FvH4_3g42280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015840
Physical Location & Seq
Reverse (-)
35287705 .. 35288909
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42280.t1

Sequence Viewer

Length: 321 bp
ATGGCTGAGAAGATGGAGAAGAAATCCCAAACCTCAAGGATGAAGTGCAAGGGTCCCAACCTAACCATACCAGAGTTTACTTTGGAAGATTTCAAGAAGCATTCACACATTGCCACACCAACATCTGCAAAACCTCAAAGTGCAAGGTGGAAGAACTGTCTTTGCTCACCCACCACTCACGTTGGATCATTTCGTTGCAGACACCACAGGAATTCAGGTCTTCCCCGCGGTGGTTCTGTTGGCTCCAACCTCTCCAACTATGCAGAGCTGGCCGGTGCTAGTAAGCAGAGTCCCCTTAATGACTCGGTTGAAGCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.61

Weight (kDa)

9.7

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015840)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13227
fragaria_vesca FvH4_3g42280 FvH4_3g42280
malus_domestica MD03G1035000.v1.1
prunus_persica Prupe.6G028200_v2.0.a1
pyrus_communis pycom03g02720 pycom11g03060
rosa_chinensis RchiOBHm_Chr5g0075611
rosa_roxburghii Rroxscaffold_1G00005960
rosa_rugosa Rorug05G0441700
rosa_samantha Rh5AG498000 Rh5BG519000 Rh5CG542600 Rh5DG530100
rosa_wichuraiana Rw5G046190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AciI CCGC 2 cut(s) 226, 228
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 94, 311
AluBI AGCT 2 cut(s) 268, 314
AluI AGCT 2 cut(s) 268, 314
AlwI GGATC 1 cut(s) 193
AoxI GGCC 1 cut(s) 270
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 212
BccI CCATC 1 cut(s) 7
BfaI CTAG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 3 cut(s) 54, 55, 244
BpiI GAAGAC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 39, 276
BslI CCNNNNNNNGG 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 39, 276
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 2 cut(s) 226, 228
BspANI GGCC 1 cut(s) 272
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 3 cut(s) 54, 55, 244
BspPI GGATC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 6, 315
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 228
BstKTI GATC 1 cut(s) 188
BstMBI GATC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstUI CGCG 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 53
Cfr42I CCGCGG 1 cut(s) 229
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviJI RGCY 5 cut(s) 5, 243, 268, 272, 314
CviKI_1 RGCY 5 cut(s) 5, 243, 268, 272, 314
DdeI CTNAG 2 cut(s) 6, 315
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 211
FaiI YATR 2 cut(s) 68, 261
FaqI GGGAC 2 cut(s) 39, 276
FauI CCCGC 1 cut(s) 233
FokI GGATG 1 cut(s) 52
FspBI CTAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 273
HinfI GANTC 2 cut(s) 289, 302
HpaII CCGG 1 cut(s) 273
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 5 cut(s) 48, 128, 143, 198, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 6, 315
HpySE526I ACGT 1 cut(s) 180
KflI GGGWCCC 1 cut(s) 53
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 84, 193, 201, 254, 286
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 5 cut(s) 22, 31, 98, 163, 212
MluCI AATT 1 cut(s) 211
MlyI GAGTC 2 cut(s) 296, 298
MmeI TCCRAC 3 cut(s) 163, 270, 279
MnlI CCTC 3 cut(s) 43, 144, 260
MseI TTAA 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 100
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 1 cut(s) 185
NlaIV GGNNCC 3 cut(s) 54, 55, 244
PctI GAATGC 1 cut(s) 100
PleI GAGTC 2 cut(s) 296, 297
PpsI GAGTC 2 cut(s) 296, 297
PpuMI RGGWCCY 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 53
PspN4I GGNNCC 3 cut(s) 54, 55, 244
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
SacII CCGCGG 1 cut(s) 229
SaqAI TTAA 1 cut(s) 297
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 2 cut(s) 296, 298
SetI ASST 9 cut(s) 35, 63, 136, 149, 183, 220, 252, 270, 316
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 211
SsiI CCGC 2 cut(s) 226, 228
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 183
TasI AATT 1 cut(s) 211
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TspDTI ATGAA 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 211
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.