Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0021906

Physical Location & Seq

Genomic Coordinates Forward (+)

5892245 .. 5892739

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1068200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCGTCCGAAAAATCACCACTCTTTGAGTGGCATTTCAGTGATCTCAACCACTCCAACTTCCACATCGACAGCCGAGGACTCTTACTAGTCCTCTTCTTCTTCTCTCTGATCTTCATCATCACTACCCTATCCTTCTATGCTCGTTGGGCTTGTATCAGAGGTCGTCTCTCAACAACAACCTCTAGGGCTACAAATATTGCATCTTTGCCACAAGTTCATCAGTCGCTAGGGCTCGATGCTGCCGCCATTGATAACTTGCCGGTTGTCTTGCATCGATCGGTGGTAATAGCTAACCCTAGTATTGTTCTTGATGTTGAAACCATTGATATTGAGTGTTGTATTTGTCTTGGAGTTTTTGAAGGAGAAGAGAAGGTTAAGGTGTTGCCAAAGTGCCAACATACATATCATTCTGAGTGTGTGGATAAGTGGCTGACCGTTCAGTCTAGCTGCCCGCTTTGTAGATTGTCCCTCCGAGTCATCACCTCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

165

Amino Acids

18.39

Weight (kDa)

6.36

Isoelectric Point (pI)

57.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	112 - 155	4.2e-14	Ring finger domain
zf-RING_11	PF17123	112 - 141	2.9e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	112 - 154	1.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	113 - 155	3.8e-09	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	119 - 159	1.7e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0021906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11110
malus_domestica	MD03G1064400.v1.1 MD11G1068200.v1.1
prunus_persica	Prupe.6G053600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
AciI	CCGC	2 cut(s)	246, 455
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	320, 362
AhlI	ACTAGT	1 cut(s)	88
AluBI	AGCT	2 cut(s)	293, 450
AluI	AGCT	2 cut(s)	293, 450
Alw26I	GTCTC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	242, 450
AsuHPI	GGTGA	2 cut(s)	9, 475
BanII	GRGCYC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	229, 437
BcoDI	GTCTC	1 cut(s)	173
BcuI	ACTAGT	1 cut(s)	88
BfaI	CTAG	5 cut(s)	89, 186, 230, 300, 447
BisI	GCNGC	3 cut(s)	243, 246, 451
BlsI	GCNGC	3 cut(s)	244, 247, 452
BmsI	GCATC	3 cut(s)	212, 229, 283
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
Bsa29I	ATCGAT	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	262
Bse8I	GATNNNNATC	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	405
BseXI	GCAGC	2 cut(s)	229, 437
Bsh1285I	CGRYCG	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	277
BsiEI	CGRYCG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	43, 111, 278
BspACI	CCGC	2 cut(s)	246, 455
BspCNI	CTCAG	1 cut(s)	406
BspDI	ATCGAT	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	3 cut(s)	43, 111, 278
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	2 cut(s)	101, 363
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	414
BstKTI	GATC	3 cut(s)	46, 114, 281
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	3 cut(s)	43, 111, 278
BstMCI	CGRYCG	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	229, 437
Bsu15I	ATCGAT	1 cut(s)	277
BsuTUI	ATCGAT	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	277
CviJI	RGCY	7 cut(s)	75, 152, 191, 235, 293, 433, 450
CviKI_1	RGCY	7 cut(s)	75, 152, 191, 235, 293, 433, 450
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	3 cut(s)	45, 113, 280
DpnII	GATC	3 cut(s)	43, 111, 278
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	101, 363
EarI	CTCTTC	2 cut(s)	101, 363
Eco24I	GRGCYC	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	173
FaiI	YATR	3 cut(s)	141, 402, 406
FaqI	GGGAC	1 cut(s)	454
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	3 cut(s)	243, 246, 451
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	243, 246, 451
FspBI	CTAG	5 cut(s)	89, 186, 230, 300, 447
GluI	GCNGC	3 cut(s)	243, 246, 451
HapII	CCGG	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	81, 477
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	9, 475
Hpy188I	TCNGA	5 cut(s)	10, 111, 161, 415, 476
Hpy188III	TCNNGA	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	145, 356, 367
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	2 cut(s)	203, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	414
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	43, 111, 278
LpnPI	CCDG	1 cut(s)	276
Lsp1109I	GCAGC	2 cut(s)	229, 437
LweI	GCATC	3 cut(s)	212, 229, 283
MaeI	CTAG	5 cut(s)	89, 186, 230, 300, 447
MalI	GATC	3 cut(s)	45, 113, 280
MboI	GATC	3 cut(s)	43, 111, 278
MboII	GAAGA	5 cut(s)	88, 91, 94, 106, 380
MhlI	GDGCHC	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	75, 486
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	71, 104, 155, 193, 482
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	3 cut(s)	43, 111, 278
NmeAIII	GCCGAG	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	244, 247, 452
Ple19I	CGATCG	1 cut(s)	281
PleI	GAGTC	2 cut(s)	75, 485
PpsI	GAGTC	2 cut(s)	75, 485
PvuI	CGATCG	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	243, 246, 451
Sau3AI	GATC	3 cut(s)	43, 111, 278
SchI	GAGTC	2 cut(s)	75, 486
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	7 cut(s)	166, 185, 295, 378, 384, 452, 488
SfaNI	GCATC	3 cut(s)	212, 229, 283
SmiMI	CAYNNNNRTG	1 cut(s)	39
SpeI	ACTAGT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	246, 455
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	5 cut(s)	89, 186, 230, 300, 447
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	3 cut(s)	69, 237, 277
TauI	GCSGC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	2 cut(s)	242, 450
TspDTI	ATGAA	2 cut(s)	106, 209
TspRI	CASTG	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XspI	CTAG	5 cut(s)	89, 186, 230, 300, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.