MD07G1184800.v1.1

histone peptidyl-prolyl isomerization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014405
Physical Location & Seq
Reverse (-)
26604672 .. 26605244
573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1184800.v1.1.491

Sequence Viewer

Length: 573 bp
ATGGCGACAATGCCACCATCCTCCCTGCAACTCCCCAACCCATTCCCACTCACGTCCTCATCGACCAAACCCCACTCGCCCAAACCCTCCTTCTACTTCGCAACCCGAGCCACTGACCCGGAAACGCCACCCCCCGAGCCATCGTCCGAATCCGGTTCCGTCCCGGATGACTTCGACAGCAAGCTGAGCCAGGTCCGACTCCGATACCGCAGCGGCACCGGAAAGAAAGCGGAAATCCGGAAGACGAAGAAGTCCAAAAGCGGTTCCGGATCCTCATCCGCGTCCAACTTGTACCTTCCACCGGTGCCGCTCAAGGAGCCGGTGTCTGGCGGGTTGAAGGTGGATTTCGGGTTCAGCCCGTACAGCGAGAGGTTAAACGGGCGAATCGCAATTCTGGGTCTAACGGCGTTGCTGCTGGTGGAGCTGGCGACTGGGAAGAGCGTGTTAAAGTATCATACGCCGTCGGTTGTGCTGGTGCAGGTTTACTTTGTGGCGGCGGTTGCGGCGGTGTATATTAAGTATGAGAAAGAGAAGGTGAGTGTATGGCCTCAGTCCGCTCCGCCCAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

191

Amino Acids

20.48

Weight (kDa)

9.67

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12345
malus_domestica MD07G1184800.v1.1
prunus_persica Prupe.2G224700_v2.0.a1
pyrus_communis pycom07g17700
rosa_chinensis RchiOBHm_Chr1g0365021
rosa_laevigata RLG00000027450
rosa_multiflora Rmu_co8162052.1_g000001 Rmu_sc0026248.1_g000001 Rmu_ssc0000112.1_g000015
rosa_roxburghii Rroxscaffold_4G00291550 Rroxscaffold_4G00291990
rosa_rugosa Rorug01G0318900
rosa_samantha Rh1AG328000 Rh1BG289400 Rh1CG306000 Rh1DG320800
rosa_wichuraiana Rw1G029090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
Acc36I ACCTGC 1 cut(s) 469
AccB1I GGYRCC 2 cut(s) 215, 304
AccBSI CCGCTC 2 cut(s) 310, 557
AccII CGCG 1 cut(s) 281
AccIII TCCGGA 2 cut(s) 237, 266
AclWI GGATC 2 cut(s) 264, 277
AfaI GTAC 2 cut(s) 293, 362
AfiI CCNNNNNNNGG 2 cut(s) 301, 326
AgeI ACCGGT 1 cut(s) 301
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 54
AjnI CCWGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
AluBI AGCT 2 cut(s) 184, 424
AluI AGCT 2 cut(s) 184, 424
AlwI GGATC 2 cut(s) 264, 277
Ama87I CYCGRG 2 cut(s) 105, 134
Aor13HI TCCGGA 2 cut(s) 237, 266
AoxI GGCC 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 210, 412
AsiGI ACCGGT 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 2 cut(s) 119, 164
AsuHPI GGTGA 1 cut(s) 547
AvaI CYCGRG 2 cut(s) 105, 134
AvaII GGWCC 1 cut(s) 193
BamHI GGATCC 1 cut(s) 269
BanI GGYRCC 2 cut(s) 215, 304
BbsI GAAGAC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 222, 399
BccI CCATC 2 cut(s) 25, 148
BceAI ACGGC 2 cut(s) 420, 445
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 2 cut(s) 119, 164
BfuAI ACCTGC 1 cut(s) 469
BisI GCNGC 6 cut(s) 211, 214, 308, 413, 495, 504
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 6 cut(s) 212, 215, 309, 414, 496, 505
Bme1390I CCNGG 3 cut(s) 119, 164, 191
Bme18I GGWCC 1 cut(s) 193
BmeT110I CYCGRG 2 cut(s) 105, 134
BmgBI CACGTC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 6 cut(s) 157, 217, 265, 271, 306, 318
BmrFI CCNGG 3 cut(s) 119, 164, 191
BmrI ACTGGG 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 248
Bpu1102I GCTNAGC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 119, 164
BsaBI GATNNNNATC 1 cut(s) 274
BsaWI WCCGGW 5 cut(s) 152, 218, 237, 266, 301
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 326
Bse118I RCCGGY 2 cut(s) 301, 319
Bse1I ACTGG 1 cut(s) 436
Bse8I GATNNNNATC 1 cut(s) 274
BseAI TCCGGA 2 cut(s) 237, 266
BseBI CCWGG 1 cut(s) 191
BseGI GGATG 3 cut(s) 17, 172, 275
BseJI GATNNNNATC 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 301, 326
BseMII CTCAG 2 cut(s) 176, 563
BseNI ACTGG 1 cut(s) 436
BseXI GCAGC 2 cut(s) 222, 399
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 1 cut(s) 547
BshNI GGYRCC 2 cut(s) 215, 304
BshTI ACCGGT 1 cut(s) 301
BsiHKCI CYCGRG 2 cut(s) 105, 134
BsiSI CCGG 8 cut(s) 119, 153, 164, 219, 238, 267, 302, 320
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 301, 326
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 547
BsoBI CYCGRG 2 cut(s) 105, 134
Bsp13I TCCGGA 2 cut(s) 237, 266
Bsp143I GATC 1 cut(s) 269
Bsp1720I GCTNAGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 547
BspCNI CTCAG 2 cut(s) 177, 562
BspEI TCCGGA 2 cut(s) 237, 266
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 6 cut(s) 157, 217, 265, 271, 306, 318
BspMI ACCTGC 1 cut(s) 469
BspPI GGATC 2 cut(s) 264, 277
BspQI GCTCTTC 1 cut(s) 431
BspT107I GGYRCC 2 cut(s) 215, 304
BsrBI CCGCTC 2 cut(s) 310, 557
BsrFI RCCGGY 2 cut(s) 301, 319
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 2 cut(s) 301, 319
BssMI GATC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 182, 426
BstDEI CTNAG 2 cut(s) 185, 549
BstF5I GGATG 3 cut(s) 17, 172, 275
BstFNI CGCG 1 cut(s) 281
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 7 cut(s) 107, 186, 316, 363, 421, 500, 503
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 3 cut(s) 117, 162, 189
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 222, 399
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 547
BtrI CACGTC 1 cut(s) 54
BtsCI GGATG 3 cut(s) 17, 172, 275
BtsIMutI CAGTG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 2 cut(s) 182, 426
Cfr10I RCCGGY 2 cut(s) 301, 319
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 292, 361
CspAI ACCGGT 1 cut(s) 301
CviJI RGCY 8 cut(s) 110, 139, 184, 189, 319, 357, 424, 547
CviKI_1 RGCY 8 cut(s) 110, 139, 184, 189, 319, 357, 424, 547
CviQI GTAC 2 cut(s) 292, 361
DdeI CTNAG 2 cut(s) 185, 549
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 431
EarI CTCTTC 1 cut(s) 431
EciI GGCGGA 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 193
Eco88I CYCGRG 2 cut(s) 105, 134
EcoRII CCWGG 1 cut(s) 189
FaiI YATR 4 cut(s) 456, 513, 522, 544
FaqI GGGAC 1 cut(s) 146
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 6 cut(s) 211, 214, 308, 413, 495, 504
FokI GGATG 3 cut(s) 4, 179, 262
Fsp4HI GCNGC 6 cut(s) 211, 214, 308, 413, 495, 504
GluI GCNGC 6 cut(s) 211, 214, 308, 413, 495, 504
HaeIII GGCC 1 cut(s) 547
HapII CCGG 8 cut(s) 119, 153, 164, 219, 238, 267, 302, 320
HgaI GACGC 1 cut(s) 270
HinfI GANTC 3 cut(s) 149, 198, 384
HpaII CCGG 8 cut(s) 119, 153, 164, 219, 238, 267, 302, 320
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 3 cut(s) 148, 197, 203
Hpy188III TCNNGA 2 cut(s) 238, 267
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 1 cut(s) 466
HpyAV CCTTC 4 cut(s) 100, 305, 331, 526
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 28, 478
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 186, 316, 363, 421, 500, 503
HpyF3I CTNAG 2 cut(s) 185, 549
HpySE526I ACGT 1 cut(s) 53
Kpn2I TCCGGA 2 cut(s) 237, 266
Kzo9I GATC 1 cut(s) 269
LguI GCTCTTC 1 cut(s) 431
LmnI GCTCC 3 cut(s) 316, 421, 562
Lsp1109I GCAGC 2 cut(s) 222, 399
MaeII ACGT 1 cut(s) 53
MalI GATC 1 cut(s) 271
MbiI CCGCTC 2 cut(s) 310, 557
MboI GATC 1 cut(s) 269
MboII GAAGA 3 cut(s) 253, 259, 448
MflI RGATCY 1 cut(s) 269
MluCI AATT 1 cut(s) 390
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 2 cut(s) 220, 309
MnlI CCTC 6 cut(s) 31, 67, 97, 283, 363, 558
MroI TCCGGA 2 cut(s) 237, 266
MseI TTAA 3 cut(s) 374, 446, 516
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 8 cut(s) 119, 153, 164, 219, 238, 267, 302, 320
MspR9I CCNGG 3 cut(s) 119, 164, 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 7 cut(s) 107, 186, 316, 363, 421, 500, 503
NciI CCSGG 2 cut(s) 119, 164
NdeII GATC 1 cut(s) 269
NlaIV GGNNCC 6 cut(s) 157, 217, 265, 271, 306, 318
PciSI GCTCTTC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PfeI GAWTC 2 cut(s) 149, 384
PfoI TCCNGGA 1 cut(s) 162
PinAI ACCGGT 1 cut(s) 301
PkrI GCNGC 6 cut(s) 212, 215, 309, 414, 496, 505
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 6 cut(s) 157, 217, 265, 271, 306, 318
PspPI GGNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 2 cut(s) 293, 362
RsaNI GTAC 2 cut(s) 292, 361
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 3 cut(s) 374, 446, 516
SatI GCNGC 6 cut(s) 211, 214, 308, 413, 495, 504
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 3 cut(s) 119, 164, 191
SetI ASST 9 cut(s) 56, 186, 195, 297, 342, 374, 426, 483, 537
SgrAI CRCCGGYG 1 cut(s) 301
SinI GGWCC 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 390
StyD4I CCNGG 3 cut(s) 117, 162, 189
TaiI ACGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 62, 174
TasI AATT 1 cut(s) 390
TauI GCSGC 4 cut(s) 216, 310, 497, 506
TfiI GAWTC 2 cut(s) 149, 384
Tru1I TTAA 3 cut(s) 374, 446, 516
Tru9I TTAA 3 cut(s) 374, 446, 516
TscAI CASTG 1 cut(s) 118
TseI GCWGC 2 cut(s) 210, 412
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.