Rw1G029090

histone peptidyl-prolyl isomerization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0014405
Physical Location & Seq
Reverse (-)
56732849 .. 56734062
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029090.1

Sequence Viewer

Length: 636 bp
ATGGTAAACTGGAAAAAATTATCCAAACCAAACCAGAGAGTGAGAGAGGTGCAGAGAATTAAGAAAATGGCCAGCCTATCACCTTCTTCATCTCCGCGACTCCCAAACCCATTCCCACTCTCATCACCACCCAAAACCCACAACCCCAAACCCCTCCTTTCGTTCCCCACCCGAGCCACCGACCCGGAAACACCCCCATCCGACCCGGCCCCAGAATCCGGCTCCGACTTCGACGACCGCCTCAGCCAGGTCCGGCTCCGCTACCGCAGCGGCACCGGCAAGAAAGCCGAGGCCCGGAAGACCAAGAAGTCCAAGTCGTCCGGGTCCGGGTCGTCCGGGTCCAACGTCTTCCTCCCGCCGGTGCCGCTCAAGGAACCCGTGTCGGGCGGGTTGAAGGTGGACTTCGGGTTCAGCCCGTATAGCGAGCGGGTCAACGGGCGGGTCGCGCTTCTGGGTTTGGCGGCGTTGCTGCTGGTGGAGCTGGCGACGGGGAAGAGCGTACTGAAATTTCATACGCCGCCGGTGGTGCTCATTCAGGTTTACTTTGTGGCGGCGGCGACGGCGGTTTATATTAAGTATGAGAAAGAGAAGGTCAGTGTTTGGCCTCAGTCTCAGTCTCCACCACTCAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

211

Amino Acids

23.0

Weight (kDa)

10.19

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12345
malus_domestica MD07G1184800.v1.1
prunus_persica Prupe.2G224700_v2.0.a1
pyrus_communis pycom07g17700
rosa_chinensis RchiOBHm_Chr1g0365021
rosa_laevigata RLG00000027450
rosa_multiflora Rmu_co8162052.1_g000001 Rmu_sc0026248.1_g000001 Rmu_ssc0000112.1_g000015
rosa_roxburghii Rroxscaffold_4G00291550 Rroxscaffold_4G00291990
rosa_rugosa Rorug01G0318900
rosa_samantha Rh1AG328000 Rh1BG289400 Rh1CG306000 Rh1DG320800
rosa_wichuraiana Rw1G029090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 307
AccB1I GGYRCC 2 cut(s) 272, 361
AccBSI CCGCTC 2 cut(s) 367, 427
AccII CGCG 2 cut(s) 97, 446
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 506
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 6 cut(s) 218, 247, 294, 327, 358, 383
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 1 cut(s) 246
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 1 cut(s) 481
AluI AGCT 1 cut(s) 481
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 2 cut(s) 615, 621
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 4 cut(s) 69, 207, 291, 602
ApeKI GCWGC 2 cut(s) 267, 469
ApoI RAATTY 1 cut(s) 506
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 5 cut(s) 208, 250, 292, 324, 339
AsuC2I CCSGG 6 cut(s) 185, 206, 295, 322, 328, 337
AsuHPI GGTGA 2 cut(s) 72, 117
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 3 cut(s) 250, 324, 339
BalI TGGCCA 1 cut(s) 71
BanI GGYRCC 2 cut(s) 272, 361
BbsI GAAGAC 2 cut(s) 305, 340
Bbv12I GWGCWC 1 cut(s) 531
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 279, 456
BccI CCATC 1 cut(s) 205
BceAI ACGGC 1 cut(s) 576
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 6 cut(s) 185, 206, 295, 322, 328, 337
BcoDI GTCTC 2 cut(s) 615, 621
BisI GCNGC 8 cut(s) 268, 271, 365, 462, 470, 518, 552, 555
BlsI GCNGC 8 cut(s) 269, 272, 366, 463, 471, 519, 553, 556
Bme1390I CCNGG 7 cut(s) 185, 206, 248, 295, 322, 328, 337
Bme18I GGWCC 3 cut(s) 250, 324, 339
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 5 cut(s) 208, 250, 292, 324, 339
BmiI GGNNCC 8 cut(s) 210, 223, 257, 274, 325, 340, 363, 375
BmrFI CCNGG 7 cut(s) 185, 206, 248, 295, 322, 328, 337
BpiI GAAGAC 2 cut(s) 305, 340
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 6 cut(s) 185, 206, 295, 322, 328, 337
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 6 cut(s) 218, 247, 294, 327, 358, 383
Bse118I RCCGGY 3 cut(s) 275, 358, 520
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 6 cut(s) 218, 247, 294, 327, 358, 383
BseMII CTCAG 3 cut(s) 256, 620, 626
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 279, 456
BsgI GTGCAG 1 cut(s) 71
Bsh1236I CGCG 2 cut(s) 97, 446
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 4 cut(s) 71, 209, 293, 604
BshNI GGYRCC 2 cut(s) 272, 361
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 171
BslI CCNNNNNNNGG 6 cut(s) 218, 247, 294, 327, 358, 383
BsmAI GTCTC 2 cut(s) 615, 621
BsnI GGCC 4 cut(s) 71, 209, 293, 604
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 531
BspANI GGCC 4 cut(s) 71, 209, 293, 604
BspCNI CTCAG 3 cut(s) 255, 619, 625
BspFNI CGCG 2 cut(s) 97, 446
BspLI GGNNCC 8 cut(s) 210, 223, 257, 274, 325, 340, 363, 375
BspQI GCTCTTC 1 cut(s) 488
BspT107I GGYRCC 2 cut(s) 272, 361
BsrBI CCGCTC 2 cut(s) 367, 427
BsrFI RCCGGY 3 cut(s) 275, 358, 520
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 3 cut(s) 275, 358, 520
BssECI CCNNGG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 488
BstC8I GCNNGC 3 cut(s) 73, 425, 483
BstDEI CTNAG 3 cut(s) 242, 606, 612
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 2 cut(s) 97, 446
BstHHI GCGC 1 cut(s) 448
BstMAI GTCTC 2 cut(s) 615, 621
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 8 cut(s) 267, 276, 364, 420, 445, 478, 526, 560
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 7 cut(s) 183, 204, 246, 293, 320, 326, 335
BstUI CGCG 2 cut(s) 97, 446
BstV1I GCAGC 2 cut(s) 279, 456
BstV2I GAAGAC 2 cut(s) 305, 340
BsuRI GGCC 4 cut(s) 71, 209, 293, 604
BtsCI GGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 601
Cac8I GCNNGC 3 cut(s) 73, 425, 483
CfoI GCGC 1 cut(s) 448
Cfr10I RCCGGY 3 cut(s) 275, 358, 520
Cfr13I GGNCC 5 cut(s) 208, 250, 292, 324, 339
Csp6I GTAC 1 cut(s) 500
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 3 cut(s) 242, 606, 612
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco47I GGWCC 3 cut(s) 250, 324, 339
Eco88I CYCGRG 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 246
FaiI YATR 4 cut(s) 420, 513, 570, 579
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FauI CCCGC 4 cut(s) 363, 380, 420, 432
Fnu4HI GCNGC 8 cut(s) 268, 271, 365, 462, 470, 518, 552, 555
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 8 cut(s) 268, 271, 365, 462, 470, 518, 552, 555
GlaI GCGC 1 cut(s) 447
GluI GCNGC 8 cut(s) 268, 271, 365, 462, 470, 518, 552, 555
HaeIII GGCC 4 cut(s) 71, 209, 293, 604
HhaI GCGC 1 cut(s) 448
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 2 cut(s) 99, 215
HphI GGTGA 2 cut(s) 72, 117
Hpy166II GTNNAC 4 cut(s) 7, 400, 433, 541
Hpy188I TCNGA 2 cut(s) 202, 226
Hpy8I GTNNAC 4 cut(s) 7, 400, 433, 541
Hpy99I CGWCG 3 cut(s) 236, 490, 562
HpyAV CCTTC 3 cut(s) 93, 388, 583
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 8 cut(s) 267, 276, 364, 420, 445, 478, 526, 560
HpyF3I CTNAG 3 cut(s) 242, 606, 612
HpySE526I ACGT 1 cut(s) 345
HspAI GCGC 1 cut(s) 446
LguI GCTCTTC 1 cut(s) 488
LmnI GCTCC 3 cut(s) 227, 261, 478
Lsp1109I GCAGC 2 cut(s) 279, 456
MaeII ACGT 1 cut(s) 345
MbiI CCGCTC 2 cut(s) 367, 427
MboII GAAGA 4 cut(s) 78, 310, 340, 505
MhlI GDGCHC 1 cut(s) 531
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 3 cut(s) 17, 57, 506
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 3 cut(s) 225, 249, 366
MnlI CCTC 6 cut(s) 40, 164, 251, 283, 362, 615
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
MseI TTAA 2 cut(s) 60, 573
Msp20I TGGCCA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 270
MspR9I CCNGG 7 cut(s) 185, 206, 248, 295, 322, 328, 337
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 2 cut(s) 97, 446
MwoI GCNNNNNNNGC 8 cut(s) 267, 276, 364, 420, 445, 478, 526, 560
NciI CCSGG 6 cut(s) 185, 206, 295, 322, 328, 337
NlaIV GGNNCC 8 cut(s) 210, 223, 257, 274, 325, 340, 363, 375
NmeAIII GCCGAG 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 8 cut(s) 269, 272, 366, 463, 471, 519, 553, 556
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 8 cut(s) 210, 223, 257, 274, 325, 340, 363, 375
PspPI GGNCC 5 cut(s) 208, 250, 292, 324, 339
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 2 cut(s) 60, 573
SatI GCNGC 8 cut(s) 268, 271, 365, 462, 470, 518, 552, 555
Sau96I GGNCC 5 cut(s) 208, 250, 292, 324, 339
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 7 cut(s) 185, 206, 248, 295, 322, 328, 337
SduI GDGCHC 1 cut(s) 531
SetI ASST 8 cut(s) 51, 85, 252, 348, 399, 483, 540, 594
SgrAI CRCCGGYG 2 cut(s) 358, 520
SinI GGWCC 3 cut(s) 250, 324, 339
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 3 cut(s) 17, 57, 506
StyD4I CCNGG 7 cut(s) 183, 204, 246, 293, 320, 326, 335
TaiI ACGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 231
TasI AATT 3 cut(s) 17, 57, 506
TauI GCSGC 6 cut(s) 273, 367, 464, 520, 554, 557
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 2 cut(s) 60, 573
Tru9I TTAA 2 cut(s) 60, 573
TscAI CASTG 1 cut(s) 601
TseI GCWGC 2 cut(s) 267, 469
TspDTI ATGAA 2 cut(s) 78, 500
TspRI CASTG 1 cut(s) 601
VpaK11BI GGWCC 3 cut(s) 250, 324, 339
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.