Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021906

Physical Location & Seq

Genomic Coordinates Forward (+)

3479673 .. 3480629

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGACGTCATCTTCACCGTCTCCACAAGCCTCGATGCTTTTGTACTGGCACGAGAATCAATACGACGACCGGAACTTCCAGATTCATGGCCGGACACTCTTCTTCGCCTTAGCTTTATTCTCCGTCGTGCTCTTCTTCGCACTACTCACTCTCTACATCCACCGGAACTGCCTCCCCCGGGATTCTATCAATCTCCACGCGTCCTCTCCCGATCGACTCACGCGTTGCCGTAGCGGAGGGCTTGATCCGGCGGAGATTCGGAGCTTGCCGGTGGTGCTTTGCCGGAGAGAAAGGGCGGAGGAGGAGGAGGAGAAGGAGTGTTGTATATGTCTAGGTGGTTTCGAAGAAGGAGAGAAGATGAAAGTGCTTCCTCCGTGTAGCCATTGTTACCACTGCGAATGTGTGGATCGGTGGCTTAAAACCGAGTCGAGTTGTCCGCTCTGCCGAGTCTCCATCCGTGTCGACTCGTCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

158

Amino Acids

18.09

Weight (kDa)

6.06

Isoelectric Point (pI)

76.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	105 - 149	3.4e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	106 - 149	3.6e-14	Ring finger domain
zf-RING_11	PF17123	106 - 135	6.9e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11110
malus_domestica	MD03G1064400.v1.1 MD11G1068200.v1.1
prunus_persica	Prupe.6G053600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccBSI	CCGCTC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	2 cut(s)	200, 223
AciI	CCGC	4 cut(s)	234, 251, 296, 437
AclWI	GGATC	2 cut(s)	239, 414
AcoI	YGGCCR	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflIII	ACRYGT	2 cut(s)	198, 221
AluBI	AGCT	3 cut(s)	113, 264, 474
AluI	AGCT	3 cut(s)	113, 264, 474
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	24, 454
AlwI	GGATC	2 cut(s)	239, 414
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	1 cut(s)	88
AsuC2I	CCSGG	2 cut(s)	178, 179
AsuHPI	GGTGA	1 cut(s)	6
AsuII	TTCGAA	1 cut(s)	342
AvaI	CYCGRG	1 cut(s)	177
BauI	CACGAG	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	132
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	1 cut(s)	213
BcnI	CCSGG	2 cut(s)	178, 179
BcoDI	GTCTC	2 cut(s)	24, 454
BfaI	CTAG	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	178, 179
BmeT110I	CYCGRG	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	178, 179
BmsI	GCATC	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	178, 179
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	176, 177
BsaWI	WCCGGW	2 cut(s)	69, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	176, 177
BseGI	GGATG	2 cut(s)	156, 453
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	4 cut(s)	314, 317, 320, 323
Bsh1236I	CGCG	2 cut(s)	200, 223
Bsh1285I	CGRYCG	2 cut(s)	70, 214
BshFI	GGCC	1 cut(s)	90
BsiEI	CGRYCG	2 cut(s)	70, 214
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	7 cut(s)	70, 91, 163, 178, 248, 269, 283
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	24, 454
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	177
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	211, 244, 406
BspACI	CCGC	4 cut(s)	234, 251, 296, 437
BspANI	GGCC	1 cut(s)	90
BspFNI	CGCG	2 cut(s)	200, 223
BspPI	GGATC	2 cut(s)	239, 414
BspQI	GCTCTTC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	342
BsrBI	CCGCTC	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	176, 177
BssMI	GATC	3 cut(s)	211, 244, 406
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	2 cut(s)	104, 137
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	156, 453
BstFNI	CGCG	2 cut(s)	200, 223
BstKTI	GATC	3 cut(s)	214, 247, 409
BstMAI	GTCTC	2 cut(s)	24, 454
BstMBI	GATC	3 cut(s)	211, 244, 406
BstMCI	CGRYCG	2 cut(s)	70, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	176, 177
BstUI	CGCG	2 cut(s)	200, 223
BstXI	CCANNNNNNTGG	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	156, 453
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	268
Cfr9I	CCCGGG	1 cut(s)	177
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	8 cut(s)	29, 90, 113, 241, 264, 381, 415, 474
CviKI_1	RGCY	8 cut(s)	29, 90, 113, 241, 264, 381, 415, 474
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	3 cut(s)	213, 246, 408
DpnII	GATC	3 cut(s)	211, 244, 406
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	104, 137
EarI	CTCTTC	2 cut(s)	104, 137
EciI	GGCGGA	2 cut(s)	266, 311
Eco88I	CYCGRG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	1 cut(s)	89
FaiI	YATR	3 cut(s)	87, 326, 328
FatI	CATG	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	462
FokI	GGATG	2 cut(s)	143, 440
FspBI	CTAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	7 cut(s)	70, 91, 163, 178, 248, 269, 283
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	8 cut(s)	55, 82, 182, 216, 256, 425, 447, 464
HpaII	CCGG	7 cut(s)	70, 91, 163, 178, 248, 269, 283
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	2 cut(s)	79, 209
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	2 cut(s)	68, 128
HpyAV	CCTTC	2 cut(s)	307, 341
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	5
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	211, 244, 406
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	9 cut(s)	31, 83, 92, 104, 176, 191, 261, 282, 296
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	3 cut(s)	213, 246, 408
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	3 cut(s)	211, 244, 406
MboII	GAAGA	7 cut(s)	3, 91, 94, 124, 127, 356, 367
MhlI	GDGCHC	1 cut(s)	132
MluI	ACGCGT	2 cut(s)	198, 221
MlyI	GAGTC	4 cut(s)	210, 434, 456, 458
MnlI	CCTC	9 cut(s)	40, 182, 214, 230, 292, 295, 298, 301, 381
MseI	TTAA	1 cut(s)	417
MspI	CCGG	7 cut(s)	70, 91, 163, 178, 248, 269, 283
MspR9I	CCNGG	2 cut(s)	178, 179
MvnI	CGCG	2 cut(s)	200, 223
MwoI	GCNNNNNNNGC	1 cut(s)	274
NciI	CCSGG	2 cut(s)	178, 179
NdeII	GATC	3 cut(s)	211, 244, 406
NlaIII	CATG	1 cut(s)	89
NmeAIII	GCCGAG	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	55, 82, 182, 256
Ple19I	CGATCG	1 cut(s)	214
PleI	GAGTC	4 cut(s)	210, 433, 455, 458
PpsI	GAGTC	4 cut(s)	210, 433, 455, 458
PvuI	CGATCG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SalI	GTCGAC	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	417
Sau3AI	GATC	3 cut(s)	211, 244, 406
SchI	GAGTC	4 cut(s)	210, 434, 456, 458
ScrFI	CCNGG	2 cut(s)	178, 179
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	5 cut(s)	8, 115, 266, 337, 476
SfaNI	GCATC	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	342
SmaI	CCCGGG	1 cut(s)	179
SsiI	CCGC	4 cut(s)	234, 251, 296, 437
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	176, 177
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	5 cut(s)	32, 214, 342, 428, 462
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	4 cut(s)	55, 82, 182, 256
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	398
TspDTI	ATGAA	2 cut(s)	74, 374
TspGWI	ACGGA	3 cut(s)	112, 363, 446
TspMI	CCCGGG	1 cut(s)	177
TspRI	CASTG	1 cut(s)	398
XmaI	CCCGGG	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.