AT3G14910

Rab3 GTPase-activating protein non-catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013168
Physical Location & Seq
Forward (+)
5015411 .. 5017861
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14910.1

Sequence Viewer

Length: 1368 bp
ATGGCGAAGAGGATCCACCTGACGGAACTAGGCTGCATCGCGTGTGAGGAACTTACTGAGCTCGGTGCGGGTAAAGAAGGATGGCTCGTGAACAATCCAAACCTTTTGAGTGCACTTGATTCTCACTCTTTAGCCCTAGCCAATCGATTTCTCATATTGATTGTGAATTGGGGTGATCCTGATGCGCCTCGTGTCAAGATCAGACCTGATCTGTCTCCGATTGAGGCTGAGTCGATTACGGCGATCGAGTGGTTAGTGTTTGATGATGTCAGAGTCGTCGTTGCGGGGACTTCTTGTGGATATCTCTTGGTTTACTCTGTTACCGGTGATCTGATCCATAAGCAGATTGTACATCAAAGCCGTATATTAAAAATAAGAGTTCGAGGAACTAAGAAAGATTTGATGCAAGAGACATCCTCTGAGGAGATTTGCATTGTATTGCCTGGTGTTATTGCCCGCTTTGATGGCTCTAACATTCAGAGTATGGTTCAGAAATGGGTTCAAGAGAAGAATTCGAACTTTTGGGACCAAAAGAATAGAAAGGGAGATGCAGAAGATACTGGTAGCTTGTACCAACGTCTACCGTATCAGATATGGAATGTCAACAAGAATGGTGTGTGTGTTGATGCTACTGTCACTGGCGTAATGCCTCCTCCGTTACTGGAACTCCAGTCAAGTCAACGTTATTATTGTGCAGTGACCATTGGAGAGGATTCTGTAATCTCAGCTTACAGGCTCTCAGAAGATAGAGGGAGATCACTTGTTGGAGCGATTCTATCAAAAGTTGTGCCTGCAGCTGCTTCAACGATAGCTTCTTTCTCTAAACTGATCTGGAGAAGTAATGATCAATCACCAAAGCGAAAGCCAGAAGCCAAGACTCAGTCATTCGCTCGAGCATCGTCCTTGACATGTATAAAGGACTACCCAAGGAAAGGAGAGAAGCTCACGTTATCCCCGAGTGGAACATTAGCTGCCATAACAGATTCTCTTGGTCGAATACTTCTGCTAGACACTCAAGCTCTTGTAGTTGTCCGGCTATGGAAGGGTTATCGTGATGCAAGCTGTGTGTTCATGGAGATGTTAGCCAAAAAAGATAAAGGAAAATCTGTGATTCACACAGAACCGGTAAAAAGTGATTATTGTCTATGCTTAGCCATTCATGCTCCACGCAAAGGCATCATCGAGGTGTGGCAGATGAGAACGGGGCCACGTCTTCTAACGATTCAATGCGCAAAAGGTAGCAAATTGTTGCAGCCAGCGTACAGGTTTGGATCAAATTCTTCATCTTCTCCTTACATTCCTCTTGAAGTCTTCTTACTCAATGGAGATTCCGGCCAAGTCTCTATGCTCAACCGATCTCTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RAB3GAP2_N

Protein Analysis

455

Amino Acids

50.3

Weight (kDa)

9.05

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RAB3GAP2_N PF14655 28 - 417 9.9e-125 Rab3 GTPase-activating protein regulatory subunit N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14910
fragaria_vesca FvH4_3g18310 FvH4_3g18310 FvH4_3g18310
malus_domestica MD03G1243500.v1.1
prunus_persica Prupe.4G164800_v2.0.a1
pyrus_communis pycom03g19020
rosa_chinensis RchiOBHm_Chr5g0030941
rosa_laevigata RLG00000033273
rosa_multiflora Rmu_sc0001974.1_g000011
rosa_roxburghii Rroxscaffold_1G00049330
rosa_rugosa Rorug05G0121600 Rorug05G0121600
rosa_samantha Rh5AG214800 Rh5BG213800 Rh5CG237700 Rh5DG218400
rosa_wichuraiana Rw5G019650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1231
AccI GTMKAC 1 cut(s) 580
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 68, 284, 457
AclI AACGTT 1 cut(s) 682
AclWI GGATC 5 cut(s) 7, 20, 170, 328, 1279
AcoI YGGCCR 1 cut(s) 1333
AcsI RAATTY 2 cut(s) 511, 1276
AfaI GTAC 3 cut(s) 351, 572, 1262
AfiI CCNNNNNNNGG 3 cut(s) 22, 932, 1172
AflIII ACRYGT 1 cut(s) 908
AgeI ACCGGT 2 cut(s) 323, 1123
AgsI TTSAA 4 cut(s) 503, 804, 1226, 1307
AjiI CACGTC 1 cut(s) 1211
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 9 cut(s) 61, 567, 728, 797, 812, 943, 971, 1019, 1062
AluI AGCT 9 cut(s) 61, 567, 728, 797, 812, 943, 971, 1019, 1062
Alw21I GWGCWC 2 cut(s) 63, 115
Alw26I GTCTC 3 cut(s) 219, 404, 1345
Alw44I GTGCAC 1 cut(s) 111
AlwI GGATC 5 cut(s) 7, 20, 170, 328, 1279
Ama87I CYCGRG 2 cut(s) 891, 955
AoxI GGCC 2 cut(s) 1205, 1333
ApaLI GTGCAC 1 cut(s) 111
ApeKI GCWGC 5 cut(s) 33, 794, 797, 971, 1252
ApoI RAATTY 2 cut(s) 511, 1276
AsiGI ACCGGT 2 cut(s) 323, 1123
AspLEI GCGC 2 cut(s) 187, 1232
AspS9I GGNCC 2 cut(s) 526, 1205
AsuHPI GGTGA 3 cut(s) 185, 338, 843
AsuII TTCGAA 1 cut(s) 515
AvaI CYCGRG 2 cut(s) 891, 955
AvaII GGWCC 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 115
BamHI GGATCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 63
BarI GAAGNNNNNNTAC 2 cut(s) 1299, 1331
BauI CACGAG 2 cut(s) 86, 189
BbsI GAAGAC 2 cut(s) 1205, 1303
Bbv12I GWGCWC 2 cut(s) 63, 115
BbvI GCAGC 5 cut(s) 20, 784, 806, 958, 1264
BccI CCATC 2 cut(s) 75, 458
BceAI ACGGC 2 cut(s) 255, 345
BciT130I CCWGG 1 cut(s) 444
BclI TGATCA 1 cut(s) 844
BcoDI GTCTC 3 cut(s) 219, 404, 1345
BfaI CTAG 3 cut(s) 29, 137, 1007
BfmI CTRYAG 1 cut(s) 792
BisI GCNGC 5 cut(s) 34, 795, 798, 972, 1253
BlpI GCTNAGC 1 cut(s) 1150
BlsI GCNGC 5 cut(s) 35, 796, 799, 973, 1254
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 526
BmeT110I CYCGRG 2 cut(s) 891, 955
BmgBI CACGTC 1 cut(s) 1211
BmgT120I GGNCC 2 cut(s) 526, 1205
BmiI GGNNCC 3 cut(s) 14, 527, 1206
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 8 cut(s) 45, 172, 393, 538, 616, 905, 1045, 1185
BpiI GAAGAC 2 cut(s) 1205, 1303
BplI GAGNNNNNCTC 4 cut(s) 401, 433, 927, 959
BpmI CTGGAG 2 cut(s) 653, 853
Bpu1102I GCTNAGC 1 cut(s) 1150
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 999
Bsa29I ATCGAT 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 926
BsaWI WCCGGW 2 cut(s) 323, 1123
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 932, 1172
Bse118I RCCGGY 2 cut(s) 323, 1123
Bse1I ACTGG 4 cut(s) 565, 643, 666, 670
BseBI CCWGG 1 cut(s) 444
BseCI ATCGAT 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 926
BseGI GGATG 2 cut(s) 86, 413
BseLI CCNNNNNNNGG 3 cut(s) 22, 932, 1172
BseMII CTCAG 6 cut(s) 48, 219, 411, 738, 753, 893
BseNI ACTGG 4 cut(s) 565, 643, 666, 670
BseRI GAGGAG 2 cut(s) 437, 642
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 5 cut(s) 20, 784, 806, 958, 1264
BsgI GTGCAG 1 cut(s) 714
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 1207, 1335
BshTI ACCGGT 2 cut(s) 323, 1123
BshVI ATCGAT 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 63, 115
BsiHKCI CYCGRG 2 cut(s) 891, 955
BsiSI CCGG 4 cut(s) 324, 1033, 1124, 1332
BslFI GGGAC 2 cut(s) 301, 539
BslI CCNNNNNNNGG 3 cut(s) 22, 932, 1172
BsmAI GTCTC 3 cut(s) 219, 404, 1345
BsmFI GGGAC 2 cut(s) 301, 539
BsnI GGCC 2 cut(s) 1207, 1335
BsoBI CYCGRG 2 cut(s) 891, 955
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 63, 115
Bsp1407I TGTACA 1 cut(s) 349
Bsp1720I GCTNAGC 1 cut(s) 1150
BspACI CCGC 3 cut(s) 68, 284, 457
BspANI GGCC 2 cut(s) 1207, 1335
BspCNI CTCAG 6 cut(s) 49, 220, 412, 737, 752, 892
BspDI ATCGAT 1 cut(s) 145
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 3 cut(s) 14, 527, 1206
BspMAI CTGCAG 1 cut(s) 796
BspPI GGATC 5 cut(s) 7, 20, 170, 328, 1279
BspT104I TTCGAA 1 cut(s) 515
BsrFI RCCGGY 2 cut(s) 323, 1123
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 4 cut(s) 565, 643, 666, 670
BssAI RCCGGY 2 cut(s) 323, 1123
BssECI CCNNGG 1 cut(s) 926
BssSI CACGAG 2 cut(s) 86, 189
BssT1I CCWWGG 1 cut(s) 926
Bst2BI CACGAG 2 cut(s) 86, 189
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 585, 634
Bst6I CTCTTC 1 cut(s) 2
BstAUI TGTACA 1 cut(s) 349
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 4 cut(s) 457, 792, 1060, 1257
BstDEI CTNAG 8 cut(s) 57, 228, 390, 420, 724, 739, 879, 1150
BstF5I GGATG 2 cut(s) 86, 413
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 2 cut(s) 187, 1232
BstMAI GTCTC 3 cut(s) 219, 404, 1345
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 465, 1160
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 912
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 792
BstSLI GKGCMC 1 cut(s) 115
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 5 cut(s) 20, 784, 806, 958, 1264
BstV2I GAAGAC 2 cut(s) 1205, 1303
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 145
BsuRI GGCC 2 cut(s) 1207, 1335
BsuTUI ATCGAT 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 22
BtrI CACGTC 1 cut(s) 1211
BtsCI GGATG 2 cut(s) 86, 413
BtsI GCAGTG 1 cut(s) 702
BtsIMutI CAGTG 2 cut(s) 636, 702
Cac8I GCNNGC 4 cut(s) 457, 792, 1060, 1257
CfoI GCGC 2 cut(s) 187, 1232
Cfr10I RCCGGY 2 cut(s) 323, 1123
Cfr13I GGNCC 2 cut(s) 526, 1205
ClaI ATCGAT 1 cut(s) 145
Csp6I GTAC 3 cut(s) 350, 571, 1261
CspAI ACCGGT 2 cut(s) 323, 1123
CviAII CATG 3 cut(s) 909, 1072, 1160
CviQI GTAC 3 cut(s) 350, 571, 1261
DdeI CTNAG 8 cut(s) 57, 228, 390, 420, 724, 739, 879, 1150
EaeI YGGCCR 1 cut(s) 1333
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 926
Eco24I GRGCYC 1 cut(s) 63
Eco32I GATATC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 526
Eco53kI GAGCTC 1 cut(s) 61
Eco88I CYCGRG 2 cut(s) 891, 955
EcoICRI GAGCTC 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 442
EcoRV GATATC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 926
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 926
FaeI CATG 3 cut(s) 912, 1075, 1163
FaqI GGGAC 2 cut(s) 301, 539
FatI CATG 3 cut(s) 908, 1071, 1159
FauI CCCGC 3 cut(s) 61, 277, 464
FbaI TGATCA 1 cut(s) 844
FblI GTMKAC 1 cut(s) 580
Fnu4HI GCNGC 5 cut(s) 34, 795, 798, 972, 1253
FokI GGATG 2 cut(s) 93, 400
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 5 cut(s) 34, 795, 798, 972, 1253
FspBI CTAG 3 cut(s) 29, 137, 1007
FspI TGCGCA 1 cut(s) 1231
GlaI GCGC 2 cut(s) 186, 1231
GluI GCNGC 5 cut(s) 34, 795, 798, 972, 1253
GsuI CTGGAG 2 cut(s) 653, 853
HaeIII GGCC 2 cut(s) 1207, 1335
HapII CCGG 4 cut(s) 324, 1033, 1124, 1332
HhaI GCGC 2 cut(s) 187, 1232
Hin1II CATG 3 cut(s) 912, 1075, 1163
Hin6I GCGC 2 cut(s) 185, 1230
HinP1I GCGC 2 cut(s) 185, 1230
HincII GTYRAC 2 cut(s) 604, 680
HindII GTYRAC 2 cut(s) 604, 680
HpaII CCGG 4 cut(s) 324, 1033, 1124, 1332
HphI GGTGA 3 cut(s) 185, 338, 843
Hpy166II GTNNAC 6 cut(s) 91, 113, 313, 581, 604, 680
Hpy188I TCNGA 9 cut(s) 203, 219, 272, 333, 421, 480, 492, 591, 742
Hpy188III TCNNGA 7 cut(s) 88, 179, 196, 503, 832, 1052, 1304
Hpy8I GTNNAC 6 cut(s) 91, 113, 313, 581, 604, 680
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 71, 1036
HpyCH4III ACNGT 2 cut(s) 585, 634
HpyCH4IV ACGT 4 cut(s) 577, 682, 947, 1210
HpyCH4V TGCA 9 cut(s) 36, 113, 406, 432, 551, 695, 794, 1058, 1252
HpyF10VI GCNNNNNNNGC 2 cut(s) 465, 1160
HpyF3I CTNAG 8 cut(s) 57, 228, 390, 420, 724, 739, 879, 1150
HpySE526I ACGT 4 cut(s) 577, 682, 947, 1210
Hsp92II CATG 3 cut(s) 912, 1075, 1163
HspAI GCGC 2 cut(s) 185, 1230
Ksp22I TGATCA 1 cut(s) 844
LmnI GCTCC 2 cut(s) 767, 1168
Lsp1109I GCAGC 5 cut(s) 20, 784, 806, 958, 1264
LweI GCATC 8 cut(s) 45, 172, 393, 538, 616, 905, 1045, 1185
MaeI CTAG 3 cut(s) 29, 137, 1007
MaeII ACGT 4 cut(s) 577, 682, 947, 1210
MaeIII GTNAC 4 cut(s) 319, 634, 657, 697
MboII GAAGA 8 cut(s) 19, 520, 566, 755, 1205, 1272, 1278, 1303
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 2 cut(s) 63, 115
MluCI AATT 4 cut(s) 166, 511, 1244, 1276
MlyI GAGTC 3 cut(s) 239, 282, 871
MmeI TCCRAC 1 cut(s) 745
MseI TTAA 2 cut(s) 368, 1366
MslI CAYNNNNRTG 2 cut(s) 1076, 1184
MspA1I CMGCKG 1 cut(s) 797
MspI CCGG 4 cut(s) 324, 1033, 1124, 1332
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 465, 1160
NlaIII CATG 3 cut(s) 912, 1075, 1163
NlaIV GGNNCC 3 cut(s) 14, 527, 1206
NmuCI GTSAC 2 cut(s) 634, 697
NsbI TGCGCA 1 cut(s) 1231
NspI RCATGY 1 cut(s) 912
NspV TTCGAA 1 cut(s) 515
PaeR7I CTCGAG 1 cut(s) 891
PciI ACATGT 1 cut(s) 908
PcsI WCGNNNNNNNCGW 2 cut(s) 239, 953
PfeI GAWTC 7 cut(s) 119, 713, 772, 983, 1111, 1222, 1328
PflFI GACNNNGTC 1 cut(s) 880
PinAI ACCGGT 2 cut(s) 323, 1123
PkrI GCNGC 5 cut(s) 35, 796, 799, 973, 1254
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 3 cut(s) 238, 281, 871
PpsI GAGTC 3 cut(s) 238, 281, 871
PscI ACATGT 1 cut(s) 908
Psp124BI GAGCTC 1 cut(s) 63
Psp1406I AACGTT 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 14, 527, 1206
PspPI GGNCC 2 cut(s) 526, 1205
PspXI VCTCGAGB 1 cut(s) 891
PstI CTGCAG 1 cut(s) 796
PsuI RGATCY 1 cut(s) 12
PsyI GACNNNGTC 1 cut(s) 880
PvuI CGATCG 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 3 cut(s) 351, 572, 1262
RsaNI GTAC 3 cut(s) 350, 571, 1261
RseI CAYNNNNRTG 2 cut(s) 1076, 1184
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 368, 1366
SatI GCNGC 5 cut(s) 34, 795, 798, 972, 1253
Sau96I GGNCC 2 cut(s) 526, 1205
SchI GAGTC 3 cut(s) 239, 282, 871
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 2 cut(s) 63, 115
SfaNI GCATC 8 cut(s) 45, 172, 393, 538, 616, 905, 1045, 1185
SfcI CTRYAG 1 cut(s) 792
Sfr274I CTCGAG 1 cut(s) 891
SfuI TTCGAA 1 cut(s) 515
SinI GGWCC 1 cut(s) 526
SlaI CTCGAG 1 cut(s) 891
SmiMI CAYNNNNRTG 2 cut(s) 1076, 1184
SmlI CTYRAG 2 cut(s) 891, 1014
SmoI CTYRAG 2 cut(s) 891, 1014
Sse9I AATT 4 cut(s) 166, 511, 1244, 1276
SsiI CCGC 3 cut(s) 68, 284, 457
SspMI CTAG 3 cut(s) 29, 137, 1007
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 926
TaaI ACNGT 2 cut(s) 585, 634
TaiI ACGT 4 cut(s) 580, 685, 950, 1213
TaqI TCGA 8 cut(s) 145, 233, 246, 382, 515, 892, 994, 1182
TasI AATT 4 cut(s) 166, 511, 1244, 1276
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 7 cut(s) 119, 713, 772, 983, 1111, 1222, 1328
Tru1I TTAA 2 cut(s) 368, 1366
Tru9I TTAA 2 cut(s) 368, 1366
TscAI CASTG 2 cut(s) 643, 702
TseFI GTSAC 2 cut(s) 634, 697
TseI GCWGC 5 cut(s) 33, 794, 797, 971, 1252
Tsp45I GTSAC 2 cut(s) 634, 697
TspDTI ATGAA 3 cut(s) 1060, 1148, 1272
TspGWI ACGGA 2 cut(s) 38, 645
TspRI CASTG 2 cut(s) 643, 702
Tth111I GACNNNGTC 1 cut(s) 880
VneI GTGCAC 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 526
XapI RAATTY 2 cut(s) 511, 1276
XceI RCATGY 1 cut(s) 912
XhoI CTCGAG 1 cut(s) 891
XmiI GTMKAC 1 cut(s) 580
XspI CTAG 3 cut(s) 29, 137, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.