pycom03g02720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015840
Physical Location & Seq
Forward (+)
2104172 .. 2104492
321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02720.1

Sequence Viewer

Length: 321 bp
ATGGCTGAAAATATGGAGCAAAATCCCCGAATCACAAGGATCAAGTACAAGGGTCAAAGCCTAACCATACCAGAATTTAGCCTAGAGGATTTAAAGAAGCATACTCACATGCTTGTTTCACCAACATCACAAGATACTCTAAAATCATCAGGGTGGAAAAACTGCCTCTGCTCCCCAACCACTCATCCTGGCTCATTCCGCTGCAGACAGCACCGAACTTCAAGCATCGGCTCAGGCCTCAACCGTGTAGGGGGCTCCGTTGGCTCCAACCTCTCGGAGCTCGCAAACCGAAAACTACAATCTAGTCGCCTTAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

9.85

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015840)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13227
fragaria_vesca FvH4_3g42280 FvH4_3g42280
malus_domestica MD03G1035000.v1.1
prunus_persica Prupe.6G028200_v2.0.a1
pyrus_communis pycom03g02720 pycom11g03060
rosa_chinensis RchiOBHm_Chr5g0075611
rosa_roxburghii Rroxscaffold_1G00005960
rosa_rugosa Rorug05G0441700
rosa_samantha Rh5AG498000 Rh5BG519000 Rh5CG542600 Rh5DG530100
rosa_wichuraiana Rw5G046190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 199
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 1 cut(s) 222
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw21I GWGCWC 1 cut(s) 282
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 111
BanII GRGCYC 2 cut(s) 257, 282
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 189
BfaI CTAG 2 cut(s) 83, 303
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 256, 265
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 188
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 250
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 257, 282
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 245
BspLI GGNNCC 2 cut(s) 256, 265
BspMAI CTGCAG 1 cut(s) 206
BspPI GGATC 1 cut(s) 47
BssMI GATC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 198, 261
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 109
CviJI RGCY 9 cut(s) 5, 60, 81, 192, 231, 237, 255, 264, 280
CviKI_1 RGCY 9 cut(s) 5, 60, 81, 192, 231, 237, 255, 264, 280
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 232
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DraI TTTAAA 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 237
Eco24I GRGCYC 2 cut(s) 257, 282
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 187
EcoT38I GRGCYC 2 cut(s) 257, 282
FaeI CATG 1 cut(s) 112
FaiI YATR 4 cut(s) 14, 68, 102, 110
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 1 cut(s) 171
FriOI GRGCYC 2 cut(s) 257, 282
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 2 cut(s) 83, 303
GluI GCNGC 1 cut(s) 202
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 1 cut(s) 112
HinfI GANTC 1 cut(s) 30
HphI GGTGA 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 261
HpyF3I CTNAG 1 cut(s) 232
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 5 cut(s) 16, 176, 260, 269, 277
LpnPI CCDG 5 cut(s) 84, 135, 174, 201, 219
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 234
MaeI CTAG 2 cut(s) 83, 303
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MhlI GDGCHC 2 cut(s) 257, 282
MluCI AATT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 4 cut(s) 79, 176, 248, 281
MseI TTAA 2 cut(s) 92, 312
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 198, 261
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 2 cut(s) 256, 265
NspI RCATGY 1 cut(s) 112
PceI AGGCCT 1 cut(s) 237
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 256, 265
PstI CTGCAG 1 cut(s) 206
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 151
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 92, 312
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 2 cut(s) 257, 282
SetI ASST 2 cut(s) 273, 282
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 74
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 1 cut(s) 199
SspMI CTAG 2 cut(s) 83, 303
SstI GAGCTC 1 cut(s) 282
StuI AGGCCT 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 245
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 92, 312
Tru9I TTAA 2 cut(s) 92, 312
TseI GCWGC 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 247
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 112
XspI CTAG 2 cut(s) 83, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.