Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012152

Physical Location & Seq

Genomic Coordinates Forward (+)

6144855 .. 6146603

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCGAAAATGCCCCTCTCCGTCGTCGTCTTCCTCCTCTTCTCCGCCGCTTTCCTCGCCGTATCTATGGCGGAGATCAAATCACTCGTCATCTCCGATGACGCTCGTCCGATGATCCTCTTCGAGAAATTCGGATTCACACACACCGGCCACGTCACGGTCTCAATCTCCTCCGTCTCCGTCGTGTCCACTTCCTCAGATCCGAATCCAGAAGCATCGCGTCTCGGATTCTTCCTCCTCTCCGAAGAATCTCTTCTCCAGGTCCTCCTCGAGATCCAACAGAACCCTAGATTCTGCGTTCTAGATTCGCACTACGTCACTCATCTCTTCACATTCAGAGATCTATCTCCTCCTCCAAACTCCAGATTCAACCAATCTTACCCAGTCACTTCCCCAAACGAATACTCTCTCTTCTTCGCGAATTGTGTCCCTGAAACCAAAGTTTCCATGGCGGTTCGTACAGAGATGTATAACAAAGATCCAAACGGATCTAAAGACTATTTACCAGCTGGATCTACTCAATTACCAACTCTCTACTCTTTCTTCTTCCTCTGCTACGTTGCTTTCCTCGGTTTCTGGAGCTACACTTGCTGGACTAACAAACAAACCGTTCATCGGATCCATCTTCTCATGGCAGGTCTTCTTCTTATCAAATCGTTGAATCTCATCTGTGCAGCTGAAGATAAACATTACGTGAAGATCACTGGAACGCCACATGGCTGGGATATTCTCTTCTACATCTTCCAATTCATCCGTGTTGTTCTTCTCTTCACCGTCATCATCTTGATCGGAACTGGCTGGTCGTTTTTGAAACCTTTCTTGCAGGAGAAGGAGAAGAATGTGTTGATCATTGTGATCCCACTTCAGGTATTAGCCAACATTGCTTCCATTGTCATTGGTGAAACTGGACCTTTTATCAAAGATTGGGTTACATGGAACCAAGTGTTTTTGCTTGTGGATATCATCTGTTGCTGTGCTATTATCTTCCCGATTGTTTGGTCGATTCGATCTTTGAGAGAAACCTCGAAAACCGATGGTAAAGCTGCGAGGAACTTGTCGAAGCTCACGTTGTTTAGACAGTTCTACATTGTTGTCATCGGATATCTTTACTTCACGAGAATCGTGGTGTTTGCGCTTAAAACCATTGCGGCTTATAAGTACCAGTGGGTGAGCTTTGCAGCTGAGGAGATTGTGAGTTTGGTGTTCTATGTGATCATGTTTCATATGTTTAGGCCTGAGGAGAAGAATGAGTACTTTGCTGTTGATGATGATGAAGAAGAAGCTGCTGCTTTGGCCCTTAGGGACGAAGAGTTTGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016192 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0032050 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0070013 GO:0072583 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

440

Amino Acids

50.24

Weight (kDa)

5.89

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAND6-7_N	PF21904	27 - 158	1.6e-65	CAND6/7, N-terminal domain
GOST_TM	PF06814	176 - 416	5.7e-30	GOST, seven transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09570 AT5G18520
fragaria_vesca	FvH4_6g14730
malus_domestica	MD04G1116700.v1.1 MD12G1132400.v1.1
prunus_persica	Prupe.6G246500_v2.0.a1
pyrus_communis	pycom04g10650
rosa_chinensis	RchiOBHm_Chr3g0467951
rosa_laevigata	RLG00000024464
rosa_multiflora	Rmu_sc0001793.1_g000057 Rmu_sc0006017.1_g000004 Rmu_sc0034877.1_g000003
rosa_roxburghii	Rroxscaffold_6G00413260
rosa_rugosa	Rorug03G0090600
rosa_samantha	Rh3AG139300 Rh3BG160800 Rh3CG160700 Rh3DG161300
rosa_wichuraiana	Rw3G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1155
Acc36I	ACCTGC	1 cut(s)	626
AccII	CGCG	2 cut(s)	220, 419
AciI	CCGC	5 cut(s)	45, 48, 71, 452, 1148
AclWI	GGATC	9 cut(s)	109, 194, 268, 473, 496, 520, 613, 626, 850
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	2 cut(s)	699, 848
AfaI	GTAC	3 cut(s)	460, 1160, 1253
AfiI	CCNNNNNNNGG	3 cut(s)	157, 615, 865
AgsI	TTSAA	3 cut(s)	370, 661, 811
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	9 cut(s)	509, 582, 677, 1043, 1063, 1173, 1181, 1283, 1318
AluI	AGCT	9 cut(s)	509, 582, 677, 1043, 1063, 1173, 1181, 1283, 1318
Alw26I	GTCTC	3 cut(s)	166, 181, 227
AlwI	GGATC	9 cut(s)	109, 194, 268, 473, 496, 520, 613, 626, 850
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	3 cut(s)	148, 1232, 1293
ApeKI	GCWGC	5 cut(s)	674, 1043, 1178, 1283, 1286
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	3 cut(s)	72, 104, 1295
Asp700I	GAANNNNTTC	2 cut(s)	252, 815
AspLEI	GCGC	1 cut(s)	1135
AspS9I	GGNCC	3 cut(s)	262, 908, 1294
AsuHPI	GGTGA	3 cut(s)	763, 911, 1180
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	262, 908
AxyI	CCTNAGG	2 cut(s)	1236, 1298
BamHI	GGATCC	1 cut(s)	618
BarI	GAAGNNNNNNTAC	2 cut(s)	1235, 1267
BauI	CACGAG	1 cut(s)	1114
BbsI	GAAGAC	2 cut(s)	22, 632
BbvCI	CCTCAGC	1 cut(s)	1182
BbvI	GCAGC	5 cut(s)	686, 1030, 1190, 1270, 1273
BccI	CCATC	2 cut(s)	630, 1028
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	2 cut(s)	846, 1212
BcoDI	GTCTC	3 cut(s)	166, 181, 227
BfaI	CTAG	2 cut(s)	288, 302
BfuAI	ACCTGC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	7 cut(s)	48, 675, 1044, 1149, 1179, 1284, 1287
BlsI	GCNGC	7 cut(s)	49, 676, 1045, 1150, 1180, 1285, 1288
BmcAI	AGTACT	1 cut(s)	1253
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	2 cut(s)	262, 908
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	262, 908, 1294
BmiI	GGNNCC	2 cut(s)	620, 938
BmrFI	CCNGG	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	377
BoxI	GACNNNNGTC	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	22, 632
BpmI	CTGGAG	3 cut(s)	242, 346, 598
Bpu10I	CCTNAGC	1 cut(s)	1182
BsaAI	YACGTR	1 cut(s)	694
BsaBI	GATNNNNATC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	447, 568
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 615, 865
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	5 cut(s)	383, 709, 799, 910, 1162
Bse21I	CCTNAGG	2 cut(s)	1236, 1298
Bse3DI	GCAATG	2 cut(s)	879, 1143
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	447, 568
BseGI	GGATG	1 cut(s)	750
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	3 cut(s)	157, 615, 865
BseMI	GCAATG	2 cut(s)	879, 1143
BseMII	CTCAG	3 cut(s)	210, 1173, 1227
BseNI	ACTGG	5 cut(s)	383, 709, 799, 910, 1162
BseRI	GAGGAG	8 cut(s)	26, 160, 227, 257, 339, 342, 1199, 1253
BseXI	GCAGC	5 cut(s)	686, 1030, 1190, 1270, 1273
BseYI	CCCAGC	1 cut(s)	720
BsgI	GTGCAG	1 cut(s)	693
Bsh1236I	CGCG	2 cut(s)	220, 419
BshFI	GGCC	3 cut(s)	150, 1234, 1295
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	413, 1316
BslI	CCNNNNNNNGG	3 cut(s)	157, 615, 865
BsmAI	GTCTC	3 cut(s)	166, 181, 227
BsmBI	CGTCTC	2 cut(s)	181, 227
BsmFI	GGGAC	2 cut(s)	413, 1316
BsnI	GGCC	3 cut(s)	150, 1234, 1295
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	447
Bsp68I	TCGCGA	1 cut(s)	419
BspACI	CCGC	5 cut(s)	45, 48, 71, 452, 1148
BspANI	GGCC	3 cut(s)	150, 1234, 1295
BspCNI	CTCAG	3 cut(s)	209, 1174, 1228
BspFNI	CGCG	2 cut(s)	220, 419
BspLI	GGNNCC	2 cut(s)	620, 938
BspMI	ACCTGC	1 cut(s)	626
BspPI	GGATC	9 cut(s)	109, 194, 268, 473, 496, 520, 613, 626, 850
BspTNI	GGTCTC	1 cut(s)	166
BsrDI	GCAATG	2 cut(s)	879, 1143
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	5 cut(s)	383, 709, 799, 910, 1162
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	447, 568
BssSI	CACGAG	1 cut(s)	1114
BssT1I	CCWWGG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	1114
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	4 cut(s)	160, 610, 775, 1080
Bst6I	CTCTTC	8 cut(s)	44, 125, 258, 332, 416, 737, 773, 1302
BstBAI	YACGTR	1 cut(s)	694
BstDEI	CTNAG	4 cut(s)	196, 1182, 1236, 1298
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	750
BstFNI	CGCG	2 cut(s)	220, 419
BstHHI	GCGC	1 cut(s)	1135
BstMAI	GTCTC	3 cut(s)	166, 181, 227
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 588, 881, 1292
BstNI	CCWGG	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	258
BstUI	CGCG	2 cut(s)	220, 419
BstV1I	GCAGC	5 cut(s)	686, 1030, 1190, 1270, 1273
BstV2I	GAAGAC	2 cut(s)	22, 632
BstX2I	RGATCY	7 cut(s)	199, 273, 340, 478, 488, 512, 618
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstYI	RGATCY	7 cut(s)	199, 273, 340, 478, 488, 512, 618
Bsu36I	CCTNAGG	2 cut(s)	1236, 1298
BsuRI	GGCC	3 cut(s)	150, 1234, 1295
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	750
BtsIMutI	CAGTG	2 cut(s)	702, 1169
BtuMI	TCGCGA	1 cut(s)	419
BveI	ACCTGC	1 cut(s)	626
CfoI	GCGC	1 cut(s)	1135
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	262, 908, 1294
CseI	GACGC	2 cut(s)	110, 209
Csp6I	GTAC	3 cut(s)	459, 1159, 1252
CviAII	CATG	5 cut(s)	448, 631, 716, 933, 1216
CviQI	GTAC	3 cut(s)	459, 1159, 1252
DdeI	CTNAG	4 cut(s)	196, 1182, 1236, 1298
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	8 cut(s)	44, 125, 258, 332, 416, 737, 773, 1302
EarI	CTCTTC	8 cut(s)	44, 125, 258, 332, 416, 737, 773, 1302
EciI	GGCGGA	2 cut(s)	34, 86
Eco130I	CCWWGG	1 cut(s)	447
Eco147I	AGGCCT	1 cut(s)	1234
Eco31I	GGTCTC	1 cut(s)	166
Eco32I	GATATC	2 cut(s)	961, 1103
Eco47I	GGWCC	2 cut(s)	262, 908
Eco57I	CTGAAG	2 cut(s)	699, 848
Eco81I	CCTNAGG	2 cut(s)	1236, 1298
Eco88I	CYCGRG	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	2 cut(s)	961, 1103
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	2 cut(s)	181, 227
FaeI	CATG	5 cut(s)	451, 634, 719, 936, 1219
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	2 cut(s)	413, 1316
FatI	CATG	5 cut(s)	447, 630, 715, 932, 1215
FauNDI	CATATG	1 cut(s)	1224
FbaI	TGATCA	2 cut(s)	846, 1212
Fnu4HI	GCNGC	7 cut(s)	48, 675, 1044, 1149, 1179, 1284, 1287
FokI	GGATG	1 cut(s)	737
Fsp4HI	GCNGC	7 cut(s)	48, 675, 1044, 1149, 1179, 1284, 1287
FspBI	CTAG	2 cut(s)	288, 302
GlaI	GCGC	1 cut(s)	1134
GluI	GCNGC	7 cut(s)	48, 675, 1044, 1149, 1179, 1284, 1287
GsaI	CCCAGC	1 cut(s)	724
GsuI	CTGGAG	3 cut(s)	242, 346, 598
HaeIII	GGCC	3 cut(s)	150, 1234, 1295
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	2 cut(s)	110, 209
HhaI	GCGC	1 cut(s)	1135
Hin1II	CATG	5 cut(s)	451, 634, 719, 936, 1219
Hin6I	GCGC	1 cut(s)	1133
HinP1I	GCGC	1 cut(s)	1133
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	3 cut(s)	763, 911, 1180
Hpy166II	GTNNAC	1 cut(s)	189
Hpy8I	GTNNAC	1 cut(s)	189
Hpy99I	CGWCG	3 cut(s)	26, 29, 185
HpyAV	CCTTC	1 cut(s)	823
HpyCH4III	ACNGT	4 cut(s)	160, 610, 775, 1080
HpyCH4IV	ACGT	5 cut(s)	153, 315, 558, 693, 1067
HpyCH4V	TGCA	3 cut(s)	674, 823, 1178
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 588, 881, 1292
HpyF3I	CTNAG	4 cut(s)	196, 1182, 1236, 1298
HpySE526I	ACGT	5 cut(s)	153, 315, 558, 693, 1067
Hsp92II	CATG	5 cut(s)	451, 634, 719, 936, 1219
HspAI	GCGC	1 cut(s)	1133
Ksp22I	TGATCA	2 cut(s)	846, 1212
LmnI	GCTCC	1 cut(s)	579
Lsp1109I	GCAGC	5 cut(s)	686, 1030, 1190, 1270, 1273
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	288, 302
MaeII	ACGT	5 cut(s)	153, 315, 558, 693, 1067
MaeIII	GTNAC	4 cut(s)	154, 316, 385, 928
MflI	RGATCY	7 cut(s)	199, 273, 340, 478, 488, 512, 618
MluCI	AATT	4 cut(s)	128, 421, 521, 746
MmeI	TCCRAC	1 cut(s)	301
MroXI	GAANNNNTTC	2 cut(s)	252, 815
MseI	TTAA	1 cut(s)	1137
MspA1I	CMGCKG	3 cut(s)	509, 677, 1181
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	220, 419
MwoI	GCNNNNNNNGC	4 cut(s)	56, 588, 881, 1292
NcoI	CCATGG	1 cut(s)	447
NdeI	CATATG	1 cut(s)	1224
NlaIII	CATG	5 cut(s)	451, 634, 719, 936, 1219
NlaIV	GGNNCC	2 cut(s)	620, 938
NmuCI	GTSAC	3 cut(s)	154, 316, 385
NruI	TCGCGA	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	1234
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 1064
PdmI	GAANNNNTTC	2 cut(s)	252, 815
PkrI	GCNGC	7 cut(s)	49, 676, 1045, 1150, 1180, 1285, 1288
Ppu21I	YACGTR	1 cut(s)	694
PpuMI	RGGWCCY	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	1155
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	620, 938
PspPI	GGNCC	3 cut(s)	262, 908, 1294
PspPPI	RGGWCCY	1 cut(s)	262
PsuI	RGATCY	7 cut(s)	199, 273, 340, 478, 488, 512, 618
PvuII	CAGCTG	3 cut(s)	509, 677, 1181
RruI	TCGCGA	1 cut(s)	419
RsaI	GTAC	3 cut(s)	460, 1160, 1253
RsaNI	GTAC	3 cut(s)	459, 1159, 1252
SaqAI	TTAA	1 cut(s)	1137
SatI	GCNGC	7 cut(s)	48, 675, 1044, 1149, 1179, 1284, 1287
Sau96I	GGNCC	3 cut(s)	262, 908, 1294
ScaI	AGTACT	1 cut(s)	1253
ScrFI	CCNGG	1 cut(s)	260
SfaNI	GCATC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	262, 908
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	128, 421, 521, 746
SseBI	AGGCCT	1 cut(s)	1234
SsiI	CCGC	5 cut(s)	45, 48, 71, 452, 1148
SspMI	CTAG	2 cut(s)	288, 302
StuI	AGGCCT	1 cut(s)	1234
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	4 cut(s)	160, 610, 775, 1080
TaiI	ACGT	5 cut(s)	156, 318, 561, 696, 1070
TaqI	TCGA	6 cut(s)	123, 270, 1001, 1006, 1025, 1058
TasI	AATT	4 cut(s)	128, 421, 521, 746
TatI	WGTACW	1 cut(s)	1251
TauI	GCSGC	2 cut(s)	50, 1151
Tru1I	TTAA	1 cut(s)	1137
Tru9I	TTAA	1 cut(s)	1137
TscAI	CASTG	2 cut(s)	709, 1169
TseFI	GTSAC	3 cut(s)	154, 316, 385
TseI	GCWGC	5 cut(s)	674, 1043, 1178, 1283, 1286
Tsp45I	GTSAC	3 cut(s)	154, 316, 385
TspDTI	ATGAA	4 cut(s)	602, 739, 1211, 1287
TspGWI	ACGGA	5 cut(s)	10, 163, 169, 501, 743
TspRI	CASTG	2 cut(s)	709, 1169
VpaK11BI	GGWCC	2 cut(s)	262, 908
XapI	RAATTY	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XhoI	CTCGAG	1 cut(s)	269
XmnI	GAANNNNTTC	2 cut(s)	252, 815
XspI	CTAG	2 cut(s)	288, 302
ZrmI	AGTACT	1 cut(s)	1253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.