(s)	428, 517, 659, 707, 785
ApoI	RAATTY	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	799
AspLEI	GCGC	1 cut(s)	911
AsuHPI	GGTGA	2 cut(s)	302, 936
BbsI	GAAGAC	3 cut(s)	327, 357, 498
BbvI	GCAGC	5 cut(s)	415, 529, 646, 694, 772
BccI	CCATC	2 cut(s)	451, 734
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	1 cut(s)	448
BfaI	CTAG	6 cut(s)	236, 726, 770, 792, 852, 858
BfrI	CTTAAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	87
BisI	GCNGC	5 cut(s)	429, 518, 660, 708, 786
BlsI	GCNGC	5 cut(s)	430, 519, 661, 709, 787
Bme1390I	CCNGG	1 cut(s)	448
BmiI	GGNNCC	3 cut(s)	259, 597, 865
BmrFI	CCNGG	1 cut(s)	448
BmsI	GCATC	3 cut(s)	37, 368, 374
BpiI	GAAGAC	3 cut(s)	327, 357, 498
BpmI	CTGGAG	1 cut(s)	911
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	387
Bsa29I	ATCGAT	2 cut(s)	45, 70
BsaWI	WCCGGW	2 cut(s)	117, 946
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	448
BseCI	ATCGAT	2 cut(s)	45, 70
BseGI	GGATG	4 cut(s)	114, 365, 443, 490
BseMII	CTCAG	4 cut(s)	102, 522, 591, 768
BseRI	GAGGAG	2 cut(s)	839, 856
BseXI	GCAGC	5 cut(s)	415, 529, 646, 694, 772
BshVI	ATCGAT	2 cut(s)	45, 70
BsiSI	CCGG	2 cut(s)	118, 947
BslFI	GGGAC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	721
Bsp13I	TCCGGA	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	668
Bsp143I	GATC	1 cut(s)	829
BspACI	CCGC	1 cut(s)	506
BspCNI	CTCAG	4 cut(s)	101, 523, 592, 767
BspDI	ATCGAT	2 cut(s)	45, 70
BspEI	TCCGGA	1 cut(s)	117
BspLI	GGNNCC	3 cut(s)	259, 597, 865
BspMI	ACCTGC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	837
BspTI	CTTAAG	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	668
BssMI	GATC	1 cut(s)	829
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	5 cut(s)	262, 341, 621, 815, 903
Bst6I	CTCTTC	1 cut(s)	563
BstAFI	CTTAAG	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	668
BstC8I	GCNNGC	4 cut(s)	300, 433, 849, 878
BstDEI	CTNAG	5 cut(s)	88, 531, 585, 600, 754
BstF5I	GGATG	4 cut(s)	114, 365, 443, 490
BstHHI	GCGC	1 cut(s)	911
BstKTI	GATC	1 cut(s)	832
BstMBI	GATC	1 cut(s)	829
BstMWI	GCNNNNNNNGC	2 cut(s)	514, 882
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	446
BstV1I	GCAGC	5 cut(s)	415, 529, 646, 694, 772
BstV2I	GAAGAC	3 cut(s)	327, 357, 498
Bsu15I	ATCGAT	2 cut(s)	45, 70
BsuTUI	ATCGAT	2 cut(s)	45, 70
BtsCI	GGATG	4 cut(s)	114, 365, 443, 490
BtsIMutI	CAGTG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	87
Cac8I	GCNNGC	4 cut(s)	300, 433, 849, 878
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	911
ClaI	ATCGAT	2 cut(s)	45, 70
Csp6I	GTAC	3 cut(s)	112, 389, 669
CviAII	CATG	3 cut(s)	224, 370, 881
CviQI	GTAC	3 cut(s)	112, 389, 669
DdeI	CTNAG	5 cut(s)	88, 531, 585, 600, 754
DpnI	GATC	1 cut(s)	831
DpnII	GATC	1 cut(s)	829
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	446
EcoT22I	ATGCAT	2 cut(s)	52, 723
FaeI	CATG	3 cut(s)	227, 373, 884
FaiI	YATR	7 cut(s)	12, 75, 225, 371, 471, 719, 882
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	3 cut(s)	223, 369, 880
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	5 cut(s)	429, 518, 660, 708, 786
FokI	GGATG	4 cut(s)	101, 352, 430, 497
Fsp4HI	GCNGC	5 cut(s)	429, 518, 660, 708, 786
FspBI	CTAG	6 cut(s)	236, 726, 770, 792, 852, 858
GlaI	GCGC	1 cut(s)	910
GluI	GCNGC	5 cut(s)	429, 518, 660, 708, 786
GsuI	CTGGAG	1 cut(s)	911
HapII	CCGG	2 cut(s)	118, 947
HhaI	GCGC	1 cut(s)	911
Hin1II	CATG	3 cut(s)	227, 373, 884
Hin6I	GCGC	1 cut(s)	909
HinP1I	GCGC	1 cut(s)	909
HinfI	GANTC	3 cut(s)	158, 169, 554
HpaII	CCGG	2 cut(s)	118, 947
HphI	GGTGA	2 cut(s)	302, 936
Hpy166II	GTNNAC	2 cut(s)	205, 466
Hpy188I	TCNGA	6 cut(s)	132, 274, 532, 757, 820, 871
Hpy188III	TCNNGA	6 cut(s)	118, 166, 770, 792, 858, 890
Hpy8I	GTNNAC	2 cut(s)	205, 466
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	3 cut(s)	38, 115, 536
HpyCH4III	ACNGT	5 cut(s)	262, 341, 621, 815, 903
HpyCH4V	TGCA	6 cut(s)	50, 365, 431, 710, 721, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	514, 882
HpyF3I	CTNAG	5 cut(s)	88, 531, 585, 600, 754
Hsp92II	CATG	3 cut(s)	227, 373, 884
HspAI	GCGC	1 cut(s)	909
Kpn2I	TCCGGA	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	829
LmnI	GCTCC	2 cut(s)	595, 869
Lsp1109I	GCAGC	5 cut(s)	415, 529, 646, 694, 772
LweI	GCATC	3 cut(s)	37, 368, 374
MaeI	CTAG	6 cut(s)	236, 726, 770, 792, 852, 858
MalI	GATC	1 cut(s)	831
MboI	GATC	1 cut(s)	829
MboII	GAAGA	8 cut(s)	326, 329, 332, 359, 362, 503, 548, 580
MluCI	AATT	3 cut(s)	39, 182, 575
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	252
Mph1103I	ATGCAT	2 cut(s)	52, 723
MroI	TCCGGA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	799
MseI	TTAA	6 cut(s)	144, 219, 264, 330, 561, 747
MspA1I	CMGCKG	2 cut(s)	92, 737
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	2 cut(s)	118, 947
MspR9I	CCNGG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	2 cut(s)	514, 882
NdeII	GATC	1 cut(s)	829
NlaIII	CATG	3 cut(s)	227, 373, 884
NlaIV	GGNNCC	3 cut(s)	259, 597, 865
NsiI	ATGCAT	2 cut(s)	52, 723
PctI	GAATGC	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	799
PfeI	GAWTC	2 cut(s)	158, 169
PkrI	GCNGC	5 cut(s)	430, 519, 661, 709, 787
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	3 cut(s)	259, 597, 865
PstNI	CAGNNNCTG	1 cut(s)	362
PvuII	CAGCTG	2 cut(s)	92, 737
RsaI	GTAC	3 cut(s)	113, 390, 670
RsaNI	GTAC	3 cut(s)	112, 389, 669
SaqAI	TTAA	6 cut(s)	144, 219, 264, 330, 561, 747
SatI	GCNGC	5 cut(s)	429, 518, 660, 708, 786
Sau3AI	GATC	1 cut(s)	829
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	448
SfaNI	GCATC	3 cut(s)	37, 368, 374
SmlI	CTYRAG	2 cut(s)	402, 560
SmoI	CTYRAG	2 cut(s)	402, 560
Sse9I	AATT	3 cut(s)	39, 182, 575
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	6 cut(s)	236, 726, 770, 792, 852, 858
StyD4I	CCNGG	1 cut(s)	446
TaaI	ACNGT	5 cut(s)	262, 341, 621, 815, 903
TaqI	TCGA	3 cut(s)	45, 70, 730
TasI	AATT	3 cut(s)	39, 182, 575
TatI	WGTACW	3 cut(s)	111, 388, 668
TfiI	GAWTC	2 cut(s)	158, 169
Tru1I	TTAA	6 cut(s)	144, 219, 264, 330, 561, 747
Tru9I	TTAA	6 cut(s)	144, 219, 264, 330, 561, 747
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	5 cut(s)	428, 517, 659, 707, 785
TspDTI	ATGAA	3 cut(s)	150, 360, 555
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	182
XbaI	TCTAGA	3 cut(s)	769, 791, 857
XmiI	GTMKAC	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	799
XspI	CTAG	6 cut(s)	236, 726, 770, 792, 852, 858
Zsp2I	ATGCAT	2 cut(s)	52, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.