zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09290 |
| fragaria_vesca | FvH4_6g13150 |
| prunus_persica | Prupe.6G260600_v2.0.a1 |
| rosa_laevigata | RLG00000024633 |
| rosa_multiflora | Rmu_sc0000550.1_g000023 |
| rosa_roxburghii | Rroxscaffold_6G00414970 |
| rosa_rugosa | Rorug03G0077600 |
| rosa_samantha | Rh3BG143300 Rh3CG144300 Rh3DG144600 |
| rosa_wichuraiana | Rw3G011630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 477 |
| AflIII | ACRYGT | 1 cut(s) | 305 |
| AgsI | TTSAA | 2 cut(s) | 374, 461 |
| AluBI | AGCT | 4 cut(s) | 202, 299, 385, 478 |
| AluI | AGCT | 4 cut(s) | 202, 299, 385, 478 |
| Alw26I | GTCTC | 2 cut(s) | 171, 264 |
| AlwI | GGATC | 1 cut(s) | 477 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 117 |
| Ama87I | CYCGRG | 1 cut(s) | 473 |
| AoxI | GGCC | 1 cut(s) | 487 |
| AsuNHI | GCTAGC | 1 cut(s) | 419 |
| AvaI | CYCGRG | 1 cut(s) | 473 |
| BbsI | GAAGAC | 1 cut(s) | 515 |
| BccI | CCATC | 1 cut(s) | 422 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 224, 258 |
| BclI | TGATCA | 2 cut(s) | 313, 397 |
| BcoDI | GTCTC | 2 cut(s) | 171, 264 |
| BfaI | CTAG | 3 cut(s) | 149, 263, 420 |
| BglII | AGATCT | 1 cut(s) | 98 |
| BmeT110I | CYCGRG | 1 cut(s) | 473 |
| BmsI | GCATC | 2 cut(s) | 232, 254 |
| BmtI | GCTAGC | 1 cut(s) | 423 |
| BpiI | GAAGAC | 1 cut(s) | 515 |
| BpuEI | CTTGAG | 1 cut(s) | 126 |
| BsaAI | YACGTR | 1 cut(s) | 106 |
| BsaBI | GATNNNNATC | 1 cut(s) | 318 |
| Bse1I | ACTGG | 1 cut(s) | 91 |
| Bse8I | GATNNNNATC | 1 cut(s) | 318 |
| BseGI | GGATG | 3 cut(s) | 165, 226, 245 |
| BseJI | GATNNNNATC | 1 cut(s) | 318 |
| BseMII | CTCAG | 1 cut(s) | 205 |
| BseNI | ACTGG | 1 cut(s) | 91 |
| BshFI | GGCC | 1 cut(s) | 489 |
| BsiHKCI | CYCGRG | 1 cut(s) | 473 |
| BsmAI | GTCTC | 2 cut(s) | 171, 264 |
| BsmI | GAATGC | 1 cut(s) | 142 |
| BsnI | GGCC | 1 cut(s) | 489 |
| BsoBI | CYCGRG | 1 cut(s) | 473 |
| Bsp143I | GATC | 5 cut(s) | 98, 313, 319, 397, 469 |
| BspANI | GGCC | 1 cut(s) | 489 |
| BspCNI | CTCAG | 1 cut(s) | 204 |
| BspOI | GCTAGC | 1 cut(s) | 423 |
| BspPI | GGATC | 1 cut(s) | 477 |
| BsrI | ACTGG | 1 cut(s) | 91 |
| BssMI | GATC | 5 cut(s) | 98, 313, 319, 397, 469 |
| Bst4CI | ACNGT | 1 cut(s) | 62 |
| Bst6I | CTCTTC | 1 cut(s) | 169 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 117 |
| BstBAI | YACGTR | 1 cut(s) | 106 |
| BstC8I | GCNNGC | 2 cut(s) | 383, 421 |
| BstDEI | CTNAG | 1 cut(s) | 191 |
| BstF5I | GGATG | 3 cut(s) | 165, 226, 245 |
| BstKTI | GATC | 5 cut(s) | 101, 316, 322, 400, 472 |
| BstMAI | GTCTC | 2 cut(s) | 171, 264 |
| BstMBI | GATC | 5 cut(s) | 98, 313, 319, 397, 469 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 117, 126 |
| BstNSI | RCATGY | 1 cut(s) | 309 |
| BstSNI | TACGTA | 1 cut(s) | 106 |
| BstV2I | GAAGAC | 1 cut(s) | 515 |
| BstX2I | RGATCY | 2 cut(s) | 98, 469 |
| BstYI | RGATCY | 2 cut(s) | 98, 469 |
| BsuRI | GGCC | 1 cut(s) | 489 |
| BtsCI | GGATG | 3 cut(s) | 165, 226, 245 |
| Cac8I | GCNNGC | 2 cut(s) | 383, 421 |
| CaiI | CAGNNNCTG | 1 cut(s) | 117 |
| CseI | GACGC | 1 cut(s) | 484 |
| CviAII | CATG | 2 cut(s) | 306, 401 |
| CviJI | RGCY | 8 cut(s) | 129, 185, 202, 299, 385, 419, 478, 489 |
| CviKI_1 | RGCY | 8 cut(s) | 129, 185, 202, 299, 385, 419, 478, 489 |
| DdeI | CTNAG | 1 cut(s) | 191 |
| DpnI | GATC | 5 cut(s) | 100, 315, 321, 399, 471 |
| DpnII | GATC | 5 cut(s) | 98, 313, 319, 397, 469 |
| Eam1104I | CTCTTC | 1 cut(s) | 169 |
| EarI | CTCTTC | 1 cut(s) | 169 |
| Eco105I | TACGTA | 1 cut(s) | 106 |
| Eco88I | CYCGRG | 1 cut(s) | 473 |
| EcoT22I | ATGCAT | 1 cut(s) | 247 |
| FaeI | CATG | 2 cut(s) | 309, 404 |
| FatI | CATG | 2 cut(s) | 305, 400 |
| FauNDI | CATATG | 1 cut(s) | 159 |
| FbaI | TGATCA | 2 cut(s) | 313, 397 |
| FokI | GGATG | 3 cut(s) | 152, 232, 233 |
| FspBI | CTAG | 3 cut(s) | 149, 263, 420 |
| HaeIII | GGCC | 1 cut(s) | 489 |
| HgaI | GACGC | 1 cut(s) | 484 |
| Hin1II | CATG | 2 cut(s) | 309, 404 |
| HindIII | AAGCTT | 3 cut(s) | 200, 297, 383 |
| HinfI | GANTC | 2 cut(s) | 80, 442 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 194, 250 |
| Hpy188III | TCNNGA | 7 cut(s) | 96, 133, 263, 317, 374, 452, 473 |
| Hpy99I | CGWCG | 2 cut(s) | 233, 500 |
| HpyCH4III | ACNGT | 1 cut(s) | 62 |
| HpyCH4IV | ACGT | 1 cut(s) | 105 |
| HpyCH4V | TGCA | 3 cut(s) | 111, 120, 245 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 117, 126 |
| HpyF3I | CTNAG | 1 cut(s) | 191 |
| HpySE526I | ACGT | 1 cut(s) | 105 |
| Hsp92II | CATG | 2 cut(s) | 309, 404 |
| Ksp22I | TGATCA | 2 cut(s) | 313, 397 |
| Kzo9I | GATC | 5 cut(s) | 98, 313, 319, 397, 469 |
| LpnPI | CCDG | 3 cut(s) | 98, 104, 166 |
| LweI | GCATC | 2 cut(s) | 232, 254 |
| MaeI | CTAG | 3 cut(s) | 149, 263, 420 |
| MaeII | ACGT | 1 cut(s) | 105 |
| MaeIII | GTNAC | 1 cut(s) | 409 |
| MalI | GATC | 5 cut(s) | 100, 315, 321, 399, 471 |
| MboI | GATC | 5 cut(s) | 98, 313, 319, 397, 469 |
| MboII | GAAGA | 3 cut(s) | 186, 221, 517 |
| MflI | RGATCY | 2 cut(s) | 98, 469 |
| MluCI | AATT | 1 cut(s) | 356 |
| MlyI | GAGTC | 1 cut(s) | 451 |
| MnlI | CCTC | 2 cut(s) | 146, 409 |
| Mph1103I | ATGCAT | 1 cut(s) | 247 |
| MseI | TTAA | 1 cut(s) | 270 |
| MslI | CAYNNNNRTG | 1 cut(s) | 450 |
| Mva1269I | GAATGC | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 117, 126 |
| NdeI | CATATG | 1 cut(s) | 159 |
| NdeII | GATC | 5 cut(s) | 98, 313, 319, 397, 469 |
| NheI | GCTAGC | 1 cut(s) | 419 |
| NlaIII | CATG | 2 cut(s) | 309, 404 |
| NmeAIII | GCCGAG | 1 cut(s) | 259 |
| NmuCI | GTSAC | 1 cut(s) | 409 |
| NsiI | ATGCAT | 1 cut(s) | 247 |
| NspI | RCATGY | 1 cut(s) | 309 |
| PaeR7I | CTCGAG | 1 cut(s) | 473 |
| PciI | ACATGT | 1 cut(s) | 305 |
| PctI | GAATGC | 1 cut(s) | 142 |
| PfeI | GAWTC | 1 cut(s) | 80 |
| PleI | GAGTC | 1 cut(s) | 450 |
| PpsI | GAGTC | 1 cut(s) | 450 |
| Ppu21I | YACGTR | 1 cut(s) | 106 |
| PscI | ACATGT | 1 cut(s) | 305 |
| PstNI | CAGNNNCTG | 1 cut(s) | 117 |
| PsuI | RGATCY | 2 cut(s) | 98, 469 |
| RseI | CAYNNNNRTG | 1 cut(s) | 450 |
| SaqAI | TTAA | 1 cut(s) | 270 |
| Sau3AI | GATC | 5 cut(s) | 98, 313, 319, 397, 469 |
| SchI | GAGTC | 1 cut(s) | 451 |
| SetI | ASST | 7 cut(s) | 108, 204, 270, 301, 387, 411, 480 |
| SfaNI | GCATC | 2 cut(s) | 232, 254 |
| Sfr274I | CTCGAG | 1 cut(s) | 473 |
| SlaI | CTCGAG | 1 cut(s) | 473 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 450 |
| SmlI | CTYRAG | 2 cut(s) | 141, 473 |
| SmoI | CTYRAG | 2 cut(s) | 141, 473 |
| SnaBI | TACGTA | 1 cut(s) | 106 |
| Sse9I | AATT | 1 cut(s) | 356 |
| SspMI | CTAG | 3 cut(s) | 149, 263, 420 |
| TaaI | ACNGT | 1 cut(s) | 62 |
| TaiI | ACGT | 1 cut(s) | 108 |
| TaqI | TCGA | 4 cut(s) | 134, 434, 440, 474 |
| TasI | AATT | 1 cut(s) | 356 |
| TfiI | GAWTC | 1 cut(s) | 80 |
| Tru1I | TTAA | 1 cut(s) | 270 |
| Tru9I | TTAA | 1 cut(s) | 270 |
| TseFI | GTSAC | 1 cut(s) | 409 |
| Tsp45I | GTSAC | 1 cut(s) | 409 |
| TspDTI | ATGAA | 2 cut(s) | 176, 288 |
| TspGWI | ACGGA | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 262 |
| XceI | RCATGY | 1 cut(s) | 309 |
| XhoI | CTCGAG | 1 cut(s) | 473 |
| XspI | CTAG | 3 cut(s) | 149, 263, 420 |
| Zsp2I | ATGCAT | 1 cut(s) | 247 |