Rorug05G0482700

calmodulin-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012935
Physical Location & Seq
Forward (+)
66391577 .. 66393290
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0482700.1

Sequence Viewer

Length: 1335 bp
ATGGAATATCGACAAGAGAGATGCCGCAGAGTGGTGCTGGTTCCTCTGCCCTTTCAAGGCCACATAACCCCAATGCTTTATCTGGGCACTATCCTTCATTCCAAAGGCTTTCACATCACAATCGCTCATACCCAGTTCAACTTTCCCAACCCGCTGAACTACCCTCATTTCGACTTCTTAAAGTTGTACGATGGCATATGTGAGCAAAATATATCAGCCCACAACTTTATAGCTGTGATATCAGGTTTCAACACCAACTGCAAAGGCCATCTCCGGGATTCGTTGGCTAGGATAATGGAGAAAGTGGATCAACACAATAAGATTGCTTGCATCATCTATGATGAATATATGTACTTTGCAGAAGAGGTGGCCAATTATCTAAGGATTCCTAGTATCATATTGTCTACTAGCAGTGCAGCAAAGACGCTAAGTTACCTTGCATATCCTAGGCTCCAAAACGATGGTTACATTCCCTGTCAAGATTCTATGATGTTGGAACTAGTACCAGGACTTGAACCACTTAGATTTAAAGACCTAACCATCACATATTTCAGAAATTGGGATGACTTGCTACAACATATAGCGAAAGCCCTTGATCGAAGGTCATCTTCAGCCATGATCTGGAACTCCATGGATTGCCTTGAGCAATCAACATTGAAAAAGATCCAGCAGGAATACCAACTTCCGTTGTTCCCCATTGGCCCTCTCAACAAAACTGTTCCGGCCATATCCATCAGCTTATTGAAAGAGGACCAGAGTTGCATTCCATGGCTTGACAAACAATCACACAACTCTATCATCTACATAAGCCTTGGAAGCACAGCTTCCATGGACAATAAAGACCTAGTTGAAATGGCATGGGGTCTCTCCAACAGCGAGCAGCCTTTCGTGTGGGTAGTCCGAATGGACTCCACAGAACTGCCAGAAGGTTTCCAAGAAGCTGTTGGAGACAGGGGTTGCATAGTAAAATGGGCACCCCAAAAGCAAGTCTTGGCACACACTGCAGTTGGAGGGTTTTGGAGTCACTGTGGTTGGAATTCAACCATTGAGAGTATCTCTGAAGGAGTTCCGTTAATATGCCAACCATATTATGGGGACCAGCGAGTGAATGCAAGGTACTTGACCCAAGTTTGGGGAGTAGGGTTAGAGTGGGAGAGTGAGATGAACAGAGGAGAAATAGAGGGAGCTATAAGAAGGCTTATGGTGGGTAAAGAAGGAGAGCTGATAAGGCAAAGAGCAAAAGATTTGAAGGAGAAAATTGAATCCAGTATGAACCAGGGTGGTTCTTCCTACAATTCCATGAATGATTTGGTGGACCTTATTTTGTCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

444

Amino Acids

50.67

Weight (kDa)

5.78

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 78 - 404 2.5e-31 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13600 AT3G13600
fragaria_vesca FvH4_3g45350
malus_domestica MD03G1005600.v1.1 MD11G1008300.v1.1
prunus_persica Prupe.6G005400_v2.0.a1
pyrus_communis pycom03g00580
rosa_chinensis RchiOBHm_Chr5g0083171
rosa_laevigata RLG00000037015
rosa_multiflora Rmu_sc0030211.1_g000001
rosa_roxburghii Rroxscaffold_1G00001350
rosa_rugosa Rorug05G0482700 Rorug05G0482800
rosa_samantha Rh5AG532400 Rh5BG559600 Rh5CG582400 Rh5DG568300
rosa_wichuraiana Rw5G050060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 973
AccB7I CCANNNNNTGG 2 cut(s) 621, 1091
AccI GTMKAC 1 cut(s) 404
AciI CCGC 2 cut(s) 25, 152
AclWI GGATC 2 cut(s) 315, 658
AcoI YGGCCR 2 cut(s) 369, 723
AcsI RAATTY 1 cut(s) 1036
AcuI CTGAAG 2 cut(s) 594, 1080
AfaI GTAC 4 cut(s) 188, 353, 504, 1118
AfiI CCNNNNNNNGG 7 cut(s) 31, 56, 274, 621, 1091, 1131, 1132
AhlI ACTAGT 1 cut(s) 499
AjnI CCWGG 2 cut(s) 505, 1275
AluBI AGCT 6 cut(s) 233, 738, 824, 941, 1187, 1222
AluI AGCT 6 cut(s) 233, 738, 824, 941, 1187, 1222
Alw26I GTCTC 2 cut(s) 869, 942
AlwI GGATC 2 cut(s) 315, 658
AoxI GGCC 5 cut(s) 58, 265, 369, 700, 723
ApeKI GCWGC 2 cut(s) 416, 880
ApoI RAATTY 1 cut(s) 1036
Asp700I GAANNNNTTC 1 cut(s) 1065
AspA2I CCTAGG 1 cut(s) 446
AspS9I GGNCC 4 cut(s) 701, 751, 1096, 1315
AsuC2I CCSGG 1 cut(s) 275
AvaII GGWCC 3 cut(s) 751, 1096, 1315
AvrII CCTAGG 1 cut(s) 446
BaeGI GKGCMC 2 cut(s) 89, 976
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 1 cut(s) 973
BbvI GCAGC 2 cut(s) 428, 892
BccI CCATC 5 cut(s) 185, 276, 455, 548, 740
BciT130I CCWGG 2 cut(s) 507, 1277
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 869, 942
BcuI ACTAGT 1 cut(s) 499
BfaI CTAG 6 cut(s) 288, 390, 408, 447, 500, 845
BfmI CTRYAG 1 cut(s) 1002
BisI GCNGC 3 cut(s) 25, 417, 881
BlnI CCTAGG 1 cut(s) 446
BlsI GCNGC 3 cut(s) 26, 418, 882
Bme1390I CCNGG 3 cut(s) 275, 507, 1277
Bme18I GGWCC 3 cut(s) 751, 1096, 1315
BmgT120I GGNCC 4 cut(s) 701, 751, 1096, 1315
BmiI GGNNCC 4 cut(s) 42, 452, 975, 1097
BmrFI CCNGG 3 cut(s) 275, 507, 1277
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 2 cut(s) 11, 339
BmuI ACTGGG 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 1040, 1072
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 869
BsaJI CCNNGG 6 cut(s) 446, 630, 767, 811, 828, 1276
BsaXI ACNNNNNCTCC 2 cut(s) 1012, 1042
Bsc4I CCNNNNNNNGG 7 cut(s) 31, 56, 274, 621, 1091, 1131, 1132
Bse1I ACTGG 2 cut(s) 133, 1266
BseBI CCWGG 2 cut(s) 507, 1277
BseDI CCNNGG 6 cut(s) 446, 630, 767, 811, 828, 1276
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 7 cut(s) 31, 56, 274, 621, 1091, 1131, 1132
BseNI ACTGG 2 cut(s) 133, 1266
BseRI GAGGAG 1 cut(s) 1185
BseSI GKGCMC 2 cut(s) 89, 976
BseXI GCAGC 2 cut(s) 428, 892
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 5 cut(s) 60, 267, 371, 702, 725
BshNI GGYRCC 1 cut(s) 973
BsiSI CCGG 2 cut(s) 274, 722
BslFI GGGAC 1 cut(s) 1109
BslI CCNNNNNNNGG 7 cut(s) 31, 56, 274, 621, 1091, 1131, 1132
BsmAI GTCTC 2 cut(s) 869, 942
BsmFI GGGAC 1 cut(s) 1109
BsmI GAATGC 2 cut(s) 762, 1114
BsnI GGCC 5 cut(s) 60, 267, 371, 702, 725
Bso31I GGTCTC 1 cut(s) 869
Bsp1286I GDGCHC 2 cut(s) 89, 976
Bsp143I GATC 4 cut(s) 307, 595, 618, 663
Bsp19I CCATGG 3 cut(s) 630, 767, 828
BspACI CCGC 2 cut(s) 25, 152
BspANI GGCC 5 cut(s) 60, 267, 371, 702, 725
BspLI GGNNCC 4 cut(s) 42, 452, 975, 1097
BspMAI CTGCAG 1 cut(s) 1006
BspPI GGATC 2 cut(s) 315, 658
BspT107I GGYRCC 1 cut(s) 973
BspTNI GGTCTC 1 cut(s) 869
BsrI ACTGG 2 cut(s) 133, 1266
BssECI CCNNGG 6 cut(s) 446, 630, 767, 811, 828, 1276
BssMI GATC 4 cut(s) 307, 595, 618, 663
BssT1I CCWWGG 5 cut(s) 446, 630, 767, 811, 828
Bst2UI CCWGG 2 cut(s) 507, 1277
Bst4CI ACNGT 2 cut(s) 718, 1028
Bst6I CTCTTC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstC8I GCNNGC 2 cut(s) 328, 878
BstDEI CTNAG 3 cut(s) 380, 428, 521
BstDSI CCRYGG 3 cut(s) 630, 767, 828
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 4 cut(s) 310, 598, 621, 666
BstMAI GTCTC 2 cut(s) 869, 942
BstMBI GATC 4 cut(s) 307, 595, 618, 663
BstMWI GCNNNNNNNGC 3 cut(s) 816, 1001, 1228
BstNI CCWGG 2 cut(s) 507, 1277
BstSCI CCNGG 3 cut(s) 273, 505, 1275
BstSFI CTRYAG 1 cut(s) 1002
BstSLI GKGCMC 2 cut(s) 89, 976
BstV1I GCAGC 2 cut(s) 428, 892
BstX2I RGATCY 1 cut(s) 663
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 663
BsuRI GGCC 5 cut(s) 60, 267, 371, 702, 725
BtgI CCRYGG 3 cut(s) 630, 767, 828
BtsCI GGATG 1 cut(s) 568
BtsI GCAGTG 2 cut(s) 418, 999
BtsIMutI CAGTG 3 cut(s) 418, 999, 1024
Cac8I GCNNGC 2 cut(s) 328, 878
Cfr13I GGNCC 4 cut(s) 701, 751, 1096, 1315
CseI GACGC 1 cut(s) 433
Csp6I GTAC 4 cut(s) 187, 352, 503, 1117
CviAII CATG 6 cut(s) 616, 631, 768, 829, 858, 1300
CviQI GTAC 4 cut(s) 187, 352, 503, 1117
DdeI CTNAG 3 cut(s) 380, 428, 521
DpnI GATC 4 cut(s) 309, 597, 620, 665
DpnII GATC 4 cut(s) 307, 595, 618, 663
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 2 cut(s) 369, 723
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 5 cut(s) 446, 630, 767, 811, 828
Eco31I GGTCTC 1 cut(s) 869
Eco32I GATATC 1 cut(s) 240
Eco47I GGWCC 3 cut(s) 751, 1096, 1315
Eco57I CTGAAG 2 cut(s) 594, 1080
EcoRI GAATTC 1 cut(s) 1036
EcoRII CCWGG 2 cut(s) 505, 1275
EcoRV GATATC 1 cut(s) 240
EcoT14I CCWWGG 5 cut(s) 446, 630, 767, 811, 828
ErhI CCWWGG 5 cut(s) 446, 630, 767, 811, 828
FaeI CATG 6 cut(s) 619, 634, 771, 832, 861, 1303
FalI AAGNNNNNCTT 6 cut(s) 592, 624, 808, 840, 974, 1006
FaqI GGGAC 1 cut(s) 1109
FatI CATG 6 cut(s) 615, 630, 767, 828, 857, 1299
FauI CCCGC 1 cut(s) 159
FauNDI CATATG 1 cut(s) 197
FblI GTMKAC 1 cut(s) 404
Fnu4HI GCNGC 3 cut(s) 25, 417, 881
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 3 cut(s) 25, 417, 881
FspBI CTAG 6 cut(s) 288, 390, 408, 447, 500, 845
GluI GCNGC 3 cut(s) 25, 417, 881
HaeIII GGCC 5 cut(s) 60, 267, 371, 702, 725
HapII CCGG 2 cut(s) 274, 722
HgaI GACGC 1 cut(s) 433
Hin1II CATG 6 cut(s) 619, 634, 771, 832, 861, 1303
HinfI GANTC 6 cut(s) 278, 385, 482, 908, 1021, 1262
HpaII CCGG 2 cut(s) 274, 722
Hpy166II GTNNAC 2 cut(s) 405, 1315
Hpy188I TCNGA 3 cut(s) 554, 902, 1060
Hpy188III TCNNGA 2 cut(s) 479, 622
Hpy8I GTNNAC 2 cut(s) 405, 1315
HpyAV CCTTC 7 cut(s) 104, 594, 920, 1055, 1188, 1208, 1243
HpyCH4III ACNGT 2 cut(s) 718, 1028
HpyCH4V TGCA 9 cut(s) 261, 330, 359, 416, 440, 762, 960, 1004, 1112
HpyF10VI GCNNNNNNNGC 3 cut(s) 816, 1001, 1228
HpyF3I CTNAG 3 cut(s) 380, 428, 521
Hsp92II CATG 6 cut(s) 619, 634, 771, 832, 861, 1303
Kzo9I GATC 4 cut(s) 307, 595, 618, 663
LmnI GCTCC 2 cut(s) 456, 1184
Lsp1109I GCAGC 2 cut(s) 428, 892
LweI GCATC 2 cut(s) 11, 339
MaeI CTAG 6 cut(s) 288, 390, 408, 447, 500, 845
MaeIII GTNAC 3 cut(s) 431, 464, 1022
MalI GATC 4 cut(s) 309, 597, 620, 665
MboI GATC 4 cut(s) 307, 595, 618, 663
MboII GAAGA 3 cut(s) 374, 600, 1278
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 89, 976
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 5 cut(s) 373, 556, 1036, 1257, 1294
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 2 cut(s) 902, 1030
MmeI TCCRAC 5 cut(s) 474, 894, 925, 988, 1013
MnlI CCTC 8 cut(s) 54, 174, 358, 714, 742, 1004, 1163, 1174
Mox20I TGGCCA 1 cut(s) 371
MroXI GAANNNNTTC 1 cut(s) 1065
MscI TGGCCA 1 cut(s) 371
MseI TTAA 3 cut(s) 179, 528, 1073
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 2 cut(s) 274, 722
MspR9I CCNGG 3 cut(s) 275, 507, 1277
Mva1269I GAATGC 2 cut(s) 762, 1114
MvaI CCWGG 2 cut(s) 507, 1277
MwoI GCNNNNNNNGC 3 cut(s) 816, 1001, 1228
NciI CCSGG 1 cut(s) 275
NcoI CCATGG 3 cut(s) 630, 767, 828
NdeI CATATG 1 cut(s) 197
NdeII GATC 4 cut(s) 307, 595, 618, 663
NlaIII CATG 6 cut(s) 619, 634, 771, 832, 861, 1303
NlaIV GGNNCC 4 cut(s) 42, 452, 975, 1097
NmuCI GTSAC 1 cut(s) 1022
PctI GAATGC 2 cut(s) 762, 1114
PdmI GAANNNNTTC 1 cut(s) 1065
PfeI GAWTC 4 cut(s) 278, 385, 482, 1262
PflMI CCANNNNNTGG 2 cut(s) 621, 1091
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 3 cut(s) 26, 418, 882
PleI GAGTC 2 cut(s) 902, 1029
PpsI GAGTC 2 cut(s) 902, 1029
Psp6I CCWGG 2 cut(s) 505, 1275
PspGI CCWGG 2 cut(s) 505, 1275
PspN4I GGNNCC 4 cut(s) 42, 452, 975, 1097
PspPI GGNCC 4 cut(s) 701, 751, 1096, 1315
PstI CTGCAG 1 cut(s) 1006
PsuI RGATCY 1 cut(s) 663
RsaI GTAC 4 cut(s) 188, 353, 504, 1118
RsaNI GTAC 4 cut(s) 187, 352, 503, 1117
SaqAI TTAA 3 cut(s) 179, 528, 1073
SatI GCNGC 3 cut(s) 25, 417, 881
Sau3AI GATC 4 cut(s) 307, 595, 618, 663
Sau96I GGNCC 4 cut(s) 701, 751, 1096, 1315
SchI GAGTC 2 cut(s) 902, 1030
ScrFI CCNGG 3 cut(s) 275, 507, 1277
SduI GDGCHC 2 cut(s) 89, 976
SfaNI GCATC 2 cut(s) 11, 339
SfcI CTRYAG 1 cut(s) 1002
SinI GGWCC 3 cut(s) 751, 1096, 1315
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SpeI ACTAGT 1 cut(s) 499
Sse9I AATT 5 cut(s) 373, 556, 1036, 1257, 1294
SsiI CCGC 2 cut(s) 25, 152
SspMI CTAG 6 cut(s) 288, 390, 408, 447, 500, 845
StyD4I CCNGG 3 cut(s) 273, 505, 1275
StyI CCWWGG 5 cut(s) 446, 630, 767, 811, 828
TaaI ACNGT 2 cut(s) 718, 1028
TaqI TCGA 3 cut(s) 10, 171, 598
TasI AATT 5 cut(s) 373, 556, 1036, 1257, 1294
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 4 cut(s) 278, 385, 482, 1262
Tru1I TTAA 3 cut(s) 179, 528, 1073
Tru9I TTAA 3 cut(s) 179, 528, 1073
TscAI CASTG 3 cut(s) 418, 1006, 1031
TseFI GTSAC 1 cut(s) 1022
TseI GCWGC 2 cut(s) 416, 880
Tsp45I GTSAC 1 cut(s) 1022
TspDTI ATGAA 5 cut(s) 86, 357, 1178, 1286, 1316
TspGWI ACGGA 2 cut(s) 675, 1059
TspRI CASTG 3 cut(s) 418, 1006, 1031
Van91I CCANNNNNTGG 2 cut(s) 621, 1091
VpaK11BI GGWCC 3 cut(s) 751, 1096, 1315
XapI RAATTY 1 cut(s) 1036
XcmI CCANNNNNNNNNTGG 3 cut(s) 941, 1088, 1306
XmaJI CCTAGG 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 1065
XspI CTAG 6 cut(s) 288, 390, 408, 447, 500, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.