Prupe.2G224700_v2.0.a1

histone peptidyl-prolyl isomerization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014405
Physical Location & Seq
Reverse (-)
25203562 .. 25204720
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G224700.1

Sequence Viewer

Length: 576 bp
ATGGCGACAATGCCACCATCGTCTCTGCAACTCTCGAACCCATTCCCACTTGCGTCTTCATCAACCAAATCCCACGAGCCCAAACCCCTCCTTTCCTTCACCTCCCGAGCCACCGACTCCGAAACACCGCCCTCCGAGCCCTCGTCCGAATCTGGGTCCGACCCGGATGACTTCGACAGCAAGCTGAGCCAAGTCCGACTCCGCTACCGCAGCGGAACCGGCAAGAAAGCGGAGCTCCGGAAGACCAAGAAGTCGAAAAGCGGGTCCGGATCCTCATCCGGGTCCAACTTGTACCTTCCACCGGTGCCGCTTAAGGAGCCGGCGTCGGGCGGGTTGAAGGTGGATTTCGGGTTCAGTCCGTACAGCGAAAGGGTGAATGGTCGAATCGCGACTCTGGGGTTAACGGCGTTACTGCTGGTGGAGCTGGCGACGGGGAAGAGTGTGCTGAAATATCATACGCCGTCAGTTGTGCTGATTCAGGTGTATTTCGTGGCGGCGGTTGCAGCTGTCTATATAAAGTATGAGAAGGAGAAGGTCAGTGTGTGGCCTCAGTCCTCTCCGCCGCCTAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

192

Amino Acids

20.45

Weight (kDa)

9.52

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12345
malus_domestica MD07G1184800.v1.1
prunus_persica Prupe.2G224700_v2.0.a1
pyrus_communis pycom07g17700
rosa_chinensis RchiOBHm_Chr1g0365021
rosa_laevigata RLG00000027450
rosa_multiflora Rmu_co8162052.1_g000001 Rmu_sc0026248.1_g000001 Rmu_ssc0000112.1_g000015
rosa_roxburghii Rroxscaffold_4G00291550 Rroxscaffold_4G00291990
rosa_rugosa Rorug01G0318900
rosa_samantha Rh1AG328000 Rh1BG289400 Rh1CG306000 Rh1DG320800
rosa_wichuraiana Rw1G029090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 304
AccII CGCG 1 cut(s) 389
AccIII TCCGGA 2 cut(s) 237, 266
AclWI GGATC 2 cut(s) 264, 277
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 2 cut(s) 293, 362
AfiI CCNNNNNNNGG 4 cut(s) 153, 279, 301, 326
AflII CTTAAG 1 cut(s) 311
AgeI ACCGGT 1 cut(s) 301
AgsI TTSAA 1 cut(s) 337
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
AluBI AGCT 4 cut(s) 184, 235, 424, 506
AluI AGCT 4 cut(s) 184, 235, 424, 506
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 2 cut(s) 264, 277
Ama87I CYCGRG 1 cut(s) 105
Aor13HI TCCGGA 2 cut(s) 237, 266
AoxI GGCC 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 210, 503
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AsiGI ACCGGT 1 cut(s) 301
Asp700I GAANNNNTTC 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 156, 264, 282
AsuC2I CCSGG 2 cut(s) 164, 280
AsuHPI GGTGA 2 cut(s) 91, 385
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 3 cut(s) 156, 264, 282
BamHI GGATCC 1 cut(s) 269
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 3 cut(s) 81, 141, 237
BauI CACGAG 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 48, 248
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 222, 515
BccI CCATC 1 cut(s) 25
BceAI ACGGC 2 cut(s) 420, 445
BcnI CCSGG 2 cut(s) 164, 280
BcoDI GTCTC 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 311
BisI GCNGC 5 cut(s) 211, 308, 495, 504, 563
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 5 cut(s) 212, 309, 496, 505, 564
Bme1390I CCNGG 2 cut(s) 164, 280
Bme18I GGWCC 3 cut(s) 156, 264, 282
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 3 cut(s) 156, 264, 282
BmiI GGNNCC 7 cut(s) 157, 217, 265, 271, 283, 306, 318
BmrFI CCNGG 2 cut(s) 164, 280
BpiI GAAGAC 2 cut(s) 48, 248
Bpu1102I GCTNAGC 1 cut(s) 185
BpuMI CCSGG 2 cut(s) 164, 280
BsaBI GATNNNNATC 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 323
BsaWI WCCGGW 3 cut(s) 237, 266, 301
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 279, 301, 326
Bse118I RCCGGY 3 cut(s) 218, 301, 319
Bse8I GATNNNNATC 1 cut(s) 274
BseAI TCCGGA 2 cut(s) 237, 266
BseGI GGATG 2 cut(s) 172, 275
BseJI GATNNNNATC 1 cut(s) 274
BseLI CCNNNNNNNGG 4 cut(s) 153, 279, 301, 326
BseMII CTCAG 2 cut(s) 176, 563
BseXI GCAGC 2 cut(s) 222, 515
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 1 cut(s) 547
BshNI GGYRCC 1 cut(s) 304
BshTI ACCGGT 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 7 cut(s) 164, 219, 238, 267, 279, 302, 320
BslI CCNNNNNNNGG 4 cut(s) 153, 279, 301, 326
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 1 cut(s) 547
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 3 cut(s) 81, 141, 237
Bsp13I TCCGGA 2 cut(s) 237, 266
Bsp143I GATC 1 cut(s) 269
Bsp1720I GCTNAGC 1 cut(s) 185
Bsp68I TCGCGA 1 cut(s) 389
BspANI GGCC 1 cut(s) 547
BspCNI CTCAG 2 cut(s) 177, 562
BspEI TCCGGA 2 cut(s) 237, 266
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 7 cut(s) 157, 217, 265, 271, 283, 306, 318
BspPI GGATC 2 cut(s) 264, 277
BspT107I GGYRCC 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 311
BsrFI RCCGGY 3 cut(s) 218, 301, 319
BssAI RCCGGY 3 cut(s) 218, 301, 319
BssMI GATC 1 cut(s) 269
BssNI GRCGYC 1 cut(s) 323
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 431
BstACI GRCGYC 1 cut(s) 323
BstAFI CTTAAG 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 182, 321, 426
BstDEI CTNAG 2 cut(s) 185, 549
BstF5I GGATG 2 cut(s) 172, 275
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 8 cut(s) 136, 186, 210, 219, 316, 421, 500, 503
BstSCI CCNGG 2 cut(s) 162, 278
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 2 cut(s) 222, 515
BstV2I GAAGAC 2 cut(s) 48, 248
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 547
BtsCI GGATG 2 cut(s) 172, 275
BtsIMutI CAGTG 1 cut(s) 544
BtuMI TCGCGA 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 182, 321, 426
Cfr10I RCCGGY 3 cut(s) 218, 301, 319
Cfr13I GGNCC 3 cut(s) 156, 264, 282
CseI GACGC 2 cut(s) 42, 312
Csp6I GTAC 2 cut(s) 292, 361
CspAI ACCGGT 1 cut(s) 301
CviQI GTAC 2 cut(s) 292, 361
DdeI CTNAG 2 cut(s) 185, 549
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 431
EarI CTCTTC 1 cut(s) 431
EciI GGCGGA 1 cut(s) 549
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 3 cut(s) 81, 141, 237
Eco47I GGWCC 3 cut(s) 156, 264, 282
Eco53kI GAGCTC 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 235
EcoT38I GRGCYC 3 cut(s) 81, 141, 237
Esp3I CGTCTC 1 cut(s) 27
FaiI YATR 4 cut(s) 456, 513, 515, 522
FauI CCCGC 2 cut(s) 254, 323
Fnu4HI GCNGC 5 cut(s) 211, 308, 495, 504, 563
FokI GGATG 2 cut(s) 179, 262
FriOI GRGCYC 3 cut(s) 81, 141, 237
Fsp4HI GCNGC 5 cut(s) 211, 308, 495, 504, 563
GluI GCNGC 5 cut(s) 211, 308, 495, 504, 563
HaeIII GGCC 1 cut(s) 547
HapII CCGG 7 cut(s) 164, 219, 238, 267, 279, 302, 320
HgaI GACGC 2 cut(s) 42, 312
Hin1I GRCGYC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 6 cut(s) 116, 149, 198, 384, 391, 475
HpaI GTTAAC 1 cut(s) 402
HpaII CCGG 7 cut(s) 164, 219, 238, 267, 279, 302, 320
HphI GGTGA 2 cut(s) 91, 385
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 5 cut(s) 121, 136, 148, 160, 197
Hpy188III TCNNGA 5 cut(s) 34, 105, 238, 267, 388
Hpy8I GTNNAC 1 cut(s) 402
Hpy99I CGWCG 2 cut(s) 328, 433
HpyAV CCTTC 5 cut(s) 106, 305, 331, 520, 526
HpyCH4V TGCA 2 cut(s) 28, 503
HpyF10VI GCNNNNNNNGC 8 cut(s) 136, 186, 210, 219, 316, 421, 500, 503
HpyF3I CTNAG 2 cut(s) 185, 549
Hsp92I GRCGYC 1 cut(s) 323
Kpn2I TCCGGA 2 cut(s) 237, 266
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
KspAI GTTAAC 1 cut(s) 402
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 4 cut(s) 232, 240, 316, 421
Lsp1109I GCAGC 2 cut(s) 222, 515
MaeIII GTNAC 1 cut(s) 408
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 3 cut(s) 48, 253, 448
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 3 cut(s) 81, 141, 237
MlyI GAGTC 3 cut(s) 110, 192, 385
MmeI TCCRAC 3 cut(s) 183, 220, 309
MnlI CCTC 7 cut(s) 98, 112, 142, 151, 283, 558, 565
MroI TCCGGA 2 cut(s) 237, 266
MroNI GCCGGC 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 2 cut(s) 312, 401
MspA1I CMGCKG 2 cut(s) 213, 506
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 7 cut(s) 164, 219, 238, 267, 279, 302, 320
MspR9I CCNGG 2 cut(s) 164, 280
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 8 cut(s) 136, 186, 210, 219, 316, 421, 500, 503
NaeI GCCGGC 1 cut(s) 321
NciI CCSGG 2 cut(s) 164, 280
NdeII GATC 1 cut(s) 269
NgoMIV GCCGGC 1 cut(s) 319
NlaIV GGNNCC 7 cut(s) 157, 217, 265, 271, 283, 306, 318
NruI TCGCGA 1 cut(s) 389
PdiI GCCGGC 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 3 cut(s) 149, 384, 475
PinAI ACCGGT 1 cut(s) 301
PkrI GCNGC 5 cut(s) 212, 309, 496, 505, 564
PleI GAGTC 3 cut(s) 110, 192, 385
PpsI GAGTC 3 cut(s) 110, 192, 385
Psp124BI GAGCTC 1 cut(s) 237
PspN4I GGNNCC 7 cut(s) 157, 217, 265, 271, 283, 306, 318
PspPI GGNCC 3 cut(s) 156, 264, 282
PsuI RGATCY 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 506
RruI TCGCGA 1 cut(s) 389
RsaI GTAC 2 cut(s) 293, 362
RsaNI GTAC 2 cut(s) 292, 361
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 312, 401
SatI GCNGC 5 cut(s) 211, 308, 495, 504, 563
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 3 cut(s) 156, 264, 282
SchI GAGTC 3 cut(s) 110, 192, 385
ScrFI CCNGG 2 cut(s) 164, 280
SduI GDGCHC 3 cut(s) 81, 141, 237
SetI ASST 9 cut(s) 104, 186, 237, 297, 342, 426, 483, 508, 537
SgrAI CRCCGGYG 1 cut(s) 301
SinI GGWCC 3 cut(s) 156, 264, 282
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 162, 278
TaqI TCGA 4 cut(s) 35, 174, 254, 382
TauI GCSGC 3 cut(s) 310, 497, 565
TfiI GAWTC 3 cut(s) 149, 384, 475
Tru1I TTAA 2 cut(s) 312, 401
Tru9I TTAA 2 cut(s) 312, 401
TscAI CASTG 1 cut(s) 544
TseI GCWGC 2 cut(s) 210, 503
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 1 cut(s) 544
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 3 cut(s) 156, 264, 282
XmnI GAANNNNTTC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.