AT3G13227

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015840
Physical Location & Seq
Forward (+)
4257882 .. 4258648
767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13227.1

Sequence Viewer

Length: 336 bp
ATGGAAGGGAAAGAGGAAGAAGCAAAGAGGAGGATGATGATGAAGATCAAACTTAAGGAGACAGAAGCAGACGTAAGCCAAGACGACATTAAAAGACAAGAAGCTTACAACATGTCTCCACGCGTACGTCGTGGTGGTGGTGGTGGCGGTGGCTCGGTAGGTATGAGCAAGTCATCGAGCGTGAGGCAAAACTGTTTATGCGCACCAACTACACACCCTGGCTCCTTCAGGTGCCGTTACCACCGTCGTAACGCTGGACTCGGGATGTCTCGTGGCACATCCGTTCCCTCTAACCTTTCCATGTTGGCTGGTGGAGACTCTAATTCTCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.02

Weight (kDa)

10.02

Isoelectric Point (pI)

80.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015840)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13227
fragaria_vesca FvH4_3g42280 FvH4_3g42280
malus_domestica MD03G1035000.v1.1
prunus_persica Prupe.6G028200_v2.0.a1
pyrus_communis pycom03g02720 pycom11g03060
rosa_chinensis RchiOBHm_Chr5g0075611
rosa_roxburghii Rroxscaffold_1G00005960
rosa_rugosa Rorug05G0441700
rosa_samantha Rh5AG498000 Rh5BG519000 Rh5CG542600 Rh5DG530100
rosa_wichuraiana Rw5G046190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 231
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 211
AfaI GTAC 1 cut(s) 126
AflII CTTAAG 1 cut(s) 53
AflIII ACRYGT 2 cut(s) 111, 121
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw26I GTCTC 4 cut(s) 53, 120, 273, 309
Ama87I CYCGRG 1 cut(s) 260
AspLEI GCGC 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 260
BanI GGYRCC 1 cut(s) 231
BauI CACGAG 1 cut(s) 270
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 219
BcoDI GTCTC 4 cut(s) 53, 120, 273, 309
BfrI CTTAAG 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 223, 233
BmrFI CCNGG 1 cut(s) 219
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 3 cut(s) 39, 270, 278
BseJI GATNNNNATC 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 260
BsiWI CGTACG 1 cut(s) 124
BsmAI GTCTC 4 cut(s) 53, 120, 273, 309
BsoBI CYCGRG 1 cut(s) 260
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 1 cut(s) 147
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 223, 233
BspT107I GGYRCC 1 cut(s) 231
BspTI CTTAAG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 45
BssSI CACGAG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 194, 245
BstAFI CTTAAG 1 cut(s) 53
BstF5I GGATG 3 cut(s) 39, 270, 278
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 4 cut(s) 53, 120, 273, 309
BstMBI GATC 1 cut(s) 45
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 217
BstUI CGCG 1 cut(s) 123
BtsCI GGATG 3 cut(s) 39, 270, 278
CfoI GCGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 125
CviAII CATG 2 cut(s) 112, 301
CviJI RGCY 5 cut(s) 78, 104, 153, 222, 308
CviKI_1 RGCY 5 cut(s) 78, 104, 153, 222, 308
CviQI GTAC 1 cut(s) 125
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 217
FaeI CATG 2 cut(s) 115, 304
FaiI YATR 4 cut(s) 113, 164, 199, 302
FatI CATG 2 cut(s) 111, 300
FokI GGATG 3 cut(s) 46, 265, 277
FspAI RTGCGCAY 1 cut(s) 202
FspI TGCGCA 1 cut(s) 202
GlaI GCGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 115, 304
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 2 cut(s) 258, 317
Hpy188III TCNNGA 1 cut(s) 262
Hpy99I CGWCG 2 cut(s) 132, 249
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 194, 245
HpyCH4IV ACGT 2 cut(s) 72, 127
HpySE526I ACGT 2 cut(s) 72, 127
Hsp92II CATG 2 cut(s) 115, 304
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 5 cut(s) 204, 214, 231, 240, 294
MaeII ACGT 2 cut(s) 72, 127
MaeIII GTNAC 2 cut(s) 236, 248
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 29, 55
MluCI AATT 1 cut(s) 322
MluI ACGCGT 1 cut(s) 121
MlyI GAGTC 2 cut(s) 252, 311
MnlI CCTC 5 cut(s) 7, 21, 24, 177, 298
MseI TTAA 2 cut(s) 54, 90
MspCI CTTAAG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MvnI CGCG 1 cut(s) 123
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 115, 304
NlaIV GGNNCC 2 cut(s) 223, 233
NsbI TGCGCA 1 cut(s) 202
NspI RCATGY 1 cut(s) 115
PciI ACATGT 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 127
Pfl23II CGTACG 1 cut(s) 124
PleI GAGTC 2 cut(s) 252, 311
PpsI GAGTC 2 cut(s) 252, 311
PscI ACATGT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspLI CGTACG 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 223, 233
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 54, 90
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 2 cut(s) 252, 311
ScrFI CCNGG 1 cut(s) 219
SetI ASST 6 cut(s) 75, 106, 130, 163, 233, 297
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 322
SsiI CCGC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 2 cut(s) 194, 245
TaiI ACGT 2 cut(s) 75, 130
TaqI TCGA 1 cut(s) 176
TasI AATT 1 cut(s) 322
Tru1I TTAA 2 cut(s) 54, 90
Tru9I TTAA 2 cut(s) 54, 90
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 53
XceI RCATGY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.