AT3G13600

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
4444554 .. 4447660
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13600.2

Sequence Viewer

Length: 1818 bp
ATGGGTGTATCATTCTCCTGTCCGTTCGCAGAGCAAGACGACGTGGAAGCTGCTCTAGACTCTGTCACGGTTAAGTCCATAAGCTTTGGCGATGACGACGAATGCAAAACTCCTAAGAGATCTGTTAATTTCAATGACGGTACTTTAGAGCCCACGATTTTGAAATCTATGGGATCTGGTAAAATGGTTGTTGAGAAATCTGTTAGCTTGAAAGGGATGCAGCTAGAGAGAATGATCTCACTTAACAGGTCTGTTAAAGACAATGGCTTTGAGATTGCTAAAGAGTTCTCAGTTCTTGATCCGAGGAATCCGAAACACGAAGCTGCTATTAAGTTGCAGAAGGTTTATAAGAGCTTTCGTACTAGACGAAAGCTCGCTGATTGCGCTGTGCTTGTTGAGCAGAGCTGGTGGAAACTTTTGGATTTTGCTGAGTTGAAGAGAAGTTCTATATCTTTCTTTGATATTGAGAAACACGAAACCGCGATCTCAAGGTGGTCTAGAGCAAGAACTAGAGCAGCTAAAGTTGGTAAAGGTTTGTCAAAGAATGGAAAAGCTCAAAAGCTTGCTTTACAACACTGGCTTGAAGCGATTGACCCGAGACATCGGTATGGACACAACCTGCACTTTTACTACAACAAATGGCTCCATTGTCAGAGTAGAGAACCTTTCTTCTACTGGCTTGATATCGGCGAGGGGAAAGAGGTAAATCTTGTGGAGAAATGTCCGCGGTTGAAACTTCAACAACAGTGTATCAAATACCTTGGTCCGATGGAAAGAAAAGCTTATGAGGTGGTTGTGGAAGACGGCAAATTCTTCTACAAGCATAGTGGAGAGATTCTTCAAACTTCTGATATGGAAGATAGTGAATCCAAATGGATTTTTGTGCTAAGCACATCGAAAGTGTTATACGTCGGGAAGAAGAAGAAGGGTACGTTTCAACATTCAAGCTTCTTAGCTGGAGGAGCTACTGTTGCTGCAGGGAGATTAGTTGTTGAGAATGGTGTTCTTAAGGCTGTTTGGCCACATAGCGGACATTATCAACCTACAGAAGAGAATTTCATGGACTTTCTCTCTTTCCTCCGCGAGAATGATGTCGATATCACCGATGTAAAGATGAGTCCTACAGATGAAGATGAATTCTCTATTTACAAACAGAGAAGCACTCATATGAGAAACCATTCTTTAGAAGAGGATTTGGAGGCTGAGAAGACCATTTCCTTTCAAGATAAGGTTGATCCAAGTGGAGAAGAACAAACTCTGATGAGAAATGAGTCCATCTCAAGAAAGCAAAGCGATCTCGAGACACCGGAAAAGATGGAATCATTTAGCACATTTGGCGATGAAATCCAATCCGTGGGATCGAAGTCTACAAAAGTATCTGAAGACTACGATTCAGGTGACGATGAAGAGGAAGAAGAAGAGATGTTTGAGTTAGAACAAGAATCAATGCCTTCAGAGCAAAGCTCACCTAGAGGAGAAGAAAAAGAAGAAGGAGAAACCAAGGAGAGTGAAGTAGTGAAGATAACAGAAGAATCAATCCTAAAAAGGATCAATTCAAAGAAGGAAACTAAATCTTTCCAACTTGGGAAACAACTATCATGCAAATGGACAACAGGTGCAGGACCAAGAATCGGTTGTGTAAGAGATTATCCATCAGAGCTTCAGTTTCAAGCACTGGAACAAGTGAACTTGTCTCCGAGAAGTGCTTCTGTTTCAAGACTCTGTTTCTCTTCTTCATCGCAAACGCAAACGCCTCAAATGTCACCGTTATGGCGAGGAATGTCACTACCTACAGATATCACACTCACGAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

605

Amino Acids

68.94

Weight (kDa)

5.62

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012935)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
Acc36I ACCTGC 1 cut(s) 627
AccB7I CCANNNNNTGG 1 cut(s) 1354
AccI GTMKAC 1 cut(s) 1367
AccII CGCG 3 cut(s) 482, 727, 1083
AciI CCGC 5 cut(s) 480, 725, 727, 1029, 1081
AclWI GGATC 5 cut(s) 181, 293, 1229, 1366, 1556
AcoI YGGCCR 1 cut(s) 1019
AcsI RAATTY 4 cut(s) 809, 1054, 1136, 1810
AcuI CTGAAG 3 cut(s) 1401, 1437, 1646
AfaI GTAC 3 cut(s) 142, 361, 931
AfiI CCNNNNNNNGG 3 cut(s) 1028, 1354, 1631
AflII CTTAAG 1 cut(s) 1007
AjiI CACGTC 1 cut(s) 43
Alw26I GTCTC 3 cut(s) 592, 1295, 1698
AlwI GGATC 5 cut(s) 181, 293, 1229, 1366, 1556
Ama87I CYCGRG 2 cut(s) 595, 1298
AoxI GGCC 1 cut(s) 1019
ApeKI GCWGC 5 cut(s) 50, 220, 323, 515, 974
ApoI RAATTY 4 cut(s) 809, 1054, 1136, 1810
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
Asp700I GAANNNNTTC 2 cut(s) 1177, 1705
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 764, 1622
AsuHPI GGTGA 4 cut(s) 1093, 1409, 1458, 1755
AvaI CYCGRG 2 cut(s) 595, 1298
AvaII GGWCC 2 cut(s) 764, 1622
BaeI ACNNNNGTAYC 2 cut(s) 1359, 1392
BalI TGGCCA 1 cut(s) 1021
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 3 cut(s) 807, 1214, 1389
BbvI GCAGC 5 cut(s) 37, 232, 310, 527, 961
BccI CCATC 4 cut(s) 763, 1283, 1309, 1660
BceAI ACGGC 1 cut(s) 820
BcoDI GTCTC 3 cut(s) 592, 1295, 1698
BfaI CTAG 6 cut(s) 56, 224, 363, 498, 510, 1470
BfmI CTRYAG 4 cut(s) 975, 1044, 1122, 1791
BfrI CTTAAG 1 cut(s) 1007
BfuAI ACCTGC 1 cut(s) 627
BglII AGATCT 1 cut(s) 119
BisI GCNGC 5 cut(s) 51, 221, 324, 516, 975
BlpI GCTNAGC 1 cut(s) 887
BlsI GCNGC 5 cut(s) 52, 222, 325, 517, 976
Bme18I GGWCC 2 cut(s) 764, 1622
BmeT110I CYCGRG 2 cut(s) 595, 1298
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 764, 1622
BmiI GGNNCC 1 cut(s) 644
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 3 cut(s) 807, 1214, 1389
BplI GAGNNNNNCTC 6 cut(s) 1147, 1179, 1262, 1294, 1448, 1480
BpmI CTGGAG 1 cut(s) 978
Bpu1102I GCTNAGC 1 cut(s) 887
BpuEI CTTGAG 2 cut(s) 472, 1264
BsaJI CCNNGG 5 cut(s) 302, 725, 760, 1353, 1500
BsaWI WCCGGW 1 cut(s) 1306
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 1028, 1354, 1631
Bse1I ACTGG 3 cut(s) 581, 680, 1680
BseDI CCNNGG 5 cut(s) 302, 725, 760, 1353, 1500
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 1028, 1354, 1631
BseMII CTCAG 3 cut(s) 303, 420, 1194
BseNI ACTGG 3 cut(s) 581, 680, 1680
BseRI GAGGAG 2 cut(s) 975, 1488
BseXI GCAGC 5 cut(s) 37, 232, 310, 527, 961
BsgI GTGCAG 2 cut(s) 605, 1638
Bsh1236I CGCG 3 cut(s) 482, 727, 1083
BshFI GGCC 1 cut(s) 1021
BsiHKCI CYCGRG 2 cut(s) 595, 1298
BsiSI CCGG 1 cut(s) 1307
BslI CCNNNNNNNGG 3 cut(s) 1028, 1354, 1631
BsmAI GTCTC 3 cut(s) 592, 1295, 1698
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 1 cut(s) 1021
BsoBI CYCGRG 2 cut(s) 595, 1298
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 9 cut(s) 119, 173, 234, 298, 483, 1234, 1294, 1358, 1548
Bsp1720I GCTNAGC 1 cut(s) 887
BspACI CCGC 5 cut(s) 480, 725, 727, 1029, 1081
BspANI GGCC 1 cut(s) 1021
BspCNI CTCAG 3 cut(s) 302, 421, 1195
BspFNI CGCG 3 cut(s) 482, 727, 1083
BspLI GGNNCC 1 cut(s) 644
BspMAI CTGCAG 1 cut(s) 979
BspMI ACCTGC 1 cut(s) 627
BspPI GGATC 5 cut(s) 181, 293, 1229, 1366, 1556
BspTI CTTAAG 1 cut(s) 1007
BsrI ACTGG 3 cut(s) 581, 680, 1680
BssECI CCNNGG 5 cut(s) 302, 725, 760, 1353, 1500
BssMI GATC 9 cut(s) 119, 173, 234, 298, 483, 1234, 1294, 1358, 1548
BssT1I CCWWGG 2 cut(s) 760, 1500
Bst4CI ACNGT 5 cut(s) 70, 140, 747, 970, 1767
Bst6I CTCTTC 6 cut(s) 431, 1044, 1182, 1401, 1413, 1735
BstAFI CTTAAG 1 cut(s) 1007
BstC8I GCNNGC 2 cut(s) 375, 564
BstDEI CTNAG 6 cut(s) 114, 289, 429, 887, 952, 1203
BstDSI CCRYGG 2 cut(s) 725, 1353
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 3 cut(s) 482, 727, 1083
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 9 cut(s) 122, 176, 237, 301, 486, 1237, 1297, 1361, 1551
BstMAI GTCTC 3 cut(s) 592, 1295, 1698
BstMBI GATC 9 cut(s) 119, 173, 234, 298, 483, 1234, 1294, 1358, 1548
BstMWI GCNNNNNNNGC 6 cut(s) 383, 397, 962, 971, 1335, 1456
BstSFI CTRYAG 4 cut(s) 975, 1044, 1122, 1791
BstUI CGCG 3 cut(s) 482, 727, 1083
BstV1I GCAGC 5 cut(s) 37, 232, 310, 527, 961
BstV2I GAAGAC 3 cut(s) 807, 1214, 1389
BstX2I RGATCY 2 cut(s) 119, 173
BstYI RGATCY 2 cut(s) 119, 173
BsuRI GGCC 1 cut(s) 1021
BtgI CCRYGG 2 cut(s) 725, 1353
BtgZI GCGATG 3 cut(s) 105, 1353, 1722
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 574, 752, 1673
BveI ACCTGC 1 cut(s) 627
Cac8I GCNNGC 2 cut(s) 375, 564
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 764, 1622
Cfr42I CCGCGG 1 cut(s) 728
Csp6I GTAC 3 cut(s) 141, 360, 930
CspCI CAANNNNNGTGG 2 cut(s) 808, 843
CviAII CATG 2 cut(s) 1060, 1599
CviQI GTAC 3 cut(s) 141, 360, 930
DdeI CTNAG 6 cut(s) 114, 289, 429, 887, 952, 1203
DpnI GATC 9 cut(s) 121, 175, 236, 300, 485, 1236, 1296, 1360, 1550
DpnII GATC 9 cut(s) 119, 173, 234, 298, 483, 1234, 1294, 1358, 1548
EaeI YGGCCR 1 cut(s) 1019
Eam1104I CTCTTC 6 cut(s) 431, 1044, 1182, 1401, 1413, 1735
EarI CTCTTC 6 cut(s) 431, 1044, 1182, 1401, 1413, 1735
Eco130I CCWWGG 2 cut(s) 760, 1500
Eco24I GRGCYC 1 cut(s) 153
Eco32I GATATC 3 cut(s) 685, 1099, 1798
Eco47I GGWCC 2 cut(s) 764, 1622
Eco57I CTGAAG 3 cut(s) 1401, 1437, 1646
Eco88I CYCGRG 2 cut(s) 595, 1298
EcoRI GAATTC 2 cut(s) 1136, 1810
EcoRV GATATC 3 cut(s) 685, 1099, 1798
EcoT14I CCWWGG 2 cut(s) 760, 1500
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 2 cut(s) 760, 1500
FaeI CATG 2 cut(s) 1063, 1602
FalI AAGNNNNNCTT 2 cut(s) 766, 798
FatI CATG 2 cut(s) 1059, 1598
FauNDI CATATG 1 cut(s) 1167
FblI GTMKAC 1 cut(s) 1367
Fnu4HI GCNGC 5 cut(s) 51, 221, 324, 516, 975
FokI GGATG 1 cut(s) 229
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 51, 221, 324, 516, 975
FspBI CTAG 6 cut(s) 56, 224, 363, 498, 510, 1470
GlaI GCGC 1 cut(s) 385
GluI GCNGC 5 cut(s) 51, 221, 324, 516, 975
GsuI CTGGAG 1 cut(s) 978
HaeIII GGCC 1 cut(s) 1021
HapII CCGG 1 cut(s) 1307
HhaI GCGC 1 cut(s) 386
Hin1II CATG 2 cut(s) 1063, 1602
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HindIII AAGCTT 4 cut(s) 82, 560, 780, 946
HpaII CCGG 1 cut(s) 1307
HphI GGTGA 4 cut(s) 1093, 1409, 1458, 1755
Hpy166II GTNNAC 2 cut(s) 1368, 1687
Hpy8I GTNNAC 2 cut(s) 1368, 1687
Hpy99I CGWCG 3 cut(s) 44, 101, 914
HpyAV CCTTC 5 cut(s) 334, 919, 1461, 1484, 1555
HpyCH4III ACNGT 5 cut(s) 70, 140, 747, 970, 1767
HpyCH4IV ACGT 3 cut(s) 42, 909, 932
HpyCH4V TGCA 7 cut(s) 105, 220, 337, 622, 977, 1602, 1619
HpyF10VI GCNNNNNNNGC 6 cut(s) 383, 397, 962, 971, 1335, 1456
HpyF3I CTNAG 6 cut(s) 114, 289, 429, 887, 952, 1203
HpySE526I ACGT 3 cut(s) 42, 909, 932
Hsp92II CATG 2 cut(s) 1063, 1602
HspAI GCGC 1 cut(s) 384
KspI CCGCGG 1 cut(s) 728
Kzo9I GATC 9 cut(s) 119, 173, 234, 298, 483, 1234, 1294, 1358, 1548
LmnI GCTCC 2 cut(s) 648, 962
Lsp1109I GCAGC 5 cut(s) 37, 232, 310, 527, 961
LweI GCATC 1 cut(s) 207
MaeI CTAG 6 cut(s) 56, 224, 363, 498, 510, 1470
MaeII ACGT 3 cut(s) 42, 909, 932
MaeIII GTNAC 4 cut(s) 64, 1397, 1761, 1782
MalI GATC 9 cut(s) 121, 175, 236, 300, 485, 1236, 1296, 1360, 1550
MboI GATC 9 cut(s) 119, 173, 234, 298, 483, 1234, 1294, 1358, 1548
MflI RGATCY 2 cut(s) 119, 173
MhlI GDGCHC 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 1021
MluCI AATT 6 cut(s) 127, 809, 1054, 1136, 1552, 1810
MluNI TGGCCA 1 cut(s) 1021
MlyI GAGTC 4 cut(s) 53, 1126, 1280, 1713
MmeI TCCRAC 1 cut(s) 1603
Mox20I TGGCCA 1 cut(s) 1021
MroXI GAANNNNTTC 2 cut(s) 1177, 1705
MscI TGGCCA 1 cut(s) 1021
MseI TTAA 6 cut(s) 72, 126, 243, 255, 330, 1008
MslI CAYNNNNRTG 4 cut(s) 606, 1166, 1603, 1768
Msp20I TGGCCA 1 cut(s) 1021
MspA1I CMGCKG 1 cut(s) 727
MspCI CTTAAG 1 cut(s) 1007
MspI CCGG 1 cut(s) 1307
Mva1269I GAATGC 1 cut(s) 107
MvnI CGCG 3 cut(s) 482, 727, 1083
MwoI GCNNNNNNNGC 6 cut(s) 383, 397, 962, 971, 1335, 1456
NdeI CATATG 1 cut(s) 1167
NdeII GATC 9 cut(s) 119, 173, 234, 298, 483, 1234, 1294, 1358, 1548
NlaIII CATG 2 cut(s) 1063, 1602
NlaIV GGNNCC 1 cut(s) 644
NmuCI GTSAC 4 cut(s) 64, 1397, 1761, 1782
PaeR7I CTCGAG 1 cut(s) 1298
PcsI WCGNNNNNNNCGW 2 cut(s) 364, 1101
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 2 cut(s) 1177, 1705
PfeI GAWTC 8 cut(s) 307, 835, 866, 1319, 1391, 1442, 1532, 1629
PflFI GACNNNGTC 1 cut(s) 62
PflMI CCANNNNNTGG 1 cut(s) 1354
PkrI GCNGC 5 cut(s) 52, 222, 325, 517, 976
PleI GAGTC 4 cut(s) 53, 1125, 1279, 1713
PpsI GAGTC 4 cut(s) 53, 1125, 1279, 1713
PsiI TTATAA 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 644
PspPI GGNCC 2 cut(s) 764, 1622
PstI CTGCAG 1 cut(s) 979
PsuI RGATCY 2 cut(s) 119, 173
PsyI GACNNNGTC 1 cut(s) 62
RsaI GTAC 3 cut(s) 142, 361, 931
RsaNI GTAC 3 cut(s) 141, 360, 930
RseI CAYNNNNRTG 4 cut(s) 606, 1166, 1603, 1768
SacII CCGCGG 1 cut(s) 728
SaqAI TTAA 6 cut(s) 72, 126, 243, 255, 330, 1008
SatI GCNGC 5 cut(s) 51, 221, 324, 516, 975
Sau3AI GATC 9 cut(s) 119, 173, 234, 298, 483, 1234, 1294, 1358, 1548
Sau96I GGNCC 2 cut(s) 764, 1622
SchI GAGTC 4 cut(s) 53, 1126, 1280, 1713
SduI GDGCHC 1 cut(s) 153
SfaNI GCATC 1 cut(s) 207
SfcI CTRYAG 4 cut(s) 975, 1044, 1122, 1791
Sfr274I CTCGAG 1 cut(s) 1298
Sfr303I CCGCGG 1 cut(s) 728
SgrBI CCGCGG 1 cut(s) 728
SinI GGWCC 2 cut(s) 764, 1622
SlaI CTCGAG 1 cut(s) 1298
SmiMI CAYNNNNRTG 4 cut(s) 606, 1166, 1603, 1768
SmlI CTYRAG 4 cut(s) 487, 1007, 1279, 1298
SmoI CTYRAG 4 cut(s) 487, 1007, 1279, 1298
Sse9I AATT 6 cut(s) 127, 809, 1054, 1136, 1552, 1810
SsiI CCGC 5 cut(s) 480, 725, 727, 1029, 1081
SspMI CTAG 6 cut(s) 56, 224, 363, 498, 510, 1470
StyI CCWWGG 2 cut(s) 760, 1500
TaaI ACNGT 5 cut(s) 70, 140, 747, 970, 1767
TaiI ACGT 3 cut(s) 45, 912, 935
TaqI TCGA 4 cut(s) 896, 1095, 1299, 1361
TasI AATT 6 cut(s) 127, 809, 1054, 1136, 1552, 1810
TfiI GAWTC 8 cut(s) 307, 835, 866, 1319, 1391, 1442, 1532, 1629
Tru1I TTAA 6 cut(s) 72, 126, 243, 255, 330, 1008
Tru9I TTAA 6 cut(s) 72, 126, 243, 255, 330, 1008
TscAI CASTG 3 cut(s) 581, 752, 1680
TseFI GTSAC 4 cut(s) 64, 1397, 1761, 1782
TseI GCWGC 5 cut(s) 50, 220, 323, 515, 974
Tsp45I GTSAC 4 cut(s) 64, 1397, 1761, 1782
TspDTI ATGAA 7 cut(s) 1048, 1143, 1149, 1356, 1419, 1725, 1803
TspGWI ACGGA 2 cut(s) 12, 1342
TspRI CASTG 3 cut(s) 581, 752, 1680
Tth111I GACNNNGTC 1 cut(s) 62
Van91I CCANNNNNTGG 1 cut(s) 1354
Vha464I CTTAAG 1 cut(s) 1007
VpaK11BI GGWCC 2 cut(s) 764, 1622
XapI RAATTY 4 cut(s) 809, 1054, 1136, 1810
XbaI TCTAGA 2 cut(s) 55, 497
XhoI CTCGAG 1 cut(s) 1298
XmiI GTMKAC 1 cut(s) 1367
XmnI GAANNNNTTC 2 cut(s) 1177, 1705
XspI CTAG 6 cut(s) 56, 224, 363, 498, 510, 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.