Rh3CG144300

Protein of unknown function, DUF604

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017957
Physical Location & Seq
Reverse (-)
12021529 .. 12026914
5386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG144300.1

Sequence Viewer

Length: 564 bp
ATGGAGAGGAATCACTCCGTCAAAAAACTCGATCTTAAATGGACCTCCGATGATCAAATCAGTAGTTTGGGGCAGGCAAAGTCCTACGCCTGTACCTTCTGCAAGCGAGGCTTCTCGAATGCACAAGCTCTTGGGGGACACATGAACATTCATAGAAGAGATCGAGCCCGTATCAGACAGTACTCGGAAGATCAAAACCAACTCTCTACGGATGAGGTGAAAAACTCGTCAACTGCTGCTCATCATGATCCTCCTCGTGCTAATAATTCCGAAGAGAAAACTTCGTCACACTTGGAATTGAAGGGAACCAGCATGATCTTAAGAAAGCCTTCATACCCTTTCAGTACTAGATCAGAAGATCATGAAATTGTGGTTCGTTCCAAGGGAAAAATGGGTAGTTCGGAAGATGTTCAACCACAGCTTCAGCTTCCTTTCAATTTCGAAGAACCAGTATTAGCAAGTGACAATTTAGCAGGTCATACAAATGGCTGTGGAGAAGTTGAGGAGTTGGACTTGGAGCTCCGGTTAGGATCCGAGCCACCCGAGAGTCCGAGACAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

187

Amino Acids

20.99

Weight (kDa)

6.07

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09290
fragaria_vesca FvH4_6g13150
prunus_persica Prupe.6G260600_v2.0.a1
rosa_laevigata RLG00000024633
rosa_multiflora Rmu_sc0000550.1_g000023
rosa_roxburghii Rroxscaffold_6G00414970
rosa_rugosa Rorug03G0077600
rosa_samantha Rh3BG143300 Rh3CG144300 Rh3DG144600
rosa_wichuraiana Rw3G011630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 464
AclWI GGATC 3 cut(s) 242, 525, 538
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 3 cut(s) 94, 182, 346
AflII CTTAAG 1 cut(s) 319
AgsI TTSAA 3 cut(s) 301, 413, 436
AluBI AGCT 4 cut(s) 128, 421, 427, 520
AluI AGCT 4 cut(s) 128, 421, 427, 520
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 3 cut(s) 242, 525, 538
Ama87I CYCGRG 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 236
Asp700I GAANNNNTTC 2 cut(s) 328, 408
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 441
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 1 cut(s) 42
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BamHI GGATCC 1 cut(s) 530
BanII GRGCYC 2 cut(s) 169, 522
BauI CACGAG 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 223
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 464
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmcAI AGTACT 2 cut(s) 182, 346
Bme18I GGWCC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 307, 532
Bpu14I TTCGAA 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bse1I ACTGG 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 2 cut(s) 243, 518
BseXI GCAGC 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 1 cut(s) 523
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 542
Bsp119I TTCGAA 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 169, 522
Bsp143I GATC 9 cut(s) 31, 52, 160, 190, 247, 315, 350, 358, 530
BspHI TCATGA 2 cut(s) 244, 361
BspLI GGNNCC 2 cut(s) 307, 532
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 3 cut(s) 242, 525, 538
BspT104I TTCGAA 1 cut(s) 441
BspTI CTTAAG 1 cut(s) 319
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 9 cut(s) 31, 52, 160, 190, 247, 315, 350, 358, 530
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 2 cut(s) 151, 267
BstAFI CTTAAG 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 75, 104
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 9 cut(s) 34, 55, 163, 193, 250, 318, 353, 361, 533
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 9 cut(s) 31, 52, 160, 190, 247, 315, 350, 358, 530
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
BtsCI GGATG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 2 cut(s) 75, 104
CciI TCATGA 2 cut(s) 244, 361
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 3 cut(s) 93, 181, 345
CviAII CATG 4 cut(s) 142, 245, 313, 362
CviJI RGCY 9 cut(s) 111, 128, 167, 328, 421, 427, 489, 520, 538
CviKI_1 RGCY 9 cut(s) 111, 128, 167, 328, 421, 427, 489, 520, 538
CviQI GTAC 3 cut(s) 93, 181, 345
DpnI GATC 9 cut(s) 33, 54, 162, 192, 249, 317, 352, 360, 532
DpnII GATC 9 cut(s) 31, 52, 160, 190, 247, 315, 350, 358, 530
Eam1104I CTCTTC 2 cut(s) 151, 267
EarI CTCTTC 2 cut(s) 151, 267
Ecl136II GAGCTC 1 cut(s) 520
Eco130I CCWWGG 1 cut(s) 381
Eco24I GRGCYC 2 cut(s) 169, 522
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 381
EcoT38I GRGCYC 2 cut(s) 169, 522
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 4 cut(s) 145, 248, 316, 365
FaiI YATR 7 cut(s) 143, 153, 246, 314, 334, 363, 480
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 313, 345
FaqI GGGAC 1 cut(s) 150
FatI CATG 4 cut(s) 141, 244, 312, 361
FbaI TGATCA 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 2 cut(s) 169, 522
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 237
HapII CCGG 1 cut(s) 523
Hin1II CATG 4 cut(s) 145, 248, 316, 365
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 2 cut(s) 10, 547
HpaII CCGG 1 cut(s) 523
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 8 cut(s) 49, 176, 187, 271, 355, 403, 535, 552
Hpy188III TCNNGA 3 cut(s) 115, 245, 362
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 3 cut(s) 106, 295, 339
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 102, 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
Hsp92II CATG 4 cut(s) 145, 248, 316, 365
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 9 cut(s) 31, 52, 160, 190, 247, 315, 350, 358, 530
LmnI GCTCC 2 cut(s) 517, 525
LpnPI CCDG 6 cut(s) 59, 103, 322, 459, 462, 536
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 285, 461
MalI GATC 9 cut(s) 33, 54, 162, 192, 249, 317, 352, 360, 532
MboI GATC 9 cut(s) 31, 52, 160, 190, 247, 315, 350, 358, 530
MboII GAAGA 6 cut(s) 168, 200, 284, 368, 416, 455
MflI RGATCY 1 cut(s) 530
MhlI GDGCHC 2 cut(s) 169, 522
MluCI AATT 5 cut(s) 265, 296, 366, 436, 466
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 6 cut(s) 55, 101, 208, 261, 264, 496
MroXI GAANNNNTTC 2 cut(s) 328, 408
MseI TTAA 2 cut(s) 36, 320
MslI CAYNNNNRTG 1 cut(s) 483
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 1 cut(s) 523
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 9 cut(s) 31, 52, 160, 190, 247, 315, 350, 358, 530
NlaIII CATG 4 cut(s) 145, 248, 316, 365
NlaIV GGNNCC 2 cut(s) 307, 532
NmuCI GTSAC 2 cut(s) 285, 461
NspV TTCGAA 1 cut(s) 441
PagI TCATGA 2 cut(s) 244, 361
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 328, 408
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 522
PspN4I GGNNCC 2 cut(s) 307, 532
PspPI GGNCC 1 cut(s) 42
PsuI RGATCY 1 cut(s) 530
RsaI GTAC 3 cut(s) 94, 182, 346
RsaNI GTAC 3 cut(s) 93, 181, 345
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 2 cut(s) 36, 320
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 9 cut(s) 31, 52, 160, 190, 247, 315, 350, 358, 530
Sau96I GGNCC 1 cut(s) 42
ScaI AGTACT 2 cut(s) 182, 346
SchI GAGTC 1 cut(s) 556
SduI GDGCHC 2 cut(s) 169, 522
SetI ASST 8 cut(s) 47, 98, 130, 219, 423, 429, 478, 522
SfuI TTCGAA 1 cut(s) 441
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 5 cut(s) 265, 296, 366, 436, 466
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 522
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 4 cut(s) 30, 116, 163, 441
TasI AATT 5 cut(s) 265, 296, 366, 436, 466
TatI WGTACW 2 cut(s) 180, 344
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 36, 320
Tru9I TTAA 2 cut(s) 36, 320
TseFI GTSAC 2 cut(s) 285, 461
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 2 cut(s) 285, 461
TspDTI ATGAA 4 cut(s) 140, 158, 321, 378
TspGWI ACGGA 2 cut(s) 7, 224
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmnI GAANNNNTTC 2 cut(s) 328, 408
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 2 cut(s) 182, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.