Rorug05G0441700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015840
Physical Location & Seq
Reverse (-)
61388716 .. 61390668
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0441700.1

Sequence Viewer

Length: 1803 bp
ATGATACGGAGCACTGCTTCTTCTTGCTATGGCAACAGAGGTCTTCACTCTTCTACTCTTGTTTTTTTCGTCACTAATAACTTAGCCTCGTTTCATTCGCGACCCTCAAAACCCATCAATCTTAGAATCACTACCCAACTAGAGCAGCATTTTAGAGACCCACCCATGCTCAAAGTCTCTAATGTTAAGGATGCCTTGAAGCTGTTCGATGAAATGCTTCAAAGGCACCCTCTTCCTTCCATTGTCCGTTTCAATCAAATGTTGGGTCAACTCGTGAAAATGAAGCACTGTTTGGAAGTTATTGGTTTGTATAAACAAATGGGTTTGAGGAGAATCCATCCTGATATTTATACTCTAACGATCATCATTAACTGCTATTGTCATTTGAACCAAATGGGGTTTGGTTTATCTGTCTTTGGTCACTTCTTCAAATGTGGATTCGAACCAAATGTCACCACCCTCAATACTCTCATCAAGGGCTTTCTTCTTGCGGGTAGAGTTGCTGAAGCAACAGCAATTTTCAGAAGAATGGTGGAGGGAGAGTATTGTAAGCCCGATGTGGTCACCTTCAACACACTAACAAAGGGCTTGTGCCTCAAGGGCAACAATAATGGAGCTCTTCAATTGCTTAGGAAGATGGAACTATCTCCAGACTGTAAGCCTGATGTAGTTTCTTATAACACCATCATTGACAGCCTTTGTAAGGATGCACAAATTGTTGATGCAATGAACCTCTTCTCTGAAATGCTCGGTAAGGGTATCACCACAGACGTCTTTACCTATACCTCTTTAATTCATGGAGTTTGCAGATTAGGCCAGTGGAAACAAGCTATGAGGTTGTTGAATGAAATGGTCAGTAAAAAGATCTTTCCAAATGTGCACACCTACACCGTCCTGGTAGATGCACTTTGTAAGGAGGGGATGGCAGTGGAAGCAAAAGGCGTGATTGAGATGATGGTTGAAAGAGATCTTGAACCTAATGCAGTTACATACAGTGCACTTATGGATGGATACTGTTTGAGAGGCGACATGGGAGAGGCAAGAGAAGTCTTCAATCTAATGGTTAGGAAGGGCTCAATGGTCAATGCTTATAGTTATAACATATTGATAAACGGGTATTGTAGGCATAAAAAGATCGAAAATGCCGTGACTCTTTTCCAGGAAATGTCTTGTAAGGGACTGGTGCCGGATACCATTATTTATACCACTCTTATAGATGGTTTTTGCAAAGTGGGGAGAATACAAGATGCCAGAAAGTTGTTCTCTAGGATGCAAGGTTGTGGCCAACTTCCAGATGTTCAAACTTATGCTGTTTTACTGGATGGCTTATGCAAAAACCAACAACTTGATATGGCTATAGAATTGTTTAGAGAAATGGGAGACAAGAAGGTGGAGCCAAATATTGTAGTTTACAATATTCTTATCGAAGGTTTGTGCATAGCTGGGAAACTTGAATCTGCTAGAGACCTCTTCTTCAGTTTATCATCGAAGGGACTTCCACCTCAGGTGAGAACGTATAACATAATGATTGGTGGACTTTCTGATGGGGGCCTAATTGGTGAAGCAGAAACATTGCTTGGAGGTATGGAAGAAAAAGGCTGTTCTCCAAACGATTGTACGTATAATACAATTATCCGAGGGTTTATCAATAACAATGAGATACCAAGAGCTATCAGACTCATTCAAGAAATGGTGGAGAGGGGATTATCTGCAGATGCATCAACTATGGAATTGATTGTTGATCTATTGTCTAGAGATAATGTAGATACTGCTTTGTTGGCTTTCTTTAAAAAATCATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

600

Amino Acids

67.16

Weight (kDa)

8.27

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 79 - 128 3.4e-08 PPR repeat family
PPR_3 PF13812 145 - 193 2.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 146 - 178 1.3e-07 PPR repeat
PPR_2 PF13041 149 - 198 1.5e-10 PPR repeat family
PPR_1 PF12854 183 - 214 2.4e-10 PPR repeat
PPR_3 PF13812 184 - 231 5.4e-06 Pentatricopeptide repeat domain
PPR_long PF17177 205 - 335 1.4e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 219 - 249 2.3e-11 PPR repeat
PPR_2 PF13041 221 - 270 1.3e-17 PPR repeat family
PPR PF01535 224 - 254 3.5e-06 PPR repeat
PPR_3 PF13812 245 - 303 9.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 252 - 285 1.2e-10 PPR repeat
PPR_2 PF13041 257 - 305 1.5e-18 PPR repeat family
PPR PF01535 259 - 288 3.9e-07 PPR repeat
PPR_1 PF12854 289 - 320 7.3e-07 PPR repeat
PPR_2 PF13041 299 - 339 8.5e-09 PPR repeat family
PPR_3 PF13812 316 - 373 1.1e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 323 - 355 8.1e-10 PPR repeat
PPR_2 PF13041 326 - 375 5.3e-16 PPR repeat family
PPR PF01535 329 - 358 4.3e-08 PPR repeat
PPR_long PF17177 341 - 476 1.1e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 357 - 390 7.5e-10 PPR repeat
PPR_2 PF13041 362 - 398 8.1e-11 PPR repeat family
PPR PF01535 364 - 394 1.1e-08 PPR repeat
PPR_3 PF13812 385 - 441 1.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 392 - 425 7.8e-13 PPR repeat
PPR_2 PF13041 396 - 445 1.6e-16 PPR repeat family
PPR PF01535 400 - 428 1.5e-07 PPR repeat
TPR_24 PF23276 400 - 491 3.3e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 428 - 459 2.2e-08 PPR repeat
PPR_2 PF13041 439 - 479 9.4e-13 PPR repeat family
PPR_3 PF13812 455 - 511 7.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 463 - 491 3.4e-08 PPR repeat
PPR_2 PF13041 466 - 514 4.2e-13 PPR repeat family
PPR_2 PF13041 503 - 549 2.4e-11 PPR repeat family
PPR_1 PF12854 532 - 565 3.5e-07 PPR repeat
PPR_2 PF13041 539 - 581 3.7e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015840)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13227
fragaria_vesca FvH4_3g42280 FvH4_3g42280
malus_domestica MD03G1035000.v1.1
prunus_persica Prupe.6G028200_v2.0.a1
pyrus_communis pycom03g02720 pycom11g03060
rosa_chinensis RchiOBHm_Chr5g0075611
rosa_roxburghii Rroxscaffold_1G00005960
rosa_rugosa Rorug05G0441700
rosa_samantha Rh5AG498000 Rh5BG519000 Rh5CG542600 Rh5DG530100
rosa_wichuraiana Rw5G046190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 678, 1098
AatII GACGTC 1 cut(s) 774
AccB1I GGYRCC 2 cut(s) 225, 1183
AccII CGCG 1 cut(s) 100
AciI CCGC 1 cut(s) 491
AcoI YGGCCR 1 cut(s) 1282
AcuI CTGAAG 2 cut(s) 525, 1459
AcyI GRCGYC 1 cut(s) 771
AfaI GTAC 1 cut(s) 1618
AfiI CCNNNNNNNGG 1 cut(s) 703
AjnI CCWGG 2 cut(s) 894, 1158
AjuI GAANNNNNNNTTGG 4 cut(s) 275, 307, 1560, 1592
AluBI AGCT 5 cut(s) 202, 617, 830, 1442, 1670
AluI AGCT 5 cut(s) 202, 617, 830, 1442, 1670
Alw21I GWGCWC 4 cut(s) 14, 619, 882, 1000
Alw26I GTCTC 4 cut(s) 150, 181, 1374, 1458
Alw44I GTGCAC 2 cut(s) 878, 996
AoxI GGCC 3 cut(s) 814, 1282, 1549
ApaLI GTGCAC 2 cut(s) 878, 996
ApeKI GCWGC 1 cut(s) 145
ArsI GACNNNNNNTTYG 4 cut(s) 250, 282, 435, 467
Asp700I GAANNNNTTC 3 cut(s) 203, 216, 734
AspS9I GGNCC 1 cut(s) 1549
AsuHPI GGTGA 5 cut(s) 445, 556, 754, 1519, 1571
AsuII TTCGAA 1 cut(s) 441
AxyI CCTNAGG 1 cut(s) 1503
BaeGI GKGCMC 2 cut(s) 882, 1000
BalI TGGCCA 1 cut(s) 1284
BanI GGYRCC 2 cut(s) 225, 1183
BanII GRGCYC 2 cut(s) 619, 1076
BauI CACGAG 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 35, 1042
Bbv12I GWGCWC 4 cut(s) 14, 619, 882, 1000
BbvI GCAGC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 1130
BciT130I CCWGG 2 cut(s) 896, 1160
BciVI GTATCC 2 cut(s) 1004, 1183
BcoDI GTCTC 4 cut(s) 150, 181, 1374, 1458
BfaI CTAG 4 cut(s) 140, 1266, 1461, 1752
BfmI CTRYAG 2 cut(s) 1356, 1710
BfuI GTATCC 2 cut(s) 1004, 1183
BglI GCCNNNNNGGC 1 cut(s) 600
BglII AGATCT 2 cut(s) 864, 967
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 896, 1160
BmgT120I GGNCC 1 cut(s) 1549
BmiI GGNNCC 4 cut(s) 227, 1185, 1395, 1550
BmrFI CCNGG 2 cut(s) 896, 1160
BmsI GCATC 8 cut(s) 181, 697, 712, 892, 1237, 1260, 1705, 1727
BpiI GAAGAC 2 cut(s) 35, 1042
BpmI CTGGAG 1 cut(s) 633
Bpu10I CCTNAGC 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 581
BsaAI YACGTR 1 cut(s) 1620
BsaHI GRCGYC 1 cut(s) 771
BsaI GGTCTC 2 cut(s) 150, 1458
BsaJI CCNNGG 1 cut(s) 1636
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 703
Bse1I ACTGG 3 cut(s) 817, 1185, 1323
Bse21I CCTNAGG 1 cut(s) 1503
Bse3DI GCAATG 2 cut(s) 732, 1571
BseBI CCWGG 2 cut(s) 896, 1160
BseDI CCNNGG 1 cut(s) 1636
BseGI GGATG 7 cut(s) 196, 337, 712, 927, 1012, 1275, 1327
BseLI CCNNNNNNNGG 1 cut(s) 703
BseMI GCAATG 2 cut(s) 732, 1571
BseMII CTCAG 1 cut(s) 1517
BseNI ACTGG 3 cut(s) 817, 1185, 1323
BseRI GAGGAG 1 cut(s) 343
BseSI GKGCMC 2 cut(s) 882, 1000
BseXI GCAGC 1 cut(s) 157
BseYI CCCAGC 1 cut(s) 1442
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 3 cut(s) 816, 1284, 1551
BshNI GGYRCC 2 cut(s) 225, 1183
BsiHKAI GWGCWC 4 cut(s) 14, 619, 882, 1000
BsiSI CCGG 1 cut(s) 1187
BslFI GGGAC 2 cut(s) 1191, 1506
BslI CCNNNNNNNGG 1 cut(s) 703
BsmAI GTCTC 4 cut(s) 150, 181, 1374, 1458
BsmFI GGGAC 2 cut(s) 1191, 1506
BsnI GGCC 3 cut(s) 816, 1284, 1551
Bso31I GGTCTC 2 cut(s) 150, 1458
Bsp119I TTCGAA 1 cut(s) 441
Bsp1286I GDGCHC 5 cut(s) 14, 619, 882, 1000, 1076
Bsp143I GATC 5 cut(s) 360, 864, 967, 1134, 1741
Bsp68I TCGCGA 1 cut(s) 100
BspACI CCGC 1 cut(s) 491
BspANI GGCC 3 cut(s) 816, 1284, 1551
BspCNI CTCAG 1 cut(s) 1516
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 4 cut(s) 227, 1185, 1395, 1550
BspMAI CTGCAG 1 cut(s) 1714
BspQI GCTCTTC 1 cut(s) 624
BspT104I TTCGAA 1 cut(s) 441
BspT107I GGYRCC 2 cut(s) 225, 1183
BspTNI GGTCTC 2 cut(s) 150, 1458
BsrDI GCAATG 2 cut(s) 732, 1571
BsrI ACTGG 3 cut(s) 817, 1185, 1323
BssECI CCNNGG 1 cut(s) 1636
BssMI GATC 5 cut(s) 360, 864, 967, 1134, 1741
BssNI GRCGYC 1 cut(s) 771
BssSI CACGAG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 896, 1160
Bst4CI ACNGT 5 cut(s) 290, 656, 892, 995, 1016
Bst6I CTCTTC 5 cut(s) 55, 237, 624, 740, 1475
BstACI GRCGYC 1 cut(s) 771
BstBAI YACGTR 1 cut(s) 1620
BstBI TTCGAA 1 cut(s) 441
BstDEI CTNAG 4 cut(s) 82, 122, 629, 1503
BstEII GGTNACC 1 cut(s) 562
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 7 cut(s) 196, 337, 712, 927, 1012, 1275, 1327
BstFNI CGCG 1 cut(s) 100
BstKTI GATC 5 cut(s) 363, 867, 970, 1137, 1744
BstMAI GTCTC 4 cut(s) 150, 181, 1374, 1458
BstMBI GATC 5 cut(s) 360, 864, 967, 1134, 1741
BstMWI GCNNNNNNNGC 5 cut(s) 223, 600, 813, 932, 1778
BstNI CCWGG 2 cut(s) 896, 1160
BstPI GGTNACC 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 894, 1158
BstSFI CTRYAG 2 cut(s) 1356, 1710
BstSLI GKGCMC 2 cut(s) 882, 1000
BstSNI TACGTA 1 cut(s) 1620
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 2 cut(s) 35, 1042
BstX2I RGATCY 2 cut(s) 864, 967
BstYI RGATCY 2 cut(s) 864, 967
Bsu36I CCTNAGG 1 cut(s) 1503
BsuI GTATCC 2 cut(s) 1004, 1183
BsuRI GGCC 3 cut(s) 816, 1284, 1551
BtsCI GGATG 7 cut(s) 196, 337, 712, 927, 1012, 1275, 1327
BtsI GCAGTG 2 cut(s) 12, 933
BtsIMutI CAGTG 5 cut(s) 12, 286, 824, 933, 1000
BtuMI TCGCGA 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 1549
Csp6I GTAC 1 cut(s) 1617
CviAII CATG 3 cut(s) 166, 797, 1030
CviQI GTAC 1 cut(s) 1617
DdeI CTNAG 4 cut(s) 82, 122, 629, 1503
DpnI GATC 5 cut(s) 362, 866, 969, 1136, 1743
DpnII GATC 5 cut(s) 360, 864, 967, 1134, 1741
DraI TTTAAA 1 cut(s) 1789
EaeI YGGCCR 1 cut(s) 1282
Eam1104I CTCTTC 5 cut(s) 55, 237, 624, 740, 1475
EarI CTCTTC 5 cut(s) 55, 237, 624, 740, 1475
Ecl136II GAGCTC 1 cut(s) 617
Eco105I TACGTA 1 cut(s) 1620
Eco24I GRGCYC 2 cut(s) 619, 1076
Eco31I GGTCTC 2 cut(s) 150, 1458
Eco53kI GAGCTC 1 cut(s) 617
Eco57I CTGAAG 2 cut(s) 525, 1459
Eco81I CCTNAGG 1 cut(s) 1503
Eco91I GGTNACC 1 cut(s) 562
EcoICRI GAGCTC 1 cut(s) 617
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoO109I RGGNCCY 1 cut(s) 1549
EcoO65I GGTNACC 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 894, 1158
EcoT22I ATGCAT 1 cut(s) 1720
EcoT38I GRGCYC 2 cut(s) 619, 1076
FaeI CATG 3 cut(s) 169, 800, 1033
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 2 cut(s) 1191, 1506
FatI CATG 3 cut(s) 165, 796, 1029
FauI CCCGC 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 7 cut(s) 203, 324, 719, 934, 1019, 1282, 1334
FriOI GRGCYC 2 cut(s) 619, 1076
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 4 cut(s) 140, 1266, 1461, 1752
GluI GCNGC 1 cut(s) 146
GsaI CCCAGC 1 cut(s) 1446
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 3 cut(s) 816, 1284, 1551
HapII CCGG 1 cut(s) 1187
Hin1I GRCGYC 1 cut(s) 771
Hin1II CATG 3 cut(s) 169, 800, 1033
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HinfI GANTC 6 cut(s) 126, 333, 438, 1150, 1454, 1677
HpaII CCGG 1 cut(s) 1187
HphI GGTGA 5 cut(s) 445, 556, 754, 1519, 1571
Hpy166II GTNNAC 5 cut(s) 269, 880, 998, 1411, 1535
Hpy188I TCNGA 5 cut(s) 524, 742, 1543, 1637, 1676
Hpy188III TCNNGA 8 cut(s) 99, 274, 341, 650, 971, 1292, 1685, 1752
Hpy8I GTNNAC 5 cut(s) 269, 880, 998, 1411, 1535
HpyAV CCTTC 6 cut(s) 246, 577, 1063, 1381, 1421, 1483
HpyCH4III ACNGT 5 cut(s) 290, 656, 892, 995, 1016
HpyCH4IV ACGT 3 cut(s) 771, 1514, 1619
HpyF10VI GCNNNNNNNGC 5 cut(s) 223, 600, 813, 932, 1778
HpyF3I CTNAG 4 cut(s) 82, 122, 629, 1503
HpySE526I ACGT 3 cut(s) 771, 1514, 1619
Hsp92I GRCGYC 1 cut(s) 771
Hsp92II CATG 3 cut(s) 169, 800, 1033
Kzo9I GATC 5 cut(s) 360, 864, 967, 1134, 1741
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 3 cut(s) 9, 614, 1393
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 8 cut(s) 181, 697, 712, 892, 1237, 1260, 1705, 1727
MaeI CTAG 4 cut(s) 140, 1266, 1461, 1752
MaeII ACGT 3 cut(s) 771, 1514, 1619
MaeIII GTNAC 6 cut(s) 70, 419, 451, 562, 985, 1147
MalI GATC 5 cut(s) 362, 866, 969, 1136, 1743
MboI GATC 5 cut(s) 360, 864, 967, 1134, 1741
MfeI CAATTG 1 cut(s) 623
MflI RGATCY 2 cut(s) 864, 967
MhlI GDGCHC 5 cut(s) 14, 619, 882, 1000, 1076
MlsI TGGCCA 1 cut(s) 1284
MluCI AATT 8 cut(s) 516, 623, 714, 792, 1361, 1554, 1629, 1730
MluNI TGGCCA 1 cut(s) 1284
MlyI GAGTC 2 cut(s) 1144, 1671
Mox20I TGGCCA 1 cut(s) 1284
Mph1103I ATGCAT 1 cut(s) 1720
MroXI GAANNNNTTC 3 cut(s) 203, 216, 734
MscI TGGCCA 1 cut(s) 1284
MseI TTAA 4 cut(s) 186, 369, 791, 1788
Msp20I TGGCCA 1 cut(s) 1284
MspI CCGG 1 cut(s) 1187
MspR9I CCNGG 2 cut(s) 896, 1160
MunI CAATTG 1 cut(s) 623
MvaI CCWGG 2 cut(s) 896, 1160
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 5 cut(s) 223, 600, 813, 932, 1778
NdeII GATC 5 cut(s) 360, 864, 967, 1134, 1741
NlaIII CATG 3 cut(s) 169, 800, 1033
NlaIV GGNNCC 4 cut(s) 227, 1185, 1395, 1550
NmuCI GTSAC 5 cut(s) 70, 419, 451, 562, 1147
NruI TCGCGA 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 1720
NspV TTCGAA 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 1143
PdmI GAANNNNTTC 3 cut(s) 203, 216, 734
PfeI GAWTC 4 cut(s) 126, 333, 438, 1454
PfoI TCCNGGA 1 cut(s) 1158
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 2 cut(s) 1144, 1671
PpsI GAGTC 2 cut(s) 1144, 1671
Ppu21I YACGTR 1 cut(s) 1620
PsiI TTATAA 2 cut(s) 678, 1098
Psp124BI GAGCTC 1 cut(s) 619
Psp6I CCWGG 2 cut(s) 894, 1158
PspEI GGTNACC 1 cut(s) 562
PspFI CCCAGC 1 cut(s) 1442
PspGI CCWGG 2 cut(s) 894, 1158
PspN4I GGNNCC 4 cut(s) 227, 1185, 1395, 1550
PspPI GGNCC 1 cut(s) 1549
PstI CTGCAG 1 cut(s) 1714
PsuI RGATCY 2 cut(s) 864, 967
RruI TCGCGA 1 cut(s) 100
RsaI GTAC 1 cut(s) 1618
RsaNI GTAC 1 cut(s) 1617
SacI GAGCTC 1 cut(s) 619
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 4 cut(s) 186, 369, 791, 1788
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 5 cut(s) 360, 864, 967, 1134, 1741
Sau96I GGNCC 1 cut(s) 1549
SchI GAGTC 2 cut(s) 1144, 1671
ScrFI CCNGG 2 cut(s) 896, 1160
SduI GDGCHC 5 cut(s) 14, 619, 882, 1000, 1076
SfaNI GCATC 8 cut(s) 181, 697, 712, 892, 1237, 1260, 1705, 1727
SfcI CTRYAG 2 cut(s) 1356, 1710
SfuI TTCGAA 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
SnaBI TACGTA 1 cut(s) 1620
Sse9I AATT 8 cut(s) 516, 623, 714, 792, 1361, 1554, 1629, 1730
SsiI CCGC 1 cut(s) 491
SspI AATATT 2 cut(s) 1402, 1417
SspMI CTAG 4 cut(s) 140, 1266, 1461, 1752
SstI GAGCTC 1 cut(s) 619
StyD4I CCNGG 2 cut(s) 894, 1158
TaaI ACNGT 5 cut(s) 290, 656, 892, 995, 1016
TaiI ACGT 3 cut(s) 774, 1517, 1622
TaqI TCGA 5 cut(s) 207, 441, 1137, 1425, 1487
TasI AATT 8 cut(s) 516, 623, 714, 792, 1361, 1554, 1629, 1730
TfiI GAWTC 4 cut(s) 126, 333, 438, 1454
Tru1I TTAA 4 cut(s) 186, 369, 791, 1788
Tru9I TTAA 4 cut(s) 186, 369, 791, 1788
TscAI CASTG 5 cut(s) 19, 293, 824, 933, 1000
TseFI GTSAC 5 cut(s) 70, 419, 451, 562, 1147
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 5 cut(s) 70, 419, 451, 562, 1147
TspDTI ATGAA 6 cut(s) 83, 225, 296, 743, 785, 861
TspGWI ACGGA 2 cut(s) 22, 236
TspRI CASTG 5 cut(s) 19, 293, 824, 933, 1000
VneI GTGCAC 2 cut(s) 878, 996
XagI CCTNNNNNAGG 1 cut(s) 701
XbaI TCTAGA 1 cut(s) 1751
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XmnI GAANNNNTTC 3 cut(s) 203, 216, 734
XspI CTAG 4 cut(s) 140, 1266, 1461, 1752
ZraI GACGTC 1 cut(s) 772
Zsp2I ATGCAT 1 cut(s) 1720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.