Prupe.6G053600_v2.0.a1

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
3763412 .. 3763894
483 bp
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UTR
Exon/CDS
Intron
Prupe.6G053600.1

Sequence Viewer

Length: 483 bp
ATGGCTTCCCAAGACTCAAAACTCTTTGAGTGGCATTTCACCGACCTCAACCACTCTGACTTCCACATCTACAGCCGAGGCCTCTTGCTACTCCTCCTATTCTTCTCTCTCATCTTCACCATAACCATCTTCTCGTTTCATGCTTATTGGGCTTGTGTAGGTCGTCTCTCAACAACAACAACCTCCATGGCTGCAAATTCTGCGTCATCAATGCACTCACATGGGCTTGATGCTGCCACCATTGAAAGCTTGCCAGTTTATTTGCATCGGTCGGTGGTCATCGCTAACCCTAATGCCGGTGACATTGAAGCCACTGAAATTGAATGCTGTATTTGTCTTGGGGTATTTGAAGGAGAAGAGAAGGTCAAGGTGTTACCAAAGTGCCACCATGCATATCATTCTGAGTGCGTGGACAAGTGGCTCAGCGTTCAGTCAAGCTGCCCGCTTTGTAGATTGTCCCTCCGAGTCATTAACTCTCTCTAG

Protein Analysis

161

Amino Acids

17.87

Weight (kDa)

6.02

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11110
malus_domestica MD03G1064400.v1.1 MD11G1068200.v1.1
prunus_persica Prupe.6G053600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 443
AcsI RAATTY 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 4 cut(s) 245, 308, 323, 350
AluBI AGCT 2 cut(s) 249, 438
AluI AGCT 2 cut(s) 249, 438
Alw26I GTCTC 1 cut(s) 170
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 191, 233, 438
ApoI RAATTY 1 cut(s) 196
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AsuHPI GGTGA 3 cut(s) 31, 109, 311
BbvI GCAGC 3 cut(s) 178, 220, 425
BccI CCATC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 481
BfmI CTRYAG 1 cut(s) 70
BisI GCNGC 3 cut(s) 192, 234, 439
BlpI GCTNAGC 1 cut(s) 422
BlsI GCNGC 3 cut(s) 193, 235, 440
BmsI GCATC 2 cut(s) 220, 274
Bpu1102I GCTNAGC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 76, 186
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 76, 186
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 393, 436
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 178, 220, 425
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 272
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 442
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 81
Bsp1720I GCTNAGC 1 cut(s) 422
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 1 cut(s) 443
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 394, 435
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 76, 186
BssT1I CCWWGG 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 251, 443
BstDEI CTNAG 2 cut(s) 402, 422
BstDSI CCRYGG 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 170
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 149, 200
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 178, 220, 425
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 251, 443
Cfr10I RCCGGY 1 cut(s) 296
CseI GACGC 1 cut(s) 192
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 4 cut(s) 140, 187, 221, 389
DdeI CTNAG 2 cut(s) 402, 422
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 4 cut(s) 143, 190, 224, 392
FaiI YATR 6 cut(s) 122, 141, 188, 222, 390, 394
FaqI GGGAC 1 cut(s) 442
FatI CATG 4 cut(s) 139, 186, 220, 388
FauI CCCGC 1 cut(s) 450
Fnu4HI GCNGC 3 cut(s) 192, 234, 439
Fsp4HI GCNGC 3 cut(s) 192, 234, 439
FspBI CTAG 1 cut(s) 481
GluI GCNGC 3 cut(s) 192, 234, 439
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 192
Hin1II CATG 4 cut(s) 143, 190, 224, 392
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 2 cut(s) 14, 465
HpaII CCGG 1 cut(s) 297
HphI GGTGA 3 cut(s) 31, 109, 311
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 3 cut(s) 58, 403, 464
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 344, 355
HpyCH4V TGCA 4 cut(s) 194, 214, 265, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 200
HpyF3I CTNAG 2 cut(s) 402, 422
Hsp92II CATG 4 cut(s) 143, 190, 224, 392
LpnPI CCDG 2 cut(s) 267, 310
Lsp1109I GCAGC 3 cut(s) 178, 220, 425
LweI GCATC 2 cut(s) 220, 274
MaeI CTAG 1 cut(s) 481
MaeIII GTNAC 2 cut(s) 299, 372
MboII GAAGA 4 cut(s) 94, 106, 121, 368
MluCI AATT 2 cut(s) 196, 318
MlyI GAGTC 2 cut(s) 8, 474
MnlI CCTC 6 cut(s) 56, 71, 92, 104, 193, 470
Mph1103I ATGCAT 1 cut(s) 394
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 149, 200
NcoI CCATGG 1 cut(s) 186
NlaIII CATG 4 cut(s) 143, 190, 224, 392
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 299
NsiI ATGCAT 1 cut(s) 394
PceI AGGCCT 1 cut(s) 81
PctI GAATGC 1 cut(s) 329
PkrI GCNGC 3 cut(s) 193, 235, 440
PleI GAGTC 2 cut(s) 8, 473
PpsI GAGTC 2 cut(s) 8, 473
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 3 cut(s) 192, 234, 439
SchI GAGTC 2 cut(s) 8, 474
SetI ASST 7 cut(s) 48, 163, 185, 251, 366, 372, 440
SfaNI GCATC 2 cut(s) 220, 274
SfcI CTRYAG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 2 cut(s) 196, 318
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 1 cut(s) 443
SspMI CTAG 1 cut(s) 481
StuI AGGCCT 1 cut(s) 81
StyI CCWWGG 1 cut(s) 186
TaqII GACCGA 1 cut(s) 258
TasI AATT 2 cut(s) 196, 318
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 3 cut(s) 191, 233, 438
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 319
XapI RAATTY 1 cut(s) 196
XspI CTAG 1 cut(s) 481
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.