FvH4_6g13150

Protein of unknown function, DUF604

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017957
Physical Location & Seq
Reverse (-)
8027671 .. 8028641
971 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13150.t1

Sequence Viewer

Length: 552 bp
ATGAAGAGGAATGATACTGTCGAAAAATTCAATCGGAGTAAATGGACCTCCAACGATCAGATCAGTGGTTTGGGGCAGGCAAAGTCCTATGCATGTACCTTCTGCAAGCGAGGTTTCTCTAATGCACAAGCTCTTGGGGGACACATGAACATTCATCGAAGAGATCGAGCCCGGATCATCAGACAGTACTCGGAAGACCAAAACCAAGTCTCTTCTTCGGATGCGGTGAAATGCCCCTCAACTTCTGCTCATCATGATCCTCTTCGTGCTAATGATTCCGAGGAGAAAACTTTGCTGCAACTGGAAAGGAAGGGAACCAACATGATTTCAAGAAAGCCTTCATGCCCTTCCTCTACTAGATCAGAAAATCATGAAATTGTGGCTCGTTCCGAGGGAAAAATCAGTAGTTCGGAAGATGTTCAAGCACAGCTGCAGCTTCCTTTGTTTCTCGAAGAACCAGTAGTATCAAATGGCGGTGGAAAATTTGTGGAGCTGGACTTGGAGCTCCGGTTAGGACCCGAGAAAAATTTTATCACCAGAGAATTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

184

Amino Acids

20.55

Weight (kDa)

8.71

Isoelectric Point (pI)

62.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09290
fragaria_vesca FvH4_6g13150
prunus_persica Prupe.6G260600_v2.0.a1
rosa_laevigata RLG00000024633
rosa_multiflora Rmu_sc0000550.1_g000023
rosa_roxburghii Rroxscaffold_6G00414970
rosa_rugosa Rorug03G0077600
rosa_samantha Rh3BG143300 Rh3CG144300 Rh3DG144600
rosa_wichuraiana Rw3G011630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 224, 474
AclWI GGATC 2 cut(s) 182, 251
AcsI RAATTY 4 cut(s) 26, 482, 526, 542
AfaI GTAC 2 cut(s) 97, 188
AgsI TTSAA 3 cut(s) 31, 330, 422
AluBI AGCT 5 cut(s) 131, 430, 436, 493, 505
AluI AGCT 5 cut(s) 131, 430, 436, 493, 505
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 2 cut(s) 182, 251
Ama87I CYCGRG 1 cut(s) 518
ApeKI GCWGC 3 cut(s) 295, 430, 433
ApoI RAATTY 4 cut(s) 26, 482, 526, 542
Asp700I GAANNNNTTC 2 cut(s) 337, 417
AspS9I GGNCC 2 cut(s) 45, 515
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 238, 526
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 2 cut(s) 45, 515
BanII GRGCYC 2 cut(s) 172, 507
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 3 cut(s) 282, 417, 445
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 431
BisI GCNGC 3 cut(s) 296, 431, 434
BlsI GCNGC 3 cut(s) 297, 432, 435
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 2 cut(s) 45, 515
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 45, 515
BmiI GGNNCC 2 cut(s) 316, 517
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 279, 390
BsaWI WCCGGW 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bse1I ACTGG 2 cut(s) 306, 458
BseDI CCNNGG 2 cut(s) 279, 390
BseGI GGATG 1 cut(s) 226
BseNI ACTGG 2 cut(s) 306, 458
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 3 cut(s) 282, 417, 445
BsiHKAI GWGCWC 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 2 cut(s) 172, 508
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 172, 507
Bsp143I GATC 6 cut(s) 55, 60, 163, 174, 256, 359
BspACI CCGC 2 cut(s) 224, 474
BspHI TCATGA 2 cut(s) 253, 370
BspLI GGNNCC 2 cut(s) 316, 517
BspMAI CTGCAG 1 cut(s) 435
BspPI GGATC 2 cut(s) 182, 251
BsrI ACTGG 2 cut(s) 306, 458
BssECI CCNNGG 2 cut(s) 279, 390
BssMI GATC 6 cut(s) 55, 60, 163, 174, 256, 359
Bst4CI ACNGT 2 cut(s) 19, 186
Bst6I CTCTTC 3 cut(s) 154, 217, 267
BstC8I GCNNGC 2 cut(s) 78, 107
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 6 cut(s) 58, 63, 166, 177, 259, 362
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 6 cut(s) 55, 60, 163, 174, 256, 359
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 282, 417, 445
BstV2I GAAGAC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 78, 107
CciI TCATGA 2 cut(s) 253, 370
Cfr13I GGNCC 2 cut(s) 45, 515
Csp6I GTAC 2 cut(s) 96, 187
CviAII CATG 6 cut(s) 93, 145, 254, 322, 342, 371
CviJI RGCY 8 cut(s) 131, 170, 337, 383, 430, 436, 493, 505
CviKI_1 RGCY 8 cut(s) 131, 170, 337, 383, 430, 436, 493, 505
CviQI GTAC 2 cut(s) 96, 187
DpnI GATC 6 cut(s) 57, 62, 165, 176, 258, 361
DpnII GATC 6 cut(s) 55, 60, 163, 174, 256, 359
Eam1104I CTCTTC 3 cut(s) 154, 217, 267
EarI CTCTTC 3 cut(s) 154, 217, 267
Ecl136II GAGCTC 1 cut(s) 505
Eco24I GRGCYC 2 cut(s) 172, 507
Eco47I GGWCC 2 cut(s) 45, 515
Eco53kI GAGCTC 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 515
EcoT22I ATGCAT 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 172, 507
FaeI CATG 6 cut(s) 96, 148, 257, 325, 345, 374
FaiI YATR 7 cut(s) 90, 94, 146, 255, 323, 343, 372
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 1 cut(s) 153
FatI CATG 6 cut(s) 92, 144, 253, 321, 341, 370
Fnu4HI GCNGC 3 cut(s) 296, 431, 434
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 2 cut(s) 172, 507
Fsp4HI GCNGC 3 cut(s) 296, 431, 434
FspBI CTAG 1 cut(s) 357
GluI GCNGC 3 cut(s) 296, 431, 434
HapII CCGG 2 cut(s) 172, 508
Hin1II CATG 6 cut(s) 96, 148, 257, 325, 345, 374
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 172, 508
HphI GGTGA 2 cut(s) 238, 526
Hpy188I TCNGA 9 cut(s) 36, 60, 182, 193, 220, 280, 364, 391, 412
Hpy188III TCNNGA 4 cut(s) 254, 330, 371, 449
HpyAV CCTTC 4 cut(s) 109, 304, 348, 357
HpyCH4III ACNGT 2 cut(s) 19, 186
HpyCH4V TGCA 5 cut(s) 92, 105, 125, 298, 433
Hsp92II CATG 6 cut(s) 96, 148, 257, 325, 345, 374
Kzo9I GATC 6 cut(s) 55, 60, 163, 174, 256, 359
LmnI GCTCC 3 cut(s) 490, 502, 510
LpnPI CCDG 6 cut(s) 62, 185, 287, 471, 479, 521
Lsp1109I GCAGC 3 cut(s) 282, 417, 445
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 357
MalI GATC 6 cut(s) 57, 62, 165, 176, 258, 361
MboI GATC 6 cut(s) 55, 60, 163, 174, 256, 359
MboII GAAGA 8 cut(s) 16, 171, 204, 206, 207, 254, 425, 464
MhlI GDGCHC 2 cut(s) 172, 507
MluCI AATT 5 cut(s) 26, 375, 482, 526, 542
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 7 cut(s) 58, 104, 247, 270, 274, 361, 385
Mph1103I ATGCAT 1 cut(s) 94
MroXI GAANNNNTTC 2 cut(s) 337, 417
MseI TTAA 1 cut(s) 550
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 2 cut(s) 172, 508
MspR9I CCNGG 1 cut(s) 172
NciI CCSGG 1 cut(s) 172
NdeII GATC 6 cut(s) 55, 60, 163, 174, 256, 359
NlaIII CATG 6 cut(s) 96, 148, 257, 325, 345, 374
NlaIV GGNNCC 2 cut(s) 316, 517
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 1 cut(s) 96
PagI TCATGA 2 cut(s) 253, 370
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PdmI GAANNNNTTC 2 cut(s) 337, 417
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 297, 432, 435
PpuMI RGGWCCY 1 cut(s) 515
Psp124BI GAGCTC 1 cut(s) 507
Psp5II RGGWCCY 1 cut(s) 515
PspN4I GGNNCC 2 cut(s) 316, 517
PspPI GGNCC 2 cut(s) 45, 515
PspPPI RGGWCCY 1 cut(s) 515
PstI CTGCAG 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 2 cut(s) 97, 188
RsaNI GTAC 2 cut(s) 96, 187
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 1 cut(s) 550
SatI GCNGC 3 cut(s) 296, 431, 434
Sau3AI GATC 6 cut(s) 55, 60, 163, 174, 256, 359
Sau96I GGNCC 2 cut(s) 45, 515
ScaI AGTACT 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 2 cut(s) 172, 507
SetI ASST 8 cut(s) 50, 101, 115, 133, 432, 438, 495, 507
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 431
SinI GGWCC 2 cut(s) 45, 515
Sse9I AATT 5 cut(s) 26, 375, 482, 526, 542
SsiI CCGC 2 cut(s) 224, 474
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 19, 186
TaqI TCGA 4 cut(s) 21, 157, 166, 450
TasI AATT 5 cut(s) 26, 375, 482, 526, 542
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 550
Tru9I TTAA 1 cut(s) 550
TscAI CASTG 1 cut(s) 70
TseI GCWGC 3 cut(s) 295, 430, 433
TspDTI ATGAA 5 cut(s) 17, 143, 161, 330, 387
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 2 cut(s) 45, 515
XapI RAATTY 4 cut(s) 26, 482, 526, 542
XceI RCATGY 1 cut(s) 96
XmnI GAANNNNTTC 2 cut(s) 337, 417
XspI CTAG 1 cut(s) 357
ZrmI AGTACT 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.