Rorug05G0482800

calmodulin-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012935
Physical Location & Seq
Forward (+)
66396434 .. 66397931
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0482800.1

Sequence Viewer

Length: 1218 bp
ATGGAATATCAACAAGAGAGATGCCGCAGAGTGGTGCTAGTTCCTCTGCCCTTTCAAGGCCACGTAATCCCAATGCTTCATCTGGGCGCTATCCTTCATTCCAAAGGCTTTCACATCACAATCGCTCATACCCAGTTCAACTTTCCCAACAAGCTGAACTACCCTCATTTCGACTTTTTAGAGTTGTCCGATCGCATATGTGAGCAAAATATATCAGCCCACAACTTTATAGCCGTGATATCAGAAGAGGTGGCCAATTATCTAAGGATTCCTAGTATCATATTATCTACTAGCAGTGCAGCAAAGACGCTAAGTTACCTCGCAATTCCTAGGCTCCAAAACGATGGTTACATTCCCCTTCAAGATTCTATGATGTCGGAACTAGTACCAGGACTTCAACCACTTAGATTTAAAGACCTAACCATCACATATTTCAGAAATTTGGATGACTTACTACAACTGATAGCGAAAGCCCTTGATCGAAGGTCATCTTCAGCTGTCATCTGGAACACCATGGATTGCCTCGAGCAATCAACATTGACAAAGATCCAGCAGGAATACCAACTTCCGTTGTTCCCTATCGGCCCTCTCAACAAAACTGTTCCAGCCATATCCATCAGCTTGTTGAAAGAGGACCAGAGTTGCATTCCATGGCTTGACAAACAATCACACAACTCTGTCATCTATATAAGCCTCGGAAGCGCAGCATCCATGGACAATAAAGACCTGGTTGAAATGGCATGGGGTCTCTCCAACAGTGAGCAGCCTTTCTTGTGGGTGGTCCGAACGGACTCCACAGCACTGCCAGAAGGTTTCCACGAAGCTGTTGGAGTCAGGGGTTGCATAGTAAAATGGGCACCCCAAAAGGAAGTCTGGGCACACACTGCAGTTGGAGGGTTTTGGAGTCACTGTGGTTGGAATTCAACCATTGAGAGTATCTCTGAAGGAGTTCCGTTGATATGCCAACCTTATTTTGGGGACCAGCGAGTGAATGCAAGGTACTTGACCCAAGTTTGGGGAGTAGGATTAGAATGGGAGAGTGAGATGAACAGAGGAGAAATAGAGGGAGCTATAAGAAGGCTTATGGTGGGTAAAGAAGGAGAGCTGATAAGGGAAAGAGCAAAAGAATTGAAGGAGAAAATTGAATTCAGTATGAACCAGGGTGGTTCTTCCTACAATTCCTTGAATGATTTGGTGGACCTTATTTTATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

405

Amino Acids

45.82

Weight (kDa)

5.6

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 78 - 365 4.3e-29 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13600 AT3G13600
fragaria_vesca FvH4_3g45350
malus_domestica MD03G1005600.v1.1 MD11G1008300.v1.1
prunus_persica Prupe.6G005400_v2.0.a1
pyrus_communis pycom03g00580
rosa_chinensis RchiOBHm_Chr5g0083171
rosa_laevigata RLG00000037015
rosa_multiflora Rmu_sc0030211.1_g000001
rosa_roxburghii Rroxscaffold_1G00001350
rosa_rugosa Rorug05G0482700 Rorug05G0482800
rosa_samantha Rh5AG532400 Rh5BG559600 Rh5CG582400 Rh5DG568300
rosa_wichuraiana Rw5G050060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 856
AciI CCGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 3 cut(s) 439, 919, 1145
AcuI CTGAAG 2 cut(s) 477, 963
AfaI GTAC 2 cut(s) 387, 1001
AfiI CCNNNNNNNGG 5 cut(s) 31, 56, 974, 1014, 1015
AhlI ACTAGT 1 cut(s) 382
AjnI CCWGG 3 cut(s) 388, 726, 1158
AluBI AGCT 6 cut(s) 154, 497, 621, 824, 1070, 1105
AluI AGCT 6 cut(s) 154, 497, 621, 824, 1070, 1105
Alw26I GTCTC 1 cut(s) 752
AlwI GGATC 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 3 cut(s) 58, 252, 583
ApeKI GCWGC 3 cut(s) 299, 704, 763
ApoI RAATTY 3 cut(s) 439, 919, 1145
Asp700I GAANNNNTTC 1 cut(s) 948
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 2 cut(s) 89, 704
AspS9I GGNCC 5 cut(s) 584, 634, 781, 979, 1198
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 4 cut(s) 634, 781, 979, 1198
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 2 cut(s) 859, 880
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 856
BarI GAAGNNNNNNTAC 2 cut(s) 378, 410
BbvI GCAGC 3 cut(s) 311, 716, 775
BccI CCATC 3 cut(s) 338, 431, 623
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 3 cut(s) 390, 728, 1160
BcoDI GTCTC 1 cut(s) 752
BcuI ACTAGT 1 cut(s) 382
BfaI CTAG 5 cut(s) 38, 273, 291, 330, 383
BfmI CTRYAG 1 cut(s) 885
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 4 cut(s) 25, 300, 705, 764
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 4 cut(s) 26, 301, 706, 765
Bme1390I CCNGG 3 cut(s) 390, 728, 1160
Bme18I GGWCC 4 cut(s) 634, 781, 979, 1198
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 5 cut(s) 584, 634, 781, 979, 1198
BmiI GGNNCC 3 cut(s) 335, 858, 980
BmrFI CCNGG 3 cut(s) 390, 728, 1160
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 2 cut(s) 11, 716
BmuI ACTGGG 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 923, 955
BsaAI YACGTR 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 752
BsaJI CCNNGG 6 cut(s) 329, 513, 650, 694, 711, 1159
BsaXI ACNNNNNCTCC 2 cut(s) 895, 925
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 56, 974, 1014, 1015
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 3 cut(s) 390, 728, 1160
BseDI CCNNGG 6 cut(s) 329, 513, 650, 694, 711, 1159
BseGI GGATG 2 cut(s) 451, 707
BseLI CCNNNNNNNGG 5 cut(s) 31, 56, 974, 1014, 1015
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 1068
BseSI GKGCMC 2 cut(s) 859, 880
BseXI GCAGC 3 cut(s) 311, 716, 775
BsgI GTGCAG 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 3 cut(s) 60, 254, 585
BshNI GGYRCC 1 cut(s) 856
BsiEI CGRYCG 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 524
BslFI GGGAC 1 cut(s) 992
BslI CCNNNNNNNGG 5 cut(s) 31, 56, 974, 1014, 1015
BsmAI GTCTC 1 cut(s) 752
BsmFI GGGAC 1 cut(s) 992
BsmI GAATGC 2 cut(s) 645, 997
BsnI GGCC 3 cut(s) 60, 254, 585
Bso31I GGTCTC 1 cut(s) 752
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 859, 880
Bsp143I GATC 3 cut(s) 190, 478, 546
Bsp19I CCATGG 3 cut(s) 513, 650, 711
BspACI CCGC 1 cut(s) 25
BspANI GGCC 3 cut(s) 60, 254, 585
BspLI GGNNCC 3 cut(s) 335, 858, 980
BspMAI CTGCAG 1 cut(s) 889
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 856
BspTNI GGTCTC 1 cut(s) 752
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 6 cut(s) 329, 513, 650, 694, 711, 1159
BssMI GATC 3 cut(s) 190, 478, 546
BssT1I CCWWGG 4 cut(s) 329, 513, 650, 711
Bst2UI CCWGG 3 cut(s) 390, 728, 1160
Bst4CI ACNGT 3 cut(s) 601, 758, 911
Bst6I CTCTTC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 884
BstBAI YACGTR 1 cut(s) 64
BstDEI CTNAG 3 cut(s) 263, 311, 404
BstDSI CCRYGG 3 cut(s) 513, 650, 711
BstF5I GGATG 2 cut(s) 451, 707
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 704
BstKTI GATC 3 cut(s) 193, 481, 549
BstMAI GTCTC 1 cut(s) 752
BstMBI GATC 3 cut(s) 190, 478, 546
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 699, 884
BstNI CCWGG 3 cut(s) 390, 728, 1160
BstSCI CCNGG 3 cut(s) 388, 726, 1158
BstSFI CTRYAG 1 cut(s) 885
BstSLI GKGCMC 2 cut(s) 859, 880
BstV1I GCAGC 3 cut(s) 311, 716, 775
BstX2I RGATCY 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 3 cut(s) 60, 254, 585
BtgI CCRYGG 3 cut(s) 513, 650, 711
BtsCI GGATG 2 cut(s) 451, 707
BtsI GCAGTG 3 cut(s) 301, 800, 882
BtsIMutI CAGTG 5 cut(s) 301, 763, 800, 882, 907
CfoI GCGC 2 cut(s) 89, 704
Cfr13I GGNCC 5 cut(s) 584, 634, 781, 979, 1198
CseI GACGC 1 cut(s) 316
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 2 cut(s) 386, 1000
CviAII CATG 4 cut(s) 514, 651, 712, 741
CviQI GTAC 2 cut(s) 386, 1000
DdeI CTNAG 3 cut(s) 263, 311, 404
DpnI GATC 3 cut(s) 192, 480, 548
DpnII GATC 3 cut(s) 190, 478, 546
DraI TTTAAA 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 4 cut(s) 329, 513, 650, 711
Eco31I GGTCTC 1 cut(s) 752
Eco32I GATATC 1 cut(s) 240
Eco47I GGWCC 4 cut(s) 634, 781, 979, 1198
Eco57I CTGAAG 2 cut(s) 477, 963
Eco88I CYCGRG 1 cut(s) 524
EcoRI GAATTC 2 cut(s) 919, 1145
EcoRII CCWGG 3 cut(s) 388, 726, 1158
EcoRV GATATC 1 cut(s) 240
EcoT14I CCWWGG 4 cut(s) 329, 513, 650, 711
ErhI CCWWGG 4 cut(s) 329, 513, 650, 711
FaeI CATG 4 cut(s) 517, 654, 715, 744
FalI AAGNNNNNCTT 2 cut(s) 475, 507
FaqI GGGAC 1 cut(s) 992
FatI CATG 4 cut(s) 513, 650, 711, 740
FauNDI CATATG 1 cut(s) 197
Fnu4HI GCNGC 4 cut(s) 25, 300, 705, 764
FokI GGATG 2 cut(s) 458, 694
Fsp4HI GCNGC 4 cut(s) 25, 300, 705, 764
FspBI CTAG 5 cut(s) 38, 273, 291, 330, 383
GlaI GCGC 2 cut(s) 88, 703
GluI GCNGC 4 cut(s) 25, 300, 705, 764
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 3 cut(s) 60, 254, 585
HgaI GACGC 1 cut(s) 316
HhaI GCGC 2 cut(s) 89, 704
Hin1II CATG 4 cut(s) 517, 654, 715, 744
Hin6I GCGC 2 cut(s) 87, 702
HinP1I GCGC 2 cut(s) 87, 702
HinfI GANTC 5 cut(s) 268, 365, 791, 831, 904
Hpy166II GTNNAC 1 cut(s) 1198
Hpy188I TCNGA 7 cut(s) 190, 244, 379, 437, 698, 785, 943
Hpy188III TCNNGA 2 cut(s) 362, 505
Hpy8I GTNNAC 1 cut(s) 1198
HpyAV CCTTC 8 cut(s) 104, 368, 477, 803, 938, 1071, 1091, 1126
HpyCH4III ACNGT 3 cut(s) 601, 758, 911
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 5 cut(s) 299, 645, 843, 887, 995
HpyF10VI GCNNNNNNNGC 2 cut(s) 699, 884
HpyF3I CTNAG 3 cut(s) 263, 311, 404
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 4 cut(s) 517, 654, 715, 744
HspAI GCGC 2 cut(s) 87, 702
Kzo9I GATC 3 cut(s) 190, 478, 546
LmnI GCTCC 2 cut(s) 339, 1067
Lsp1109I GCAGC 3 cut(s) 311, 716, 775
LweI GCATC 2 cut(s) 11, 716
MabI ACCWGGT 1 cut(s) 726
MaeI CTAG 5 cut(s) 38, 273, 291, 330, 383
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 314, 347, 905
MalI GATC 3 cut(s) 192, 480, 548
MboI GATC 3 cut(s) 190, 478, 546
MboII GAAGA 3 cut(s) 257, 483, 1161
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 859, 880
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 8 cut(s) 256, 324, 439, 919, 1127, 1140, 1145, 1177
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 3 cut(s) 785, 840, 913
MmeI TCCRAC 5 cut(s) 357, 777, 808, 871, 896
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 948
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 497
MspR9I CCNGG 3 cut(s) 390, 728, 1160
Mva1269I GAATGC 2 cut(s) 645, 997
MvaI CCWGG 3 cut(s) 390, 728, 1160
MwoI GCNNNNNNNGC 2 cut(s) 699, 884
NcoI CCATGG 3 cut(s) 513, 650, 711
NdeI CATATG 1 cut(s) 197
NdeII GATC 3 cut(s) 190, 478, 546
NlaIII CATG 4 cut(s) 517, 654, 715, 744
NlaIV GGNNCC 3 cut(s) 335, 858, 980
NmuCI GTSAC 1 cut(s) 905
PaeR7I CTCGAG 1 cut(s) 524
PctI GAATGC 2 cut(s) 645, 997
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 2 cut(s) 268, 365
PkrI GCNGC 4 cut(s) 26, 301, 706, 765
Ple19I CGATCG 1 cut(s) 193
PleI GAGTC 3 cut(s) 785, 839, 912
PpsI GAGTC 3 cut(s) 785, 839, 912
Ppu21I YACGTR 1 cut(s) 64
Psp6I CCWGG 3 cut(s) 388, 726, 1158
PspGI CCWGG 3 cut(s) 388, 726, 1158
PspN4I GGNNCC 3 cut(s) 335, 858, 980
PspPI GGNCC 5 cut(s) 584, 634, 781, 979, 1198
PspXI VCTCGAGB 1 cut(s) 524
PstI CTGCAG 1 cut(s) 889
PsuI RGATCY 1 cut(s) 546
PvuI CGATCG 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 387, 1001
RsaNI GTAC 2 cut(s) 386, 1000
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 4 cut(s) 25, 300, 705, 764
Sau3AI GATC 3 cut(s) 190, 478, 546
Sau96I GGNCC 5 cut(s) 584, 634, 781, 979, 1198
SchI GAGTC 3 cut(s) 785, 840, 913
ScrFI CCNGG 3 cut(s) 390, 728, 1160
SduI GDGCHC 2 cut(s) 859, 880
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 2 cut(s) 11, 716
SfcI CTRYAG 1 cut(s) 885
Sfr274I CTCGAG 1 cut(s) 524
SinI GGWCC 4 cut(s) 634, 781, 979, 1198
SlaI CTCGAG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SpeI ACTAGT 1 cut(s) 382
Sse9I AATT 8 cut(s) 256, 324, 439, 919, 1127, 1140, 1145, 1177
SsiI CCGC 1 cut(s) 25
SspMI CTAG 5 cut(s) 38, 273, 291, 330, 383
StyD4I CCNGG 3 cut(s) 388, 726, 1158
StyI CCWWGG 4 cut(s) 329, 513, 650, 711
TaaI ACNGT 3 cut(s) 601, 758, 911
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 171, 481, 525
TasI AATT 8 cut(s) 256, 324, 439, 919, 1127, 1140, 1145, 1177
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 268, 365
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 5 cut(s) 301, 763, 807, 889, 914
TseFI GTSAC 1 cut(s) 905
TseI GCWGC 3 cut(s) 299, 704, 763
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 4 cut(s) 68, 86, 1061, 1169
TspGWI ACGGA 3 cut(s) 558, 803, 942
TspRI CASTG 5 cut(s) 301, 763, 807, 889, 914
VpaK11BI GGWCC 4 cut(s) 634, 781, 979, 1198
XapI RAATTY 3 cut(s) 439, 919, 1145
XcmI CCANNNNNNNNNTGG 2 cut(s) 824, 971
XhoI CTCGAG 1 cut(s) 524
XmaJI CCTAGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 5 cut(s) 38, 273, 291, 330, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.