Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017957

Physical Location & Seq

Genomic Coordinates Reverse (-)

25109881 .. 25110715

Gene Structure 835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G260600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGAGATATCACGCAAGCAATAATATCGAAAAATTTGATCAGATTAAATGGAGCTCATCGGATGACCAAATCAGTGGCTCAGGGCAGGCAAAGTCTTACATCTGTGCCTTCTGCAAGCGAAGCTTCTCTAACGCGCAGGCTCTAGGGGGTCACATGAACATTCATCGAAGAGATAGAGCCCGGATCAGACAATTCTCCGAAGATCAAAACCAGCTTGCAAATATTTCTTCTACTGATGGAATTACCAAAAACCCTAGTGCTCATCACAGTCGTGCTAATTCGGAGGACAAAAATTCAATACAAATGGAATTAAACGAAACCAACATCCCCAGAAACCCAATATTATCACACCCTTTTACCAGAGATGAAGATGATGATGTTGTGATCATCGACGCCGCGAATAAGGGAAAAGTTAGCATTGAAGAAGTTCAAGTTCAGCTTCAGCTTCCATTGTTTGTAGAGGAGCCATCCGGATTGGCCTGTACTGTCGACATTAATAAAAATACCGTAGAGTGTACAAGTGGAGGGTGCAGGGATGAAGAGACGATGAAGAGGGCTGAGGAATTGGACTTGGAGCTCCGGTTAGGACCCGAGCCGATTGAGACACCAAGCACTTTGAGCACAAGAGAGTTCTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051252 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2000278 GO:2000573 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

215

Amino Acids

24.05

Weight (kDa)

5.03

Isoelectric Point (pI)

63.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09290
fragaria_vesca	FvH4_6g13150
prunus_persica	Prupe.6G260600_v2.0.a1
rosa_laevigata	RLG00000024633
rosa_multiflora	Rmu_sc0000550.1_g000023
rosa_roxburghii	Rroxscaffold_6G00414970
rosa_rugosa	Rorug03G0077600
rosa_samantha	Rh3BG143300 Rh3CG144300 Rh3DG144600
rosa_wichuraiana	Rw3G011630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	2 cut(s)	137, 401
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	35, 295
AcuI	CTGAAG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	2 cut(s)	487, 520
AgsI	TTSAA	3 cut(s)	300, 425, 434
AleI	CACNNNNGTG	1 cut(s)	273
AluBI	AGCT	6 cut(s)	57, 126, 217, 442, 448, 580
AluI	AGCT	6 cut(s)	57, 126, 217, 442, 448, 580
Alw21I	GWGCWC	4 cut(s)	59, 265, 582, 626
Alw26I	GTCTC	2 cut(s)	539, 599
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	593
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	1 cut(s)	480
ApoI	RAATTY	2 cut(s)	35, 295
AseI	ATTAAT	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	590
AsuC2I	CCSGG	1 cut(s)	184
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	590
BanII	GRGCYC	3 cut(s)	59, 184, 582
Bbv12I	GWGCWC	4 cut(s)	59, 265, 582, 626
BbvCI	CCTCAGC	1 cut(s)	561
BccI	CCATC	2 cut(s)	233, 478
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BclI	TGATCA	2 cut(s)	40, 387
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	539, 599
BfaI	CTAG	2 cut(s)	146, 258
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	590
BmeT110I	CYCGRG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	2 cut(s)	468, 592
BmrFI	CCNGG	1 cut(s)	184
Bpu10I	CCTNAGC	2 cut(s)	82, 561
BpuMI	CCSGG	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	396
BsaWI	WCCGGW	2 cut(s)	473, 582
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
BseAI	TCCGGA	1 cut(s)	473
BseGI	GGATG	4 cut(s)	70, 327, 470, 544
BseMII	CTCAG	2 cut(s)	96, 552
BseRI	GAGGAG	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	553
Bsh1236I	CGCG	2 cut(s)	137, 401
BshFI	GGCC	1 cut(s)	482
BsiHKAI	GWGCWC	4 cut(s)	59, 265, 582, 626
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	3 cut(s)	184, 474, 583
BsmAI	GTCTC	2 cut(s)	539, 599
BsmBI	CGTCTC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	5 cut(s)	59, 184, 265, 582, 626
Bsp13I	TCCGGA	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	518
Bsp143I	GATC	4 cut(s)	40, 186, 205, 387
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	2 cut(s)	95, 553
BspEI	TCCGGA	1 cut(s)	473
BspFNI	CGCG	2 cut(s)	137, 401
BspLI	GGNNCC	2 cut(s)	468, 592
BspPI	GGATC	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	518
BssMI	GATC	4 cut(s)	40, 186, 205, 387
BssNI	GRCGYC	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	272, 490, 511
Bst6I	CTCTTC	3 cut(s)	166, 537, 548
BstACI	GRCGYC	1 cut(s)	396
BstAUI	TGTACA	1 cut(s)	518
BstC8I	GCNNGC	5 cut(s)	19, 90, 119, 141, 219
BstDEI	CTNAG	2 cut(s)	82, 561
BstF5I	GGATG	4 cut(s)	70, 327, 470, 544
BstFNI	CGCG	2 cut(s)	137, 401
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	43, 189, 208, 390
BstMAI	GTCTC	2 cut(s)	539, 599
BstMBI	GATC	4 cut(s)	40, 186, 205, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 621
BstSCI	CCNGG	1 cut(s)	182
BstUI	CGCG	2 cut(s)	137, 401
BstXI	CCANNNNNNTGG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	482
BtsCI	GGATG	4 cut(s)	70, 327, 470, 544
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	5 cut(s)	19, 90, 119, 141, 219
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	590
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	486, 519
CviAII	CATG	1 cut(s)	157
CviQI	GTAC	2 cut(s)	486, 519
DdeI	CTNAG	2 cut(s)	82, 561
DpnI	GATC	4 cut(s)	42, 188, 207, 389
DpnII	GATC	4 cut(s)	40, 186, 205, 387
Eam1104I	CTCTTC	3 cut(s)	166, 537, 548
EarI	CTCTTC	3 cut(s)	166, 537, 548
Ecl136II	GAGCTC	2 cut(s)	57, 580
Eco24I	GRGCYC	3 cut(s)	59, 184, 582
Eco32I	GATATC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	590
Eco53kI	GAGCTC	2 cut(s)	57, 580
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	593
EcoICRI	GAGCTC	2 cut(s)	57, 580
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRV	GATATC	1 cut(s)	11
EcoT38I	GRGCYC	3 cut(s)	59, 184, 582
Esp3I	CGTCTC	1 cut(s)	539
FaeI	CATG	1 cut(s)	160
FaiI	YATR	1 cut(s)	158
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 426, 458
FatI	CATG	1 cut(s)	156
FbaI	TGATCA	2 cut(s)	40, 387
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	4 cut(s)	77, 314, 457, 551
FriOI	GRGCYC	3 cut(s)	59, 184, 582
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	146, 258
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	3 cut(s)	184, 474, 583
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	124
HpaII	CCGG	3 cut(s)	184, 474, 583
Hpy166II	GTNNAC	2 cut(s)	493, 519
Hpy188I	TCNGA	5 cut(s)	45, 64, 191, 202, 286
Hpy188III	TCNNGA	1 cut(s)	474
Hpy8I	GTNNAC	2 cut(s)	493, 519
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	3 cut(s)	272, 490, 511
HpyCH4V	TGCA	3 cut(s)	117, 221, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 621
HpyF3I	CTNAG	2 cut(s)	82, 561
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	473
Ksp22I	TGATCA	2 cut(s)	40, 387
Kzo9I	GATC	4 cut(s)	40, 186, 205, 387
LmnI	GCTCC	4 cut(s)	54, 466, 577, 585
MaeI	CTAG	2 cut(s)	146, 258
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	4 cut(s)	42, 188, 207, 389
MboI	GATC	4 cut(s)	40, 186, 205, 387
MboII	GAAGA	7 cut(s)	183, 215, 222, 383, 437, 554, 565
MhlI	GDGCHC	5 cut(s)	59, 184, 265, 582, 626
MluCI	AATT	7 cut(s)	35, 194, 243, 280, 295, 311, 566
MnlI	CCTC	5 cut(s)	280, 457, 521, 549, 556
MroI	TCCGGA	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	3 cut(s)	48, 314, 498
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	3 cut(s)	184, 474, 583
MspR9I	CCNGG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	137, 401
MwoI	GCNNNNNNNGC	2 cut(s)	123, 621
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	4 cut(s)	40, 186, 205, 387
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	468, 592
NmuCI	GTSAC	1 cut(s)	152
OliI	CACNNNNGTG	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	590
PshBI	ATTAAT	1 cut(s)	498
Psp124BI	GAGCTC	2 cut(s)	59, 582
Psp5II	RGGWCCY	1 cut(s)	590
PspN4I	GGNNCC	2 cut(s)	468, 592
PspPI	GGNCC	1 cut(s)	590
PspPPI	RGGWCCY	1 cut(s)	590
RsaI	GTAC	2 cut(s)	487, 520
RsaNI	GTAC	2 cut(s)	486, 519
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	2 cut(s)	59, 582
SalI	GTCGAC	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	48, 314, 498
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	4 cut(s)	40, 186, 205, 387
Sau96I	GGNCC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	5 cut(s)	59, 184, 265, 582, 626
SetI	ASST	6 cut(s)	59, 128, 219, 444, 450, 582
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	7 cut(s)	35, 194, 243, 280, 295, 311, 566
SsiI	CCGC	1 cut(s)	399
SspI	AATATT	2 cut(s)	226, 345
SspMI	CTAG	2 cut(s)	146, 258
SstI	GAGCTC	2 cut(s)	59, 582
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	3 cut(s)	272, 490, 511
TaqI	TCGA	4 cut(s)	30, 169, 393, 492
TasI	AATT	7 cut(s)	35, 194, 243, 280, 295, 311, 566
TatI	WGTACW	2 cut(s)	485, 518
TauI	GCSGC	1 cut(s)	401
Tru1I	TTAA	3 cut(s)	48, 314, 498
Tru9I	TTAA	3 cut(s)	48, 314, 498
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	5 cut(s)	155, 173, 384, 555, 566
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	590
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	2 cut(s)	35, 295
XmiI	GTMKAC	1 cut(s)	492
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	2 cut(s)	146, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.