Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002853

Physical Location & Seq

Genomic Coordinates Forward (+)

10748478 .. 10753321

Gene Structure 4844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGTAGAACCATGAATCACCGTCCAATGGAACTTGGGAGGCCTGCCTCAGGTAAAAGAAAGTTAAAGGATTTATTGCTGCAAAAAGATAATCGCGCTTGTGCTGATTGCGGTGCTGCAGATCCTAAATGGGCGTCAGCAAATATCGGAGTTTTTATATGCTTAAAATGTTGTGGCGTGCACAGGAGTCTTGGTACACACATATCAAAGGTTTTGTCCGTGACACTGGATGAATGGTCCGATGATGAAATTGATGCTATGATGGAAGTTGGAGGGAATTCATCTGCTAACTCGATCTATGAGGCTTTTCTTCCAGAAGGATATTCAAAGCCTGGACCAGATGCTGGTCATGAGGAACGTTCAAAGTTCATCCGTTCAAAGTATGAGCTTCAAGAATTTCTGAAACCTAGCTTGCGGATTAACTCAGCAAATAAAAGTCAAGAAACTCCAAAGATCTCTGTCCAAACAAGTTTTTCTAGAAAGATTATGGATAGTTTTCGGTCAAATTCTTCAAAGCCAGCGGACGGTATGGTAGAGTTCATTGGATTATTGAAGGTAAAGGTGCTTAAAGGGACAAATTTAGCTATCAGAGATATGATGACAAGTGACCCTTATGTCATCCTTACTCTTGGGCGTCAGACTCTTCAGACAACTGTAGTAAAGAGTAACTTGAATCCAGTCTGGAATGAGGAGCTCATGTTGTCTGTTCCTCAGCGATATGGACCTTTACAGTTGCGAGTGTTTGATCACGACATGTTCTCAGCCGATGACATAATGGGAGAAGCAGAGATTGATCTTCAGCCCTTGATAACATCTGCAATGGCGTTTGGGGATGCAGGAATGTTCGGGGATATGCAAATCGGAAAATGGCTGAAGTCAAATGACAACGCCCTCCTAGACGATAGCACTGTCAACATTGTCGATGGGAAGGTAAAACAGGCGGTGTCCCTCAAGCTCCAGAATGTGGAATGTGGAGAACTAGATTTAGAACTAGAGTGGATGCCTCTTGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNGaseA

Protein Analysis

338

Amino Acids

37.54

Weight (kDa)

5.42

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	20 - 135	1.7e-38	Putative GTPase activating protein for Arf
C2	PF00168	182 - 270	3.1e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14920
fragaria_vesca	FvH4_3g18311 FvH4_3g18320 FvH4_3g18320
malus_domestica	MD03G1242900.v1.1 MD03G1243300.v1.1 MD03G1243400.v1.1
prunus_persica	Prupe.4G164900_v2.0.a1
pyrus_communis	pycom11g23210
rosa_chinensis	RchiOBHm_Chr5g0030951 RchiOBHm_Chr5g0030961 RchiOBHm_Chr5g0030971
rosa_laevigata	RLG00000033274 RLG00000033275 RLG00000033276
rosa_multiflora	Rmu_sc0001974.1_g000004 Rmu_sc0001974.1_g000008 Rmu_sc0001974.1_g000009 Rmu_sc0040817.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049310 Rroxscaffold_1G00049320
rosa_rugosa	Rorug05G0121600 Rorug05G0121700 Rorug05G0121900
rosa_samantha	Rh5AG214900 Rh5AG215000 Rh5AG215200 Rh5BG213900 Rh5BG214000 Rh5BG214200 Rh5CG237800 Rh5CG237900 Rh5CG238100 Rh5DG218500 Rh5DG218600 Rh5DG218800
rosa_wichuraiana	Rw5G019660 Rw5G019670 Rw5G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
AccB7I	CCANNNNNTGG	2 cut(s)	344, 964
AccII	CGCG	1 cut(s)	96
AciI	CCGC	4 cut(s)	111, 415, 521, 941
AclI	AACGTT	1 cut(s)	358
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	4 cut(s)	277, 395, 505, 577
AcuI	CTGAAG	3 cut(s)	629, 782, 893
AcyI	GRCGYC	2 cut(s)	134, 634
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	5 cut(s)	28, 50, 344, 524, 964
AflIII	ACRYGT	1 cut(s)	753
AgsI	TTSAA	7 cut(s)	327, 363, 378, 392, 513, 553, 673
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	5 cut(s)	388, 411, 584, 694, 955
AluI	AGCT	5 cut(s)	388, 411, 584, 694, 955
Alw21I	GWGCWC	2 cut(s)	183, 696
Alw44I	GTGCAC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	41
ApaLI	GTGCAC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	79, 116
ApoI	RAATTY	4 cut(s)	277, 395, 505, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	3 cut(s)	237, 335, 722
AsuHPI	GGTGA	1 cut(s)	11
AvaII	GGWCC	3 cut(s)	237, 335, 722
AxyI	CCTNAGG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	696
Bbv12I	GWGCWC	2 cut(s)	183, 696
BbvCI	CCTCAGC	1 cut(s)	711
BbvI	GCAGC	2 cut(s)	66, 103
BccI	CCATC	2 cut(s)	256, 917
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	745
BfaI	CTAG	5 cut(s)	408, 477, 896, 980, 992
BfmI	CTRYAG	2 cut(s)	117, 654
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	2 cut(s)	80, 117
BlsI	GCNGC	2 cut(s)	81, 118
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	3 cut(s)	237, 335, 722
BmgT120I	GGNCC	3 cut(s)	237, 335, 722
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	4 cut(s)	244, 331, 823, 990
BpmI	CTGGAG	1 cut(s)	941
Bpu10I	CCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	935
BsaHI	GRCGYC	2 cut(s)	134, 634
BsaXI	ACNNNNNCTCC	4 cut(s)	178, 208, 683, 713
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 50, 344, 524, 964
Bse1I	ACTGG	2 cut(s)	231, 677
Bse21I	CCTNAGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	825
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	5 cut(s)	235, 369, 618, 838, 1005
BseLI	CCNNNNNNNGG	5 cut(s)	28, 50, 344, 524, 964
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	4 cut(s)	63, 438, 725, 774
BseNI	ACTGG	2 cut(s)	231, 677
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	66, 103
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	183, 696
BslFI	GGGAC	2 cut(s)	586, 931
BslI	CCNNNNNNNGG	5 cut(s)	28, 50, 344, 524, 964
BsmFI	GGGAC	2 cut(s)	586, 931
BsnI	GGCC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	183, 696
Bsp143I	GATC	5 cut(s)	121, 294, 453, 745, 793
BspACI	CCGC	4 cut(s)	111, 415, 521, 941
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	4 cut(s)	62, 437, 724, 773
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	825
BsrI	ACTGG	2 cut(s)	231, 677
BssMI	GATC	5 cut(s)	121, 294, 453, 745, 793
BssNI	GRCGYC	2 cut(s)	134, 634
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	5 cut(s)	23, 527, 655, 732, 910
Bst6I	CTCTTC	1 cut(s)	648
BstACI	GRCGYC	2 cut(s)	134, 634
BstC8I	GCNNGC	4 cut(s)	45, 179, 413, 519
BstDEI	CTNAG	4 cut(s)	49, 424, 711, 760
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	5 cut(s)	235, 369, 618, 838, 1005
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	5 cut(s)	124, 297, 456, 748, 796
BstMBI	GATC	5 cut(s)	121, 294, 453, 745, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	1009
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	2 cut(s)	117, 654
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	66, 103
BstX2I	RGATCY	2 cut(s)	121, 453
BstYI	RGATCY	2 cut(s)	121, 453
Bsu36I	CCTNAGG	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	5 cut(s)	235, 369, 618, 838, 1005
BtsIMutI	CAGTG	2 cut(s)	224, 906
Cac8I	GCNNGC	4 cut(s)	45, 179, 413, 519
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	237, 335, 722
CseI	GACGC	2 cut(s)	123, 623
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	4 cut(s)	13, 350, 697, 754
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	4 cut(s)	49, 424, 711, 760
DpnI	GATC	5 cut(s)	123, 296, 455, 747, 795
DpnII	GATC	5 cut(s)	121, 294, 453, 745, 793
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	694
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	696
Eco47I	GGWCC	3 cut(s)	237, 335, 722
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	3 cut(s)	629, 782, 893
Eco81I	CCTNAGG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	694
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	696
FaeI	CATG	4 cut(s)	16, 353, 700, 757
FalI	AAGNNNNNCTT	4 cut(s)	595, 627, 653, 685
FaqI	GGGAC	2 cut(s)	586, 931
FatI	CATG	4 cut(s)	12, 349, 696, 753
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	80, 117
FokI	GGATG	5 cut(s)	242, 356, 605, 845, 1012
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	2 cut(s)	80, 117
FspBI	CTAG	5 cut(s)	408, 477, 896, 980, 992
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	2 cut(s)	80, 117
GsuI	CTGGAG	1 cut(s)	941
HaeIII	GGCC	1 cut(s)	43
HgaI	GACGC	2 cut(s)	123, 623
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	2 cut(s)	134, 634
Hin1II	CATG	4 cut(s)	16, 353, 700, 757
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HinfI	GANTC	4 cut(s)	16, 187, 640, 673
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	3 cut(s)	181, 197, 913
Hpy188I	TCNGA	7 cut(s)	149, 241, 402, 590, 639, 648, 863
Hpy188III	TCNNGA	9 cut(s)	314, 350, 392, 440, 477, 682, 749, 958, 1007
Hpy8I	GTNNAC	3 cut(s)	181, 197, 913
HpyAV	CCTTC	3 cut(s)	311, 547, 922
HpyCH4III	ACNGT	5 cut(s)	23, 527, 655, 732, 910
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	6 cut(s)	82, 119, 181, 818, 836, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1009
HpyF3I	CTNAG	4 cut(s)	49, 424, 711, 760
HpySE526I	ACGT	1 cut(s)	358
Hsp92I	GRCGYC	2 cut(s)	134, 634
Hsp92II	CATG	4 cut(s)	16, 353, 700, 757
HspAI	GCGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	5 cut(s)	121, 294, 453, 745, 793
LmnI	GCTCC	2 cut(s)	691, 960
Lsp1109I	GCAGC	2 cut(s)	66, 103
LweI	GCATC	4 cut(s)	244, 331, 823, 990
MaeI	CTAG	5 cut(s)	408, 477, 896, 980, 992
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	3 cut(s)	220, 605, 665
MalI	GATC	5 cut(s)	123, 296, 455, 747, 795
MboI	GATC	5 cut(s)	121, 294, 453, 745, 793
MboII	GAAGA	4 cut(s)	302, 501, 635, 788
MflI	RGATCY	2 cut(s)	121, 453
MhlI	GDGCHC	2 cut(s)	183, 696
MluCI	AATT	5 cut(s)	249, 277, 395, 505, 577
MlyI	GAGTC	2 cut(s)	196, 634
MmeI	TCCRAC	1 cut(s)	250
MseI	TTAA	4 cut(s)	65, 164, 420, 567
MspA1I	CMGCKG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	1009
NdeII	GATC	5 cut(s)	121, 294, 453, 745, 793
NlaIII	CATG	4 cut(s)	16, 353, 700, 757
NmuCI	GTSAC	2 cut(s)	220, 605
NspI	RCATGY	1 cut(s)	757
PagI	TCATGA	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	43
PciI	ACATGT	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	16, 673
PflMI	CCANNNNNTGG	2 cut(s)	344, 964
PkrI	GCNGC	2 cut(s)	81, 118
PleI	GAGTC	2 cut(s)	195, 634
PpsI	GAGTC	2 cut(s)	195, 634
PscI	ACATGT	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	696
Psp1406I	AACGTT	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspPI	GGNCC	3 cut(s)	237, 335, 722
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	121, 453
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	4 cut(s)	65, 164, 420, 567
SatI	GCNGC	2 cut(s)	80, 117
Sau3AI	GATC	5 cut(s)	121, 294, 453, 745, 793
Sau96I	GGNCC	3 cut(s)	237, 335, 722
SchI	GAGTC	2 cut(s)	196, 634
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	2 cut(s)	183, 696
SfaNI	GCATC	4 cut(s)	244, 331, 823, 990
SfcI	CTRYAG	2 cut(s)	117, 654
SinI	GGWCC	3 cut(s)	237, 335, 722
SmlI	CTYRAG	2 cut(s)	950, 1007
SmoI	CTYRAG	2 cut(s)	950, 1007
Sse9I	AATT	5 cut(s)	249, 277, 395, 505, 577
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	4 cut(s)	111, 415, 521, 941
SspMI	CTAG	5 cut(s)	408, 477, 896, 980, 992
SstI	GAGCTC	1 cut(s)	696
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	5 cut(s)	23, 527, 655, 732, 910
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	293, 921
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	5 cut(s)	249, 277, 395, 505, 577
TfiI	GAWTC	2 cut(s)	16, 673
Tru1I	TTAA	4 cut(s)	65, 164, 420, 567
Tru9I	TTAA	4 cut(s)	65, 164, 420, 567
TscAI	CASTG	2 cut(s)	231, 913
TseFI	GTSAC	2 cut(s)	220, 605
TseI	GCWGC	2 cut(s)	79, 116
Tsp45I	GTSAC	2 cut(s)	220, 605
TspDTI	ATGAA	6 cut(s)	29, 246, 261, 270, 358, 529
TspGWI	ACGGA	2 cut(s)	208, 362
TspRI	CASTG	2 cut(s)	231, 913
Van91I	CCANNNNNTGG	2 cut(s)	344, 964
VneI	GTGCAC	1 cut(s)	179
VpaK11BI	GGWCC	3 cut(s)	237, 335, 722
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	4 cut(s)	277, 395, 505, 577
XbaI	TCTAGA	1 cut(s)	476
XceI	RCATGY	1 cut(s)	757
XspI	CTAG	5 cut(s)	408, 477, 896, 980, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.