Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012152

Physical Location & Seq

Genomic Coordinates Forward (+)

2940305 .. 2942203

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGACGAGACTACCCCTCTTCGTCGTCCTCCTCCTCTTCTCCGCAAGTTGCATCACTCGCACGGCGGCGGAGATCAAATCTCTCACAATCTCCGACGATTCTAGGCCGATGATTCTCTTCGAAAAGTTCGGATTCACTCAGTCCGGCCATGTTAGCGTCTCTATTTCCTCTGTAGCAGTAGTATCTTCTTCGTCTGATCCGATCCCGGATCCATCGAGGTTAGGGTTCTTCCTTATGTCAGAGGAATCGCTTCTCCAGGTAGTCTTAGAGATCGAGCAAAACCCCAACTTCTGTGTACTCGATTCCAATTACGTCCTCCATCTCTTCACATTTCACGATCTCTCTCCTCCCCCTGGTTCCAAATACGAGCACTTGTATCCGGTGATGTCTCCGAACGAATACTCTCTCTTCTTCGTGAATTGCGTACCGGAAACCAAAATTTCGATGAAGGTTCGAACGGAGATGTACAATTTAGATCCGAACGGGTCTAAGGATTACCTTCCTGCCGGGTCAACCCGATTACCCGGATTGTATTTCTTCTTCTCCCTCGGTTACTTAGCTTTCCTTGGTCTCTGGGGATATGCTTGTTGGGTCAATAAACGTGTTGTTCATAGGATCCATGTTCTTATGGCGGCTCTGCTTTTAATGAAGGCTTTGAATCTGATCTGCGCCGCCGAGGATAAGCATTACGTGAAAGTCACCGGTACTCCTCATGGCTGGGATGTTTTATTCTACATTTTCCAGTTTATTCGTGTTGTTCTTCTCTTCACTGTGATTGTGTTGATTGGAACTGGCTGGTCCTTCTTGAAGCCATTCTTACAAGAGAAAGAGAAGAATGTGTTGATGGTTGTTGTTCCACTTCAGGTTCTCGCTAACATTGCTTCCATTGTGATTGGAGAGACTGGACCTTTTATCAAAGATTGGGTTACTTGGAATCAGATATTCTTGCTTGTAGATATAGTTTGCTGTTGTGCGATCTTATTCCCTATTGTTTGGTCGATACGTTCGCTAAGAGAGACTTCGAAAACCGATGGGAAAGCGGCTAGGAACTTGGCGAAATTGACTCTGTTTAGACAATTCTACATTGTTGTCATCGGGTATTTGTACTTTACGAGGATTGTAGTGTTTGCGCTGAAGACAATCGCAGCTTATAAGTATCGGTGGGTGAGCAATGCAGCTGAGGAGATTGCAAGTCTGGCGTTTTACATGTTGATGTTCTATATGTTCAGGCCTGTCGAGAAGAATGAGTATTTCGTTATAGATGAAGAAGAAGAAGAAGCCGCCGAGCTGGCCTTGAAGGAGGATGATTTTGAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016192 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0032050 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0070013 GO:0072583 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

439

Amino Acids

50.08

Weight (kDa)

5.82

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAND6-7_N	PF21904	26 - 157	9.2e-62	CAND6/7, N-terminal domain
GOST_TM	PF06814	176 - 415	1e-28	GOST, seven transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09570 AT5G18520
fragaria_vesca	FvH4_6g14730
malus_domestica	MD04G1116700.v1.1 MD12G1132400.v1.1
prunus_persica	Prupe.6G246500_v2.0.a1
pyrus_communis	pycom04g10650
rosa_chinensis	RchiOBHm_Chr3g0467951
rosa_laevigata	RLG00000024464
rosa_multiflora	Rmu_sc0001793.1_g000057 Rmu_sc0006017.1_g000004 Rmu_sc0034877.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413260
rosa_rugosa	Rorug03G0090600
rosa_samantha	Rh3AG139300 Rh3BG160800 Rh3CG160700 Rh3DG161300
rosa_wichuraiana	Rw3G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1152
AciI	CCGC	7 cut(s)	42, 65, 68, 632, 672, 1040, 1281
AclWI	GGATC	7 cut(s)	191, 196, 203, 216, 470, 610, 623
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	2 cut(s)	845, 1154
AfaI	GTAC	5 cut(s)	297, 426, 467, 706, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflIII	ACRYGT	2 cut(s)	601, 1206
AgeI	ACCGGT	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	658, 808, 1297, 1313
AjnI	CCWGG	2 cut(s)	255, 352
AluBI	AGCT	4 cut(s)	560, 1148, 1178, 1288
AluI	AGCT	4 cut(s)	560, 1148, 1178, 1288
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	5 cut(s)	163, 393, 575, 893, 1010
AlwI	GGATC	7 cut(s)	191, 196, 203, 216, 470, 610, 623
AoxI	GGCC	4 cut(s)	104, 145, 1229, 1290
ApeKI	GCWGC	2 cut(s)	1145, 1175
ApoI	RAATTY	1 cut(s)	438
AsiGI	ACCGGT	1 cut(s)	701
Asp700I	GAANNNNTTC	2 cut(s)	249, 812
AspLEI	GCGC	2 cut(s)	671, 1132
AspS9I	GGNCC	2 cut(s)	798, 905
AsuC2I	CCSGG	3 cut(s)	206, 508, 525
AsuHPI	GGTGA	3 cut(s)	394, 691, 1177
AsuII	TTCGAA	3 cut(s)	120, 454, 1022
AvaII	GGWCC	2 cut(s)	798, 905
BamHI	GGATCC	2 cut(s)	208, 615
BarI	GAAGNNNNNNTAC	2 cut(s)	524, 556
BbsI	GAAGAC	1 cut(s)	1142
Bbv12I	GWGCWC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	1179
BbvI	GCAGC	2 cut(s)	1157, 1187
BccI	CCATC	4 cut(s)	220, 327, 838, 1025
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	2 cut(s)	257, 354
BciVI	GTATCC	1 cut(s)	387
BcnI	CCSGG	3 cut(s)	206, 508, 525
BcoDI	GTCTC	5 cut(s)	163, 393, 575, 893, 1010
BfaI	CTAG	2 cut(s)	102, 1044
BfmI	CTRYAG	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	387
BglI	GCCNNNNNGGC	1 cut(s)	1289
BisI	GCNGC	7 cut(s)	66, 633, 672, 1041, 1146, 1176, 1281
BlsI	GCNGC	7 cut(s)	67, 634, 673, 1042, 1147, 1177, 1282
Bme1390I	CCNGG	5 cut(s)	206, 257, 354, 508, 525
Bme18I	GGWCC	2 cut(s)	798, 905
BmgT120I	GGNCC	2 cut(s)	798, 905
BmiI	GGNNCC	3 cut(s)	210, 358, 617
BmrFI	CCNGG	5 cut(s)	206, 257, 354, 508, 525
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	1142
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	1179
Bpu14I	TTCGAA	3 cut(s)	120, 454, 1022
BpuMI	CCSGG	3 cut(s)	206, 508, 525
BsaAI	YACGTR	1 cut(s)	691
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	4 cut(s)	352, 547, 565, 675
BsaWI	WCCGGW	3 cut(s)	379, 427, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	3 cut(s)	742, 796, 907
Bse3DI	GCAATG	2 cut(s)	876, 1177
BseBI	CCWGG	2 cut(s)	257, 354
BseDI	CCNNGG	4 cut(s)	352, 547, 565, 675
BseGI	GGATG	2 cut(s)	727, 1309
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	2 cut(s)	876, 1177
BseMII	CTCAG	2 cut(s)	152, 1170
BseNI	ACTGG	3 cut(s)	742, 796, 907
BseRI	GAGGAG	5 cut(s)	20, 23, 336, 699, 1196
BseXI	GCAGC	2 cut(s)	1157, 1187
BseYI	CCCAGC	1 cut(s)	717
BshFI	GGCC	4 cut(s)	106, 147, 1231, 1292
BshTI	ACCGGT	1 cut(s)	701
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	7 cut(s)	144, 206, 380, 428, 507, 525, 702
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	5 cut(s)	163, 393, 575, 893, 1010
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	106, 147, 1231, 1292
Bso31I	GGTCTC	1 cut(s)	575
Bsp119I	TTCGAA	3 cut(s)	120, 454, 1022
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	465
BspACI	CCGC	7 cut(s)	42, 65, 68, 632, 672, 1040, 1281
BspANI	GGCC	4 cut(s)	106, 147, 1231, 1292
BspCNI	CTCAG	2 cut(s)	151, 1171
BspLI	GGNNCC	3 cut(s)	210, 358, 617
BspPI	GGATC	7 cut(s)	191, 196, 203, 216, 470, 610, 623
BspT104I	TTCGAA	3 cut(s)	120, 454, 1022
BspTNI	GGTCTC	1 cut(s)	575
BsrDI	GCAATG	2 cut(s)	876, 1177
BsrFI	RCCGGY	1 cut(s)	701
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	3 cut(s)	742, 796, 907
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	4 cut(s)	352, 547, 565, 675
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	257, 354
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	6 cut(s)	23, 41, 122, 329, 413, 770
BstAUI	TGTACA	1 cut(s)	465
BstBAI	YACGTR	1 cut(s)	691
BstBI	TTCGAA	3 cut(s)	120, 454, 1022
BstC8I	GCNNGC	1 cut(s)	1290
BstDEI	CTNAG	6 cut(s)	138, 265, 489, 556, 1010, 1179
BstF5I	GGATG	2 cut(s)	727, 1309
BstHHI	GCGC	2 cut(s)	671, 1132
BstMAI	GTCTC	5 cut(s)	163, 393, 575, 893, 1010
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 153, 878, 1196, 1289
BstNI	CCWGG	2 cut(s)	257, 354
BstNSI	RCATGY	1 cut(s)	1210
BstSCI	CCNGG	5 cut(s)	204, 255, 352, 506, 523
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	1157, 1187
BstV2I	GAAGAC	1 cut(s)	1142
BstX2I	RGATCY	3 cut(s)	208, 475, 615
BstYI	RGATCY	3 cut(s)	208, 475, 615
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	4 cut(s)	106, 147, 1231, 1292
BtsCI	GGATG	2 cut(s)	727, 1309
BtsIMutI	CAGTG	1 cut(s)	768
Cac8I	GCNNGC	1 cut(s)	1290
CfoI	GCGC	2 cut(s)	671, 1132
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	2 cut(s)	798, 905
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	5 cut(s)	296, 425, 466, 705, 1105
CspAI	ACCGGT	1 cut(s)	701
CviAII	CATG	4 cut(s)	149, 620, 713, 1207
CviQI	GTAC	5 cut(s)	296, 425, 466, 705, 1105
DdeI	CTNAG	6 cut(s)	138, 265, 489, 556, 1010, 1179
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	6 cut(s)	23, 41, 122, 329, 413, 770
EarI	CTCTTC	6 cut(s)	23, 41, 122, 329, 413, 770
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	565
Eco147I	AGGCCT	1 cut(s)	1231
Eco31I	GGTCTC	1 cut(s)	575
Eco47I	GGWCC	2 cut(s)	798, 905
Eco57I	CTGAAG	2 cut(s)	845, 1154
EcoRII	CCWGG	2 cut(s)	255, 352
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	4 cut(s)	152, 623, 716, 1210
FalI	AAGNNNNNCTT	4 cut(s)	800, 832, 1003, 1035
FatI	CATG	4 cut(s)	148, 619, 712, 1206
Fnu4HI	GCNGC	7 cut(s)	66, 633, 672, 1041, 1146, 1176, 1281
FokI	GGATG	2 cut(s)	734, 1316
Fsp4HI	GCNGC	7 cut(s)	66, 633, 672, 1041, 1146, 1176, 1281
FspBI	CTAG	2 cut(s)	102, 1044
GlaI	GCGC	2 cut(s)	670, 1131
GluI	GCNGC	7 cut(s)	66, 633, 672, 1041, 1146, 1176, 1281
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	4 cut(s)	106, 147, 1231, 1292
HapII	CCGG	7 cut(s)	144, 206, 380, 428, 507, 525, 702
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	2 cut(s)	671, 1132
Hin1II	CATG	4 cut(s)	152, 623, 716, 1210
Hin6I	GCGC	2 cut(s)	669, 1130
HinP1I	GCGC	2 cut(s)	669, 1130
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	8 cut(s)	98, 112, 132, 245, 302, 658, 934, 1063
HpaII	CCGG	7 cut(s)	144, 206, 380, 428, 507, 525, 702
HphI	GGTGA	3 cut(s)	394, 691, 1177
Hpy166II	GTNNAC	2 cut(s)	296, 513
Hpy188III	TCNNGA	4 cut(s)	335, 415, 805, 1237
Hpy8I	GTNNAC	2 cut(s)	296, 513
Hpy99I	CGWCG	2 cut(s)	26, 98
HpyAV	CCTTC	5 cut(s)	442, 509, 643, 811, 1291
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4IV	ACGT	4 cut(s)	312, 601, 690, 1003
HpyCH4V	TGCA	3 cut(s)	51, 1175, 1190
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 153, 878, 1196, 1289
HpyF3I	CTNAG	6 cut(s)	138, 265, 489, 556, 1010, 1179
HpySE526I	ACGT	4 cut(s)	312, 601, 690, 1003
Hsp92II	CATG	4 cut(s)	152, 623, 716, 1210
HspAI	GCGC	2 cut(s)	669, 1130
Lsp1109I	GCAGC	2 cut(s)	1157, 1187
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	2 cut(s)	102, 1044
MaeII	ACGT	4 cut(s)	312, 601, 690, 1003
MaeIII	GTNAC	3 cut(s)	551, 697, 925
MflI	RGATCY	3 cut(s)	208, 475, 615
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	6 cut(s)	307, 418, 438, 469, 1058, 1076
MlyI	GAGTC	1 cut(s)	1057
MmeI	TCCRAC	1 cut(s)	117
MroXI	GAANNNNTTC	2 cut(s)	249, 812
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	1 cut(s)	1211
MspA1I	CMGCKG	1 cut(s)	1178
MspI	CCGG	7 cut(s)	144, 206, 380, 428, 507, 525, 702
MspR9I	CCNGG	5 cut(s)	206, 257, 354, 508, 525
MvaI	CCWGG	2 cut(s)	257, 354
MwoI	GCNNNNNNNGC	5 cut(s)	57, 153, 878, 1196, 1289
NciI	CCSGG	3 cut(s)	206, 508, 525
NlaIII	CATG	4 cut(s)	152, 623, 716, 1210
NlaIV	GGNNCC	3 cut(s)	210, 358, 617
NmeAIII	GCCGAG	2 cut(s)	700, 1309
NmuCI	GTSAC	1 cut(s)	697
NspI	RCATGY	1 cut(s)	1210
NspV	TTCGAA	3 cut(s)	120, 454, 1022
PceI	AGGCCT	1 cut(s)	1231
PciI	ACATGT	1 cut(s)	1206
PcsI	WCGNNNNNNNCGW	2 cut(s)	197, 420
PdmI	GAANNNNTTC	2 cut(s)	249, 812
PfeI	GAWTC	7 cut(s)	98, 112, 132, 245, 302, 658, 934
PfoI	TCCNGGA	1 cut(s)	204
PinAI	ACCGGT	1 cut(s)	701
PkrI	GCNGC	7 cut(s)	67, 634, 673, 1042, 1147, 1177, 1282
PleI	GAGTC	1 cut(s)	1057
PpsI	GAGTC	1 cut(s)	1057
Ppu21I	YACGTR	1 cut(s)	691
PscI	ACATGT	1 cut(s)	1206
PsiI	TTATAA	1 cut(s)	1152
Psp6I	CCWGG	2 cut(s)	255, 352
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	2 cut(s)	255, 352
PspN4I	GGNNCC	3 cut(s)	210, 358, 617
PspPI	GGNCC	2 cut(s)	798, 905
PsuI	RGATCY	3 cut(s)	208, 475, 615
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	5 cut(s)	297, 426, 467, 706, 1106
RsaNI	GTAC	5 cut(s)	296, 425, 466, 705, 1105
RseI	CAYNNNNRTG	1 cut(s)	1211
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	7 cut(s)	66, 633, 672, 1041, 1146, 1176, 1281
Sau96I	GGNCC	2 cut(s)	798, 905
SchI	GAGTC	1 cut(s)	1057
ScrFI	CCNGG	5 cut(s)	206, 257, 354, 508, 525
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	171
SfuI	TTCGAA	3 cut(s)	120, 454, 1022
SinI	GGWCC	2 cut(s)	798, 905
SmiMI	CAYNNNNRTG	1 cut(s)	1211
Sse9I	AATT	6 cut(s)	307, 418, 438, 469, 1058, 1076
SseBI	AGGCCT	1 cut(s)	1231
SsiI	CCGC	7 cut(s)	42, 65, 68, 632, 672, 1040, 1281
SspMI	CTAG	2 cut(s)	102, 1044
StuI	AGGCCT	1 cut(s)	1231
StyD4I	CCNGG	5 cut(s)	204, 255, 352, 506, 523
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	1 cut(s)	772
TaiI	ACGT	4 cut(s)	315, 604, 693, 1006
TaqI	TCGA	9 cut(s)	120, 215, 273, 300, 443, 454, 998, 1022, 1236
TasI	AATT	6 cut(s)	307, 418, 438, 469, 1058, 1076
TatI	WGTACW	3 cut(s)	295, 465, 1104
TauI	GCSGC	5 cut(s)	68, 635, 674, 1043, 1283
TfiI	GAWTC	7 cut(s)	98, 112, 132, 245, 302, 658, 934
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	2 cut(s)	1145, 1175
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	4 cut(s)	461, 599, 662, 1278
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	1 cut(s)	775
VpaK11BI	GGWCC	2 cut(s)	798, 905
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	1 cut(s)	1210
XmnI	GAANNNNTTC	2 cut(s)	249, 812
XspI	CTAG	2 cut(s)	102, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.