AT3G12345

histone peptidyl-prolyl isomerization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014405
Physical Location & Seq
Reverse (-)
3930019 .. 3931000
982 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12345.1

Sequence Viewer

Length: 561 bp
ATGGCGATAACACCTCTGCGAATCACGAACCCATTCCCATCTCTCCGCTTTATTCCCGCCGGAAAGCCCAATGCTTTAAGAATCTTCACCGTCCACGCTACCGACGTTGAGTCCACGGAGGATACTCAACCCGACCCGGAAACTACACAGTCCGAATCCGGCACTGATCCGGACCAATTCGAGTCTCGTCTCTCAAACATCAGACTCAGATACCGAAGCGGGACGGGTAAGAAAGCAGAAGTGAGAAAATCGAAGAAAGGGTCAAGTGGGTCTCCGTCGAAAGGTACGGGAATATATTTGCCGCCGGTAAGCTTAAAAGAAGCGGTTTCAGGTGGTTTGAAAGTGGAACCAGGGTTTAGTCCCTTCAGCGAAAGGATTAATGGAAGGATTGCGGGATTAGGGCTCACGGCTTTGCTTCTAGTTGAGCTTGCGACGGGTAAGAGTGTGTTGAATTACCACACGCCTTCTGTGGTGTTTCTTCAGATCTATTTCGTTGCGGCTGTTTCTGCTATGTTTGTCAAGATTGAGAAGGAGAAGGTTAGTGTTTGGCCTAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

186

Amino Acids

20.15

Weight (kDa)

9.58

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12345
malus_domestica MD07G1184800.v1.1
prunus_persica Prupe.2G224700_v2.0.a1
pyrus_communis pycom07g17700
rosa_chinensis RchiOBHm_Chr1g0365021
rosa_laevigata RLG00000027450
rosa_multiflora Rmu_co8162052.1_g000001 Rmu_sc0026248.1_g000001 Rmu_ssc0000112.1_g000015
rosa_roxburghii Rroxscaffold_4G00291550 Rroxscaffold_4G00291990
rosa_rugosa Rorug01G0318900
rosa_samantha Rh1AG328000 Rh1BG289400 Rh1CG306000 Rh1DG320800
rosa_wichuraiana Rw1G029090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 7 cut(s) 46, 57, 219, 302, 323, 392, 497
AclWI GGATC 1 cut(s) 161
AcuI CTGAAG 2 cut(s) 349, 464
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 340, 451
AhdI GACNNNNNGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 2 cut(s) 312, 427
AluI AGCT 2 cut(s) 312, 427
Alw26I GTCTC 3 cut(s) 189, 194, 276
AlwI GGATC 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 1 cut(s) 548
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AseI ATTAAT 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 552
BanII GRGCYC 1 cut(s) 405
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 423
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 115
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 189, 194, 276
BfaI CTAG 1 cut(s) 419
BfuI GTATCC 1 cut(s) 115
BglII AGATCT 1 cut(s) 483
BisI GCNGC 2 cut(s) 302, 498
BlsI GCNGC 2 cut(s) 303, 499
Bme1390I CCNGG 2 cut(s) 137, 351
Bme18I GGWCC 1 cut(s) 172
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 137, 351
BpuMI CCSGG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 114, 350
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 304
Bse21I CCTNAGG 1 cut(s) 552
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 114, 350
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 220
BshFI GGCC 1 cut(s) 550
BsiSI CCGG 5 cut(s) 60, 137, 159, 170, 305
BslFI GGGAC 2 cut(s) 235, 345
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 3 cut(s) 189, 194, 276
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 235, 345
BsnI GGCC 1 cut(s) 550
Bso31I GGTCTC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 405
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 2 cut(s) 166, 483
BspACI CCGC 7 cut(s) 46, 57, 219, 302, 323, 392, 497
BspANI GGCC 1 cut(s) 550
BspCNI CTCAG 1 cut(s) 219
BspEI TCCGGA 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 114, 350
BssMI GATC 2 cut(s) 166, 483
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 91, 150
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 2 cut(s) 206, 552
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 2 cut(s) 169, 486
BstMAI GTCTC 3 cut(s) 189, 194, 276
BstMBI GATC 2 cut(s) 166, 483
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 135, 349
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
Bsu36I CCTNAGG 1 cut(s) 552
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 550
BtgI CCRYGG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 285
CviJI RGCY 7 cut(s) 67, 312, 403, 410, 427, 500, 550
CviKI_1 RGCY 7 cut(s) 67, 312, 403, 410, 427, 500, 550
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 2 cut(s) 206, 552
DpnI GATC 2 cut(s) 168, 485
DpnII GATC 2 cut(s) 166, 483
DriI GACNNNNNGTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 2 cut(s) 349, 464
Eco81I CCTNAGG 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 194
FaiI YATR 2 cut(s) 295, 512
FaqI GGGAC 2 cut(s) 235, 345
FauI CCCGC 3 cut(s) 64, 212, 385
Fnu4HI GCNGC 2 cut(s) 302, 498
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 2 cut(s) 302, 498
FspBI CTAG 1 cut(s) 419
GluI GCNGC 2 cut(s) 302, 498
HaeIII GGCC 1 cut(s) 550
HapII CCGG 5 cut(s) 60, 137, 159, 170, 305
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 6 cut(s) 21, 81, 110, 155, 182, 204
HpaII CCGG 5 cut(s) 60, 137, 159, 170, 305
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 94, 114
Hpy188I TCNGA 4 cut(s) 154, 203, 209, 483
Hpy188III TCNNGA 3 cut(s) 25, 170, 520
Hpy8I GTNNAC 2 cut(s) 94, 114
Hpy99I CGWCG 3 cut(s) 107, 280, 436
HpyAV CCTTC 5 cut(s) 373, 378, 474, 523, 529
HpyCH4III ACNGT 2 cut(s) 91, 150
HpyCH4IV ACGT 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 2 cut(s) 206, 552
HpySE526I ACGT 1 cut(s) 105
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 166, 483
LpnPI CCDG 8 cut(s) 73, 150, 172, 183, 315, 318, 336, 363
MaeI CTAG 1 cut(s) 419
MaeII ACGT 1 cut(s) 105
MalI GATC 2 cut(s) 168, 485
MboI GATC 2 cut(s) 166, 483
MboII GAAGA 3 cut(s) 76, 265, 470
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 2 cut(s) 176, 451
MlyI GAGTC 3 cut(s) 119, 191, 198
MnlI CCTC 2 cut(s) 24, 112
MroI TCCGGA 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 4 cut(s) 77, 314, 378, 559
MspI CCGG 5 cut(s) 60, 137, 159, 170, 305
MspR9I CCNGG 2 cut(s) 137, 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 506
NciI CCSGG 1 cut(s) 137
NdeII GATC 2 cut(s) 166, 483
NlaIV GGNNCC 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 3 cut(s) 21, 81, 155
PkrI GCNGC 2 cut(s) 303, 499
PleI GAGTC 3 cut(s) 118, 190, 198
PpsI GAGTC 3 cut(s) 118, 190, 198
PshBI ATTAAT 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 483
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 4 cut(s) 77, 314, 378, 559
SatI GCNGC 2 cut(s) 302, 498
Sau3AI GATC 2 cut(s) 166, 483
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 3 cut(s) 119, 191, 198
ScrFI CCNGG 2 cut(s) 137, 351
SduI GDGCHC 1 cut(s) 405
SetI ASST 7 cut(s) 16, 108, 286, 314, 334, 429, 540
SinI GGWCC 1 cut(s) 172
Sse9I AATT 2 cut(s) 176, 451
SsiI CCGC 7 cut(s) 46, 57, 219, 302, 323, 392, 497
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 135, 349
TaaI ACNGT 2 cut(s) 91, 150
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 180, 251, 278
TasI AATT 2 cut(s) 176, 451
TauI GCSGC 2 cut(s) 304, 500
TfiI GAWTC 3 cut(s) 21, 81, 155
Tru1I TTAA 4 cut(s) 77, 314, 378, 559
Tru9I TTAA 4 cut(s) 77, 314, 378, 559
TscAI CASTG 1 cut(s) 169
TspGWI ACGGA 2 cut(s) 131, 264
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 172
VspI ATTAAT 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.